Wall clock time and date at job start Mon Mar 30 2020 02:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38266 * 119.94349 * 2 1 4 4 C 1.38150 * 120.05277 * 180.25957 * 3 2 1 5 5 C 1.38733 * 119.94350 * 359.46705 * 4 3 2 6 6 O 1.35899 * 120.05242 * 180.29943 * 5 4 3 7 7 C 1.42900 * 116.99575 * 175.79189 * 6 5 4 8 8 C 1.53004 * 109.46744 * 178.39639 * 7 6 5 9 9 C 1.52998 * 109.47112 * 298.39590 * 7 6 5 10 10 C 1.50700 * 109.47301 * 58.39787 * 7 6 5 11 11 H 1.08003 * 119.99707 * 0.02562 * 10 7 6 12 12 C 1.37877 * 120.00166 * 179.97438 * 10 7 6 13 13 N 1.31517 * 119.99746 * 359.97438 * 12 10 7 14 14 Si 1.86799 * 120.00066 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.46897 * 59.99832 * 14 12 10 16 16 H 1.48496 * 109.47216 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.46852 * 299.99883 * 14 12 10 18 18 C 1.38733 * 119.88744 * 0.27834 * 5 4 3 19 19 C 1.38140 * 119.94847 * 359.97438 * 18 5 4 20 20 H 1.08999 * 109.47081 * 270.25243 * 1 2 3 21 21 H 1.08999 * 109.47433 * 30.25665 * 1 2 3 22 22 H 1.09008 * 109.47305 * 150.25863 * 1 2 3 23 23 H 1.07997 * 119.97171 * 0.02669 * 3 2 1 24 24 H 1.08002 * 120.02480 * 179.74375 * 4 3 2 25 25 H 1.09004 * 109.46734 * 63.97528 * 8 7 6 26 26 H 1.09004 * 109.46856 * 183.97120 * 8 7 6 27 27 H 1.08992 * 109.47468 * 303.97400 * 8 7 6 28 28 H 1.08994 * 109.47530 * 53.15789 * 9 7 6 29 29 H 1.09004 * 109.47153 * 173.15686 * 9 7 6 30 30 H 1.09002 * 109.47439 * 293.15149 * 9 7 6 31 31 H 0.97000 * 119.99792 * 180.02562 * 13 12 10 32 32 H 1.07996 * 120.02520 * 180.02562 * 18 5 4 33 33 H 1.08002 * 119.97623 * 179.97438 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2007 -0.0054 5 6 4.2734 -0.0001 0.0003 6 8 5.6324 0.0000 0.0012 7 6 6.2811 -1.2694 0.1006 8 6 7.7974 -1.0729 0.0457 9 6 5.9005 -1.9342 1.4250 10 6 5.8465 -2.1468 -1.0450 11 1 5.1453 -1.7722 -1.7761 12 6 6.3447 -3.4272 -1.1603 13 7 7.1996 -3.8827 -0.2707 14 14 5.8065 -4.5145 -2.5807 15 1 6.1758 -3.8687 -3.8659 16 1 6.4814 -5.8332 -2.4780 17 1 4.3348 -4.7056 -2.5277 18 6 3.5785 -1.2008 0.0056 19 6 2.1971 -1.1982 0.0058 20 1 -0.3633 0.0045 1.0276 21 1 -0.3634 0.8876 -0.5178 22 1 -0.3634 -0.8924 -0.5098 23 1 1.6558 2.1326 0.0004 24 1 4.1172 2.1369 -0.0096 25 1 8.1208 -0.4974 0.9131 26 1 8.2902 -2.0452 0.0505 27 1 8.0616 -0.5362 -0.8654 28 1 4.8150 -1.9640 1.5179 29 1 6.2952 -2.9500 1.4483 30 1 6.3205 -1.3623 2.2525 31 1 7.5504 -4.7834 -0.3520 32 1 4.1172 -2.1368 0.0105 33 1 1.6557 -2.1327 0.0095 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041204651.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:18 Heat of formation + Delta-G solvation = -17.216597 kcal Electronic energy + Delta-G solvation = -15241.071904 eV Core-core repulsion = 12846.116476 eV Total energy + Delta-G solvation = -2394.955428 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.47703 -37.08853 -33.83505 -31.45550 -30.50457 -29.90830 -26.27141 -25.48421 -25.27813 -22.02971 -20.90278 -19.52642 -17.47265 -15.61319 -15.43035 -14.68009 -14.43323 -13.83427 -13.55064 -13.20637 -12.98465 -12.73369 -12.34327 -11.89474 -11.55112 -11.42420 -11.05397 -10.96438 -10.82806 -10.73055 -10.60967 -10.50483 -10.27150 -9.67519 -9.56297 -8.87041 -8.50567 -8.18378 -7.04290 -6.20661 -4.30241 2.11616 2.22102 3.21641 3.26248 3.30447 4.24422 4.54058 4.58425 5.04295 5.41180 5.46826 5.70309 5.84378 5.89960 6.08717 6.17042 6.33780 6.48119 6.57694 6.62493 6.77579 6.81418 6.90598 7.04899 7.14941 7.25540 7.34593 7.39480 7.52570 7.65071 7.76505 7.98306 8.05800 8.48485 8.91144 9.35137 10.79302 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.029345 B = 0.010422 C = 0.008514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.931580 B = 2686.002244 C = 3287.835347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.152 4.152 3 C -0.097 4.097 4 C -0.177 4.177 5 C 0.158 3.842 6 O -0.326 6.326 7 C 0.227 3.773 8 C -0.125 4.125 9 C -0.179 4.179 10 C -0.536 4.536 11 H 0.068 0.932 12 C 0.068 3.932 13 N -0.883 5.883 14 Si 0.898 3.102 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.189 4.189 19 C -0.098 4.098 20 H 0.057 0.943 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.113 0.887 24 H 0.117 0.883 25 H 0.020 0.980 26 H 0.103 0.897 27 H 0.036 0.964 28 H 0.047 0.953 29 H 0.099 0.901 30 H 0.020 0.980 31 H 0.266 0.734 32 H 0.176 0.824 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.111 4.076 1.250 8.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.153 4.153 3 C -0.115 4.115 4 C -0.196 4.196 5 C 0.111 3.889 6 O -0.241 6.241 7 C 0.191 3.809 8 C -0.182 4.182 9 C -0.237 4.237 10 C -0.574 4.574 11 H 0.086 0.914 12 C -0.134 4.134 13 N -0.520 5.520 14 Si 0.725 3.275 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.207 4.207 19 C -0.117 4.117 20 H 0.076 0.924 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.131 0.869 24 H 0.135 0.865 25 H 0.039 0.961 26 H 0.121 0.879 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.118 0.882 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.192 0.808 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.831 4.045 1.282 8.042 hybrid contribution -0.264 -0.787 -0.776 1.137 sum -7.095 3.258 0.506 7.824 Atomic orbital electron populations 1.20607 0.92298 1.01642 1.01145 1.19626 0.95232 0.93466 1.06939 1.20539 0.93067 0.96848 1.01031 1.20348 0.93652 0.96285 1.09275 1.18947 0.84052 0.93251 0.92651 1.85969 1.14992 1.36760 1.86337 1.19615 0.89873 0.77518 0.93850 1.21759 0.95411 1.03032 0.98034 1.22641 1.00438 1.04334 0.96263 1.21578 1.27211 0.98352 1.10249 0.91433 1.24844 0.94556 0.97735 0.96308 1.69762 1.29968 1.17720 1.34570 0.86535 0.79090 0.79354 0.82524 1.20020 1.21038 1.19893 1.22595 0.94425 1.00847 1.02803 1.20875 0.94121 0.96724 0.99939 0.92380 0.92538 0.92406 0.86908 0.86518 0.96112 0.87904 0.94511 0.93413 0.88229 0.96108 0.92344 0.80768 0.87067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 10.01 36.01 0.36 -0.94 16 2 C -0.15 -2.59 5.88 -104.60 -0.62 -3.21 16 3 C -0.10 -1.65 9.69 -39.60 -0.38 -2.03 16 4 C -0.18 -3.43 9.99 -39.43 -0.39 -3.83 16 5 C 0.16 3.55 6.01 -39.22 -0.24 3.31 16 6 O -0.33 -7.99 9.78 -19.42 -0.19 -8.18 16 7 C 0.23 5.66 0.84 -91.77 -0.08 5.58 16 8 C -0.12 -2.99 8.67 37.16 0.32 -2.67 16 9 C -0.18 -4.27 8.05 37.16 0.30 -3.97 16 10 C -0.54 -14.00 5.43 -34.44 -0.19 -14.18 16 11 H 0.07 1.83 6.83 -52.48 -0.36 1.47 16 12 C 0.07 1.75 5.12 -17.82 -0.09 1.66 16 13 N -0.88 -22.90 9.30 55.43 0.52 -22.38 16 14 Si 0.90 20.34 29.54 -169.99 -5.02 15.31 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 C -0.19 -4.14 6.29 -39.43 -0.25 -4.38 16 19 C -0.10 -1.86 9.69 -39.60 -0.38 -2.25 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 22 H 0.06 0.70 8.09 -51.92 -0.42 0.28 16 23 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 24 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.10 2.59 5.97 -51.93 -0.31 2.28 16 27 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.05 1.10 4.94 -51.93 -0.26 0.84 16 29 H 0.10 2.51 5.92 -51.93 -0.31 2.20 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 32 H 0.18 4.17 3.81 -52.49 -0.20 3.97 16 33 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 264.29 15.07 3.98 3.98 Total: -1.00 -26.52 264.29 -6.71 -33.24 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -4.37 Total: 4.95 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: -1.63 Total: -26.92 kcal Atomic # 7 Polarization: -22.90 SS G_CDS: 0.52 Total: -22.38 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.19 Total: -8.18 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -26.52 -6.71 -33.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041204651.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.020 kcal (2) G-P(sol) polarization free energy of solvation -26.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds