Wall clock time and date at job start Mon Mar 30 2020 02:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47131 * 2 1 4 4 H 1.09001 * 109.47422 * 305.00323 * 3 2 1 5 5 O 1.42906 * 109.46840 * 65.00090 * 3 2 1 6 6 C 1.50691 * 109.47390 * 184.99906 * 3 2 1 7 7 C 1.38254 * 120.00360 * 280.02472 * 6 3 2 8 8 C 1.38216 * 120.00528 * 179.97438 * 7 6 3 9 9 C 1.38261 * 119.99683 * 359.75182 * 8 7 6 10 10 C 1.38212 * 119.99716 * 0.50410 * 9 8 7 11 11 C 1.50700 * 119.99804 * 179.77075 * 10 9 8 12 12 C 1.50706 * 109.47062 * 269.72032 * 11 10 9 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00434 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 C 1.38215 * 120.00217 * 99.99886 * 6 3 2 21 21 H 1.08996 * 109.46757 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47079 * 299.99807 * 1 2 3 23 23 H 1.09003 * 109.46817 * 59.99733 * 1 2 3 24 24 H 1.09001 * 109.47079 * 240.00193 * 2 1 3 25 25 H 1.08992 * 109.47312 * 120.00142 * 2 1 3 26 26 H 0.96699 * 113.99980 * 59.99898 * 5 3 2 27 27 H 1.08002 * 119.99952 * 0.02562 * 7 6 3 28 28 H 1.07998 * 120.00339 * 180.02562 * 8 7 6 29 29 H 1.07997 * 120.00049 * 180.27351 * 9 8 7 30 30 H 1.09004 * 109.47406 * 149.72738 * 11 10 9 31 31 H 1.08993 * 109.47274 * 29.72364 * 11 10 9 32 32 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 33 33 H 1.08009 * 119.99624 * 0.02562 * 20 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6620 2.0813 1.2211 6 6 3.5419 1.4443 -0.1238 7 6 4.3275 1.2026 0.9879 8 6 5.7050 1.2038 0.8742 9 6 6.2972 1.4417 -0.3523 10 6 5.5119 1.6885 -1.4625 11 6 6.1575 1.9529 -2.7983 12 6 6.3950 3.4326 -2.9574 13 1 6.1076 4.1133 -2.1698 14 6 6.9801 3.9172 -4.1079 15 7 7.3359 3.0876 -5.0644 16 14 7.2752 5.7512 -4.3048 17 1 7.9179 6.0111 -5.6181 18 1 5.9781 6.4712 -4.2373 19 1 8.1640 6.2292 -3.2155 20 6 4.1341 1.6872 -1.3488 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 2.0142 1.6541 2.0139 27 1 3.8649 1.0120 1.9450 28 1 6.3187 1.0146 1.7425 29 1 7.3734 1.4382 -0.4420 30 1 5.5010 1.6027 -3.5949 31 1 7.1091 1.4242 -2.8530 32 1 7.1830 2.1352 -4.9621 33 1 3.5203 1.8760 -2.2173 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260749335.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:03 Heat of formation + Delta-G solvation = -76.978079 kcal Electronic energy + Delta-G solvation = -14401.796577 eV Core-core repulsion = 12004.249696 eV Total energy + Delta-G solvation = -2397.546880 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.71951 -38.33679 -35.78648 -33.83668 -32.89938 -31.95429 -28.60282 -26.91030 -25.29860 -23.17029 -22.89328 -21.33114 -19.05200 -18.00769 -16.98382 -16.80528 -16.20336 -15.67930 -15.60444 -15.37221 -14.75352 -14.20056 -14.03878 -13.71572 -13.40558 -13.15079 -13.02569 -12.81141 -12.58858 -12.44911 -11.98458 -11.87586 -11.76828 -11.66087 -11.07736 -10.89036 -10.62108 -9.69335 -9.46772 -8.71989 -6.46778 0.42691 0.54073 1.49411 1.57462 1.77871 2.51325 2.85783 3.08646 3.53625 3.59604 3.94466 4.01942 4.15539 4.18069 4.25065 4.48314 4.55749 4.61475 4.76609 4.86376 4.90550 4.95107 5.08707 5.15389 5.20336 5.24417 5.39558 5.54901 5.63170 5.85879 5.92012 6.09220 6.13386 6.49391 6.79708 7.33484 8.64686 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.034727 B = 0.006420 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.099853 B = 4360.607673 C = 4571.618687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.156 3.844 4 H 0.091 0.909 5 O -0.563 6.563 6 C -0.115 4.115 7 C -0.128 4.128 8 C -0.110 4.110 9 C -0.143 4.143 10 C -0.062 4.062 11 C 0.040 3.960 12 C -0.606 4.606 13 H 0.043 0.957 14 C -0.034 4.034 15 N -0.933 5.933 16 Si 1.118 2.882 17 H -0.278 1.278 18 H -0.270 1.270 19 H -0.269 1.269 20 C -0.133 4.133 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.048 0.952 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.387 0.613 27 H 0.157 0.843 28 H 0.152 0.848 29 H 0.110 0.890 30 H -0.003 1.003 31 H 0.000 1.000 32 H 0.256 0.744 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.183 -5.753 13.878 18.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C 0.096 3.904 4 H 0.109 0.891 5 O -0.371 6.371 6 C -0.115 4.115 7 C -0.146 4.146 8 C -0.127 4.127 9 C -0.161 4.161 10 C -0.063 4.063 11 C 0.003 3.997 12 C -0.644 4.644 13 H 0.061 0.939 14 C -0.231 4.231 15 N -0.570 5.570 16 Si 0.938 3.062 17 H -0.203 1.203 18 H -0.196 1.196 19 H -0.194 1.194 20 C -0.151 4.151 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.237 0.763 27 H 0.174 0.826 28 H 0.170 0.830 29 H 0.128 0.872 30 H 0.016 0.984 31 H 0.018 0.982 32 H 0.065 0.935 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.896 -4.239 12.453 16.461 hybrid contribution 0.106 -1.671 0.672 1.804 sum -9.790 -5.910 13.125 17.408 Atomic orbital electron populations 1.21705 0.94102 1.02227 1.02247 1.22154 0.97476 0.95023 1.03449 1.20735 0.87579 0.94251 0.87796 0.89070 1.86586 1.76511 1.58029 1.16002 1.20715 0.97532 0.99914 0.93372 1.21087 0.93345 1.01529 0.98646 1.21373 0.95582 0.98946 0.96824 1.21161 0.99614 1.02017 0.93343 1.20198 0.94319 0.95481 0.96253 1.18273 0.93985 0.96562 0.90830 1.22210 1.44350 0.92497 1.05313 0.93876 1.27463 0.92792 1.10908 0.91961 1.70920 1.46380 1.04547 1.35140 0.82934 0.77595 0.68871 0.76782 1.20332 1.19567 1.19391 1.20859 0.93913 1.02438 0.97906 0.91472 0.91850 0.93249 0.91722 0.89922 0.76312 0.82555 0.83046 0.87194 0.98436 0.98226 0.93493 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.81 71.98 0.71 -1.83 16 2 C -0.14 -2.87 5.59 30.60 0.17 -2.70 16 3 C 0.16 3.94 3.21 29.84 0.10 4.04 16 4 H 0.09 2.55 8.00 -2.39 -0.02 2.53 16 5 O -0.56 -13.12 12.73 -148.98 -1.90 -15.02 16 6 C -0.11 -3.60 4.97 -19.87 -0.10 -3.70 16 7 C -0.13 -3.44 9.32 22.27 0.21 -3.24 16 8 C -0.11 -3.29 10.05 22.27 0.22 -3.06 16 9 C -0.14 -5.67 9.70 22.27 0.22 -5.45 16 10 C -0.06 -2.86 5.07 -19.87 -0.10 -2.96 16 11 C 0.04 2.22 4.42 29.10 0.13 2.35 16 12 C -0.61 -36.09 9.09 25.60 0.23 -35.86 16 13 H 0.04 2.57 7.74 -2.91 -0.02 2.55 16 14 C -0.03 -2.00 5.46 84.65 0.46 -1.53 16 15 N -0.93 -58.76 13.65 21.45 0.29 -58.47 16 16 Si 1.12 51.48 29.90 68.60 2.05 53.53 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 20 C -0.13 -5.38 9.33 22.27 0.21 -5.17 16 21 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.06 1.07 7.82 -2.39 -0.02 1.05 16 23 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.39 5.80 7.51 -74.06 -0.56 5.24 16 27 H 0.16 2.70 6.79 -2.91 -0.02 2.68 16 28 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 29 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 30 H 0.00 -0.15 7.96 -2.39 -0.02 -0.17 16 31 H 0.00 -0.03 7.94 -2.39 -0.02 -0.05 16 32 H 0.26 16.29 7.22 -92.71 -0.67 15.62 16 33 H 0.10 4.32 8.04 -2.91 -0.02 4.30 16 Total: -1.00 -70.19 281.31 3.53 -66.66 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.63 Total: 12.41 kcal Atomic # 6 Polarization: -61.56 SS G_CDS: 2.45 Total: -59.11 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 0.29 Total: -58.47 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -1.90 Total: -15.02 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.05 Total: 53.53 kcal Total: -70.19 3.53 -66.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260749335.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.318 kcal (2) G-P(sol) polarization free energy of solvation -70.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds