Wall clock time and date at job start Mon Mar 30 2020 03:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99701 * 2 1 4 4 H 1.09001 * 109.46875 * 330.00110 * 3 2 1 5 5 C 1.52998 * 109.47133 * 90.00088 * 3 2 1 6 6 C 1.50707 * 109.46899 * 210.00304 * 3 2 1 7 7 C 1.38262 * 119.99652 * 334.99616 * 6 3 2 8 8 C 1.38207 * 119.99549 * 179.97438 * 7 6 3 9 9 C 1.38255 * 120.00357 * 359.97438 * 8 7 6 10 10 C 1.38220 * 119.99681 * 359.97438 * 9 8 7 11 11 C 1.38204 * 119.99812 * 155.02328 * 6 3 2 12 12 C 1.50701 * 120.00262 * 359.97438 * 11 6 3 13 13 C 1.50697 * 109.47152 * 85.00240 * 12 11 6 14 14 H 1.07995 * 120.00009 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99731 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00268 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99827 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47402 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47538 * 119.99846 * 17 15 13 20 20 H 1.48506 * 109.46978 * 239.99793 * 17 15 13 21 21 H 1.08999 * 109.47416 * 59.99713 * 1 2 3 22 22 H 1.09002 * 109.46865 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46999 * 299.99776 * 1 2 3 24 24 H 1.09001 * 109.47223 * 60.00235 * 5 3 2 25 25 H 1.09001 * 109.46678 * 179.97438 * 5 3 2 26 26 H 1.08997 * 109.47168 * 299.99959 * 5 3 2 27 27 H 1.07991 * 120.00050 * 0.02562 * 7 6 3 28 28 H 1.08000 * 120.00334 * 180.02562 * 8 7 6 29 29 H 1.08000 * 120.00604 * 179.72567 * 9 8 7 30 30 H 1.08002 * 119.99604 * 180.02562 * 10 9 8 31 31 H 1.09003 * 109.46798 * 205.00321 * 12 11 6 32 32 H 1.09000 * 109.46859 * 325.00017 * 12 11 6 33 33 H 0.97006 * 120.00437 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3386 1.2640 -0.7105 7 6 4.0492 0.0799 -0.7790 8 6 5.2672 0.0417 -1.4310 9 6 5.7748 1.1873 -2.0153 10 6 5.0639 2.3707 -1.9477 11 6 3.8467 2.4096 -1.2931 12 6 3.0722 3.7002 -1.2185 13 6 3.3819 4.3974 0.0811 14 1 4.0704 3.9505 0.7830 15 6 2.7855 5.6054 0.3745 16 7 1.9468 6.1494 -0.4800 17 14 3.1689 6.4694 1.9857 18 1 4.1352 5.6555 2.7661 19 1 3.7581 7.8031 1.7043 20 1 1.9176 6.6361 2.7679 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 2.8830 1.0776 1.9563 25 1 2.6613 2.7671 1.4424 26 1 1.2568 1.8015 1.9563 27 1 3.6521 -0.8152 -0.3237 28 1 5.8221 -0.8832 -1.4849 29 1 6.7286 1.1585 -2.5210 30 1 5.4602 3.2656 -2.4045 31 1 3.3556 4.3427 -2.0521 32 1 2.0046 3.4867 -1.2709 33 1 1.5274 6.9995 -0.2738 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260444988.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:11 Heat of formation + Delta-G solvation = -36.624778 kcal Electronic energy + Delta-G solvation = -15032.643824 eV Core-core repulsion = 12636.846795 eV Total energy + Delta-G solvation = -2395.797030 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.15644 -37.13842 -33.67876 -32.01136 -30.98987 -28.60955 -27.12211 -26.24453 -23.28216 -22.96289 -20.81014 -19.61122 -16.38511 -16.22182 -16.10165 -14.86060 -14.70597 -14.34870 -14.02639 -13.61064 -12.91989 -12.48198 -12.38821 -12.14625 -11.76585 -11.53045 -11.30093 -11.17734 -11.07143 -10.79755 -10.64078 -10.22569 -9.96448 -9.55087 -9.33728 -9.19586 -8.46198 -8.06054 -7.73639 -6.10249 -4.12573 2.06559 2.19781 3.24878 3.33628 3.37963 4.21087 4.35147 4.56923 5.23027 5.41084 5.56394 5.61287 5.63987 5.73743 5.81827 5.89948 5.94127 6.06166 6.24207 6.35351 6.47527 6.51513 6.72319 6.81594 7.07594 7.16782 7.17702 7.24445 7.47106 7.70970 7.77273 7.84227 7.88031 8.26275 8.91129 9.49447 10.99299 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.022961 B = 0.010821 C = 0.008447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.181824 B = 2586.985543 C = 3313.921612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.133 3.867 4 H 0.078 0.922 5 C -0.178 4.178 6 C -0.090 4.090 7 C -0.099 4.099 8 C -0.153 4.153 9 C -0.124 4.124 10 C -0.128 4.128 11 C -0.031 4.031 12 C 0.045 3.955 13 C -0.506 4.506 14 H 0.061 0.939 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.889 3.111 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 H 0.039 0.961 22 H 0.078 0.922 23 H 0.038 0.962 24 H 0.048 0.952 25 H 0.108 0.892 26 H 0.045 0.955 27 H 0.117 0.883 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.028 0.972 32 H 0.030 0.970 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.608 -9.311 -0.039 9.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.077 3.923 4 H 0.096 0.904 5 C -0.235 4.235 6 C -0.090 4.090 7 C -0.117 4.117 8 C -0.172 4.172 9 C -0.142 4.142 10 C -0.146 4.146 11 C -0.031 4.031 12 C 0.008 3.992 13 C -0.544 4.544 14 H 0.079 0.921 15 C -0.142 4.142 16 N -0.529 5.529 17 Si 0.716 3.284 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.209 1.209 21 H 0.058 0.942 22 H 0.096 0.904 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.127 0.873 26 H 0.064 0.936 27 H 0.136 0.864 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.135 0.865 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.605 -9.318 -0.060 9.338 hybrid contribution -0.017 0.773 0.876 1.168 sum 0.589 -8.545 0.816 8.604 Atomic orbital electron populations 1.22684 0.81904 1.01713 0.99979 1.87813 1.18923 1.29207 1.95259 1.20868 0.92207 0.83190 0.96064 0.90448 1.22485 1.01310 1.04902 0.94779 1.19543 0.96014 0.93578 0.99874 1.20848 0.94305 0.97593 0.98995 1.20879 0.96917 0.97867 1.01489 1.21026 0.99369 0.93387 1.00453 1.21012 0.95225 0.97381 1.00944 1.20432 0.94621 0.96074 0.92019 1.18407 0.94717 0.88001 0.98029 1.21011 1.26314 1.04477 1.02605 0.92083 1.24992 0.95071 0.97162 0.96926 1.69958 1.29184 1.18372 1.35430 0.86576 0.78317 0.79740 0.83750 1.19508 1.20903 1.20901 0.94243 0.90392 0.94288 0.93331 0.87321 0.93597 0.86450 0.87295 0.87231 0.86467 0.95346 0.95174 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.82 101.05 1.09 1.58 16 2 O -0.39 -7.03 9.19 -35.23 -0.32 -7.35 16 3 C 0.13 2.63 2.44 -27.88 -0.07 2.56 16 4 H 0.08 1.63 5.88 -51.93 -0.31 1.32 16 5 C -0.18 -3.48 9.49 37.16 0.35 -3.12 16 6 C -0.09 -1.85 5.07 -104.62 -0.53 -2.38 16 7 C -0.10 -1.84 9.35 -39.58 -0.37 -2.22 16 8 C -0.15 -2.60 10.05 -39.59 -0.40 -3.00 16 9 C -0.12 -2.15 10.05 -39.58 -0.40 -2.55 16 10 C -0.13 -2.54 9.68 -39.58 -0.38 -2.92 16 11 C -0.03 -0.69 5.07 -104.63 -0.53 -1.22 16 12 C 0.05 1.12 4.61 -29.04 -0.13 0.99 16 13 C -0.51 -13.40 6.80 -34.44 -0.23 -13.63 16 14 H 0.06 1.63 7.08 -52.49 -0.37 1.25 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 17 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H 0.04 0.55 8.08 -51.93 -0.42 0.13 16 22 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.04 0.53 7.87 -51.92 -0.41 0.12 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.11 2.41 4.75 -51.93 -0.25 2.16 16 26 H 0.04 0.81 7.87 -51.93 -0.41 0.40 16 27 H 0.12 2.04 7.35 -52.49 -0.39 1.66 16 28 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 30 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 31 H 0.03 0.75 8.05 -51.93 -0.42 0.33 16 32 H 0.03 0.79 6.23 -51.93 -0.32 0.46 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 274.15 15.07 4.13 4.13 Total: -1.00 -28.36 274.15 -6.71 -35.08 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.54 Total: 1.29 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: -1.70 Total: -24.37 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.74 Total: -24.60 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.32 Total: -7.35 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.36 -6.71 -35.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260444988.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.549 kcal (2) G-P(sol) polarization free energy of solvation -28.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds