Wall clock time and date at job start Mon Mar 30 2020 03:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47521 * 2 1 4 4 O 1.42897 * 109.46940 * 119.99811 * 2 1 3 5 5 C 1.52999 * 109.47023 * 239.99890 * 2 1 3 6 6 C 1.50700 * 109.46924 * 175.00218 * 5 2 1 7 7 C 1.38254 * 120.00271 * 90.00036 * 6 5 2 8 8 C 1.38212 * 120.00319 * 179.97438 * 7 6 5 9 9 C 1.38260 * 119.99650 * 0.26336 * 8 7 6 10 10 C 1.38209 * 120.00092 * 359.45889 * 9 8 7 11 11 C 1.50700 * 120.00250 * 180.30571 * 10 9 8 12 12 C 1.50707 * 109.46929 * 270.23736 * 11 10 9 13 13 H 1.07997 * 119.99568 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00048 * 180.02562 * 12 11 10 15 15 N 1.31508 * 119.99736 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00049 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46996 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47359 * 119.99662 * 16 14 12 19 19 H 1.48504 * 109.46901 * 239.99765 * 16 14 12 20 20 C 1.38216 * 120.00003 * 269.97735 * 6 5 2 21 21 H 1.08998 * 109.47521 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47199 * 300.00352 * 1 2 3 23 23 H 1.09002 * 109.46904 * 59.99587 * 1 2 3 24 24 H 0.96706 * 113.99656 * 60.00063 * 4 2 1 25 25 H 1.08999 * 109.47332 * 55.00067 * 5 2 1 26 26 H 1.08999 * 109.47492 * 295.00004 * 5 2 1 27 27 H 1.07999 * 119.99740 * 359.97438 * 7 6 5 28 28 H 1.08002 * 119.99812 * 179.97438 * 8 7 6 29 29 H 1.08004 * 119.99616 * 179.72197 * 9 8 7 30 30 H 1.09004 * 109.47240 * 30.23169 * 11 10 9 31 31 H 1.08995 * 109.47480 * 150.23331 * 11 10 9 32 32 H 0.97003 * 120.00098 * 180.02562 * 15 14 12 33 33 H 1.08002 * 119.99716 * 359.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2492 6 6 3.5419 -0.6150 -1.3127 7 6 4.3292 -1.5817 -0.7153 8 6 5.7067 -1.4845 -0.7739 9 6 6.2972 -0.4175 -1.4253 10 6 5.5102 0.5459 -2.0274 11 6 6.1539 1.7053 -2.7434 12 6 6.3672 2.8388 -1.7734 13 1 6.0663 2.7305 -0.7418 14 6 6.9455 4.0143 -2.2031 15 7 7.3114 4.1462 -3.4594 16 14 7.2093 5.4195 -1.0010 17 1 6.7146 5.0218 0.3416 18 1 8.6575 5.7375 -0.9212 19 1 6.4646 6.6166 -1.4678 20 6 4.1323 0.4488 -1.9685 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.7209 -1.5952 1.2329 25 1 1.6054 -0.2618 -2.1370 26 1 1.7516 -1.7715 -1.2056 27 1 3.8679 -2.4129 -0.2028 28 1 6.3216 -2.2396 -0.3068 29 1 7.3736 -0.3392 -1.4672 30 1 7.1143 1.3917 -3.1525 31 1 5.5049 2.0376 -3.5536 32 1 7.7186 4.9731 -3.7617 33 1 3.5173 1.2036 -2.4358 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260396456.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:06 Heat of formation + Delta-G solvation = -54.049334 kcal Electronic energy + Delta-G solvation = -14396.356906 eV Core-core repulsion = 11999.804291 eV Total energy + Delta-G solvation = -2396.552615 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.01542 -37.28999 -33.58390 -32.49008 -31.08076 -30.20363 -27.10308 -26.13816 -23.25362 -22.01333 -21.07077 -19.67937 -16.42519 -16.21979 -15.80238 -15.58139 -14.61721 -14.43347 -14.20233 -13.95714 -13.00122 -12.51670 -12.41473 -12.19227 -11.97303 -11.66406 -11.58832 -11.20546 -11.00022 -10.78793 -10.68887 -10.45281 -10.28467 -9.92200 -9.48133 -9.37266 -8.41040 -8.04567 -7.70098 -6.02628 -4.06028 2.07396 2.22097 3.30635 3.38167 3.44363 4.35844 4.44926 4.57852 4.89689 5.03911 5.23111 5.31787 5.36014 5.45574 5.63074 5.68033 5.72200 5.90013 5.99510 6.05646 6.16973 6.25997 6.44882 6.70754 6.86244 7.17865 7.24478 7.28848 7.53687 7.72102 7.81822 7.89870 7.94018 8.35028 8.99909 9.57832 11.07380 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.027935 B = 0.007185 C = 0.006386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.096051 B = 3895.931705 C = 4383.411517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.102 0.898 4 O -0.555 6.555 5 C -0.107 4.107 6 C -0.086 4.086 7 C -0.134 4.134 8 C -0.124 4.124 9 C -0.128 4.128 10 C -0.033 4.033 11 C 0.047 3.953 12 C -0.509 4.509 13 H 0.058 0.942 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.122 4.122 21 H 0.055 0.945 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.367 0.633 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.028 0.972 31 H 0.027 0.973 32 H 0.261 0.739 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.669 -10.490 4.646 15.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.046 3.954 3 H 0.119 0.881 4 O -0.360 6.360 5 C -0.144 4.144 6 C -0.086 4.086 7 C -0.152 4.152 8 C -0.142 4.142 9 C -0.146 4.146 10 C -0.033 4.033 11 C 0.010 3.990 12 C -0.547 4.547 13 H 0.076 0.924 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.721 3.279 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.140 4.140 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.213 0.787 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.321 -9.775 4.634 14.952 hybrid contribution -0.044 0.348 0.432 0.557 sum -10.364 -9.427 5.066 14.898 Atomic orbital electron populations 1.22524 0.96764 1.02153 1.02730 1.21949 0.91955 0.97292 0.84239 0.88057 1.86671 1.77242 1.28299 1.43766 1.21264 0.93220 1.00916 0.99014 1.19555 0.94111 0.95833 0.99118 1.20619 0.93558 0.99303 1.01752 1.20992 0.94678 0.98361 1.00177 1.21069 0.99816 0.94550 0.99129 1.20642 0.93111 0.95161 0.94406 1.18359 0.95784 0.89715 0.95122 1.21118 1.39840 0.97921 0.95852 0.92408 1.25011 0.95538 0.98587 0.95238 1.69968 1.41891 1.26650 1.14947 0.86495 0.77864 0.82074 0.81422 1.19615 1.20915 1.20947 1.20915 0.94923 0.97309 1.00873 0.92578 0.91928 0.91533 0.78741 0.90401 0.91391 0.87641 0.87287 0.86672 0.95385 0.95433 0.92931 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 9.53 37.16 0.35 -1.40 16 2 C 0.10 1.31 3.57 -26.73 -0.10 1.22 16 3 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 4 O -0.56 -7.39 12.83 -35.23 -0.45 -7.84 16 5 C -0.11 -1.36 5.03 -27.88 -0.14 -1.50 16 6 C -0.09 -1.46 4.97 -104.62 -0.52 -1.98 16 7 C -0.13 -2.21 9.40 -39.58 -0.37 -2.58 16 8 C -0.12 -2.17 10.05 -39.58 -0.40 -2.57 16 9 C -0.13 -2.61 9.70 -39.58 -0.38 -3.00 16 10 C -0.03 -0.75 5.07 -104.63 -0.53 -1.28 16 11 C 0.05 1.24 5.10 -29.03 -0.15 1.09 16 12 C -0.51 -14.60 9.09 -34.44 -0.31 -14.91 16 13 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 16 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 C -0.12 -2.45 9.36 -39.58 -0.37 -2.82 16 21 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.37 3.31 9.05 45.56 0.41 3.73 16 25 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 26 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 27 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 30 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 31 H 0.03 0.75 8.09 -51.93 -0.42 0.33 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.11 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 285.55 15.07 4.30 4.30 Total: -1.00 -31.52 285.55 -7.64 -39.16 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -4.19 Total: 1.73 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: -3.01 Total: -28.18 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.74 Total: -26.06 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.45 Total: -7.84 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.52 -7.64 -39.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260396456.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.893 kcal (2) G-P(sol) polarization free energy of solvation -31.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds