Wall clock time and date at job start Mon Mar 30 2020 03:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99701 * 2 1 4 4 H 1.09001 * 109.46875 * 330.00110 * 3 2 1 5 5 C 1.52998 * 109.47133 * 90.00088 * 3 2 1 6 6 C 1.50707 * 109.46899 * 210.00304 * 3 2 1 7 7 C 1.38262 * 119.99652 * 334.99616 * 6 3 2 8 8 C 1.38207 * 119.99549 * 179.97438 * 7 6 3 9 9 C 1.38255 * 120.00357 * 359.97438 * 8 7 6 10 10 C 1.38220 * 119.99681 * 359.97438 * 9 8 7 11 11 C 1.38204 * 119.99812 * 155.02328 * 6 3 2 12 12 C 1.50701 * 120.00262 * 359.97438 * 11 6 3 13 13 C 1.50697 * 109.47152 * 85.00240 * 12 11 6 14 14 H 1.07995 * 120.00009 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99731 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00268 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99827 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47402 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47538 * 119.99846 * 17 15 13 20 20 H 1.48506 * 109.46978 * 239.99793 * 17 15 13 21 21 H 1.08999 * 109.47416 * 59.99713 * 1 2 3 22 22 H 1.09002 * 109.46865 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46999 * 299.99776 * 1 2 3 24 24 H 1.09001 * 109.47223 * 60.00235 * 5 3 2 25 25 H 1.09001 * 109.46678 * 179.97438 * 5 3 2 26 26 H 1.08997 * 109.47168 * 299.99959 * 5 3 2 27 27 H 1.07991 * 120.00050 * 0.02562 * 7 6 3 28 28 H 1.08000 * 120.00334 * 180.02562 * 8 7 6 29 29 H 1.08000 * 120.00604 * 179.72567 * 9 8 7 30 30 H 1.08002 * 119.99604 * 180.02562 * 10 9 8 31 31 H 1.09003 * 109.46798 * 205.00321 * 12 11 6 32 32 H 1.09000 * 109.46859 * 325.00017 * 12 11 6 33 33 H 0.97006 * 120.00437 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3386 1.2640 -0.7105 7 6 4.0492 0.0799 -0.7790 8 6 5.2672 0.0417 -1.4310 9 6 5.7748 1.1873 -2.0153 10 6 5.0639 2.3707 -1.9477 11 6 3.8467 2.4096 -1.2931 12 6 3.0722 3.7002 -1.2185 13 6 3.3819 4.3974 0.0811 14 1 4.0704 3.9505 0.7830 15 6 2.7855 5.6054 0.3745 16 7 1.9468 6.1494 -0.4800 17 14 3.1689 6.4694 1.9857 18 1 4.1352 5.6555 2.7661 19 1 3.7581 7.8031 1.7043 20 1 1.9176 6.6361 2.7679 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 2.8830 1.0776 1.9563 25 1 2.6613 2.7671 1.4424 26 1 1.2568 1.8015 1.9563 27 1 3.6521 -0.8152 -0.3237 28 1 5.8221 -0.8832 -1.4849 29 1 6.7286 1.1585 -2.5210 30 1 5.4602 3.2656 -2.4045 31 1 3.3556 4.3427 -2.0521 32 1 2.0046 3.4867 -1.2709 33 1 1.5274 6.9995 -0.2738 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260444988.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:09 Heat of formation + Delta-G solvation = -52.041897 kcal Electronic energy + Delta-G solvation = -15033.312361 eV Core-core repulsion = 12636.846795 eV Total energy + Delta-G solvation = -2396.465566 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.66136 -38.54182 -35.57023 -33.64979 -32.65126 -30.12665 -28.93903 -27.50254 -25.19558 -24.45416 -22.37420 -21.15174 -18.48138 -17.66308 -17.56052 -16.62383 -16.06015 -15.91270 -15.50794 -15.07993 -14.60770 -14.20694 -13.92411 -13.66297 -13.39793 -13.16361 -12.99533 -12.72327 -12.64484 -12.57818 -12.35332 -11.79081 -11.62835 -11.46164 -11.08984 -10.61240 -10.55639 -9.54393 -9.31274 -8.17997 -6.27220 0.59558 0.69278 1.38221 1.40846 1.52350 2.40071 2.84226 3.05137 3.13077 3.94610 4.17123 4.28040 4.32872 4.38954 4.42330 4.56427 4.60461 4.71349 4.80617 4.84814 4.96204 4.99082 5.19533 5.27508 5.40933 5.42235 5.51329 5.70250 5.72673 5.79404 6.06477 6.16451 6.32586 6.35408 6.82104 7.38177 8.91559 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.022961 B = 0.010821 C = 0.008447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.181824 B = 2586.985543 C = 3313.921612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.140 3.860 4 H 0.052 0.948 5 C -0.172 4.172 6 C -0.105 4.105 7 C -0.104 4.104 8 C -0.140 4.140 9 C -0.117 4.117 10 C -0.142 4.142 11 C -0.063 4.063 12 C 0.057 3.943 13 C -0.506 4.506 14 H 0.057 0.943 15 C 0.010 3.990 16 N -0.928 5.928 17 Si 0.952 3.048 18 H -0.264 1.264 19 H -0.280 1.280 20 H -0.277 1.277 21 H 0.037 0.963 22 H 0.110 0.890 23 H 0.043 0.957 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.132 0.868 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.115 0.885 31 H 0.000 1.000 32 H 0.008 0.992 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.800 -11.229 0.726 11.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.083 3.917 4 H 0.070 0.930 5 C -0.229 4.229 6 C -0.105 4.105 7 C -0.122 4.122 8 C -0.158 4.158 9 C -0.134 4.134 10 C -0.160 4.160 11 C -0.063 4.063 12 C 0.020 3.980 13 C -0.544 4.544 14 H 0.075 0.925 15 C -0.188 4.188 16 N -0.568 5.568 17 Si 0.777 3.223 18 H -0.188 1.188 19 H -0.206 1.206 20 H -0.203 1.203 21 H 0.055 0.945 22 H 0.128 0.872 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.150 0.850 28 H 0.168 0.832 29 H 0.165 0.835 30 H 0.133 0.867 31 H 0.018 0.982 32 H 0.026 0.974 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.798 -11.249 0.706 11.413 hybrid contribution -0.392 1.266 0.583 1.448 sum 1.406 -9.983 1.289 10.164 Atomic orbital electron populations 1.22947 0.80030 1.03896 1.00170 1.87778 1.20929 1.27733 1.95291 1.20632 0.91848 0.83621 0.95637 0.93012 1.22363 1.01988 1.03371 0.95167 1.19672 0.96647 0.93987 1.00243 1.21080 0.94895 0.97047 0.99142 1.21353 0.96048 0.99232 0.99144 1.21390 1.00240 0.92150 0.99651 1.21147 0.94938 0.98867 1.01083 1.20227 0.95867 0.95200 0.94991 1.18130 0.93915 0.89461 0.96472 1.21191 1.25680 1.04545 1.02952 0.92488 1.25777 0.94947 0.97961 1.00138 1.70075 1.30433 1.18915 1.37371 0.85587 0.78326 0.78529 0.79869 1.18772 1.20559 1.20301 0.94461 0.87169 0.93783 0.92283 0.90183 0.92313 0.85032 0.83212 0.83525 0.86667 0.98167 0.97428 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.82 113.37 1.23 1.92 16 2 O -0.40 -13.78 9.19 -148.98 -1.37 -15.15 16 3 C 0.14 5.57 2.44 29.85 0.07 5.64 16 4 H 0.05 2.30 5.88 -2.39 -0.01 2.28 16 5 C -0.17 -6.71 9.49 71.98 0.68 -6.03 16 6 C -0.11 -4.32 5.07 -19.86 -0.10 -4.42 16 7 C -0.10 -3.60 9.35 22.27 0.21 -3.39 16 8 C -0.14 -4.19 10.05 22.27 0.22 -3.97 16 9 C -0.12 -3.67 10.05 22.27 0.22 -3.44 16 10 C -0.14 -5.60 9.68 22.27 0.22 -5.38 16 11 C -0.06 -2.82 5.07 -19.87 -0.10 -2.92 16 12 C 0.06 3.00 4.61 29.10 0.13 3.13 16 13 C -0.51 -27.66 6.80 25.60 0.17 -27.49 16 14 H 0.06 3.11 7.08 -2.91 -0.02 3.09 16 15 C 0.01 0.56 5.46 84.66 0.46 1.02 16 16 N -0.93 -54.52 13.29 21.45 0.28 -54.23 16 17 Si 0.95 43.32 29.54 68.60 2.03 45.34 16 18 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 H 0.04 1.02 8.08 -2.39 -0.02 1.00 16 22 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 23 H 0.04 1.14 7.87 -2.38 -0.02 1.12 16 24 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.08 3.62 4.75 -2.39 -0.01 3.60 16 26 H 0.06 2.07 7.87 -2.39 -0.02 2.05 16 27 H 0.13 4.17 7.35 -2.92 -0.02 4.15 16 28 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 29 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 30 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 31 H 0.00 0.00 8.05 -2.39 -0.02 -0.02 16 32 H 0.01 0.43 6.23 -2.39 -0.01 0.41 16 33 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 Total: -1.00 -62.04 274.15 5.45 -56.60 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 1.08 Total: 12.77 kcal Atomic # 6 Polarization: -48.75 SS G_CDS: 3.42 Total: -45.33 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.28 Total: -54.23 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -1.37 Total: -15.15 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -62.04 5.45 -56.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260444988.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.554 kcal (2) G-P(sol) polarization free energy of solvation -62.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds