Wall clock time and date at job start Mon Mar 30 2020 02:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46827 * 2 1 4 4 C 1.53004 * 109.47104 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46864 * 305.00150 * 4 3 2 6 6 O 1.42898 * 109.46663 * 64.99993 * 4 3 2 7 7 C 1.50697 * 109.46739 * 184.99915 * 4 3 2 8 8 C 1.37638 * 120.12785 * 265.01977 * 7 4 3 9 9 C 1.38616 * 120.25078 * 180.02562 * 8 7 4 10 10 C 1.38656 * 120.49914 * 359.97318 * 9 8 7 11 11 C 1.37596 * 120.24829 * 359.74675 * 10 9 8 12 12 C 1.40696 * 120.12738 * 85.00528 * 7 4 3 13 13 C 1.41396 * 120.24574 * 359.97438 * 12 7 4 14 14 H 1.08003 * 119.99657 * 334.37499 * 13 12 7 15 15 C 1.39942 * 119.99981 * 154.65469 * 13 12 7 16 16 N 1.30822 * 119.99988 * 343.10512 * 15 13 12 17 17 Si 1.86800 * 120.00031 * 163.10519 * 15 13 12 18 18 H 1.48499 * 109.47184 * 89.99412 * 17 15 13 19 19 H 1.48497 * 109.47364 * 209.99969 * 17 15 13 20 20 H 1.48506 * 109.46848 * 330.00148 * 17 15 13 21 21 H 1.09002 * 109.46906 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47217 * 300.00060 * 1 2 3 23 23 H 1.09003 * 109.47457 * 60.00249 * 1 2 3 24 24 H 1.08999 * 109.47610 * 240.00305 * 2 1 3 25 25 H 1.08996 * 109.47179 * 119.99481 * 2 1 3 26 26 H 1.09000 * 109.47272 * 59.99973 * 3 2 1 27 27 H 1.09003 * 109.46898 * 300.00093 * 3 2 1 28 28 H 0.96698 * 114.00675 * 60.00727 * 6 4 3 29 29 H 1.07998 * 119.87667 * 359.97438 * 8 7 4 30 30 H 1.08002 * 119.75044 * 179.97438 * 9 8 7 31 31 H 1.07998 * 119.87616 * 179.97438 * 10 9 8 32 32 H 1.08001 * 120.12851 * 180.28296 * 11 10 9 33 33 H 0.97006 * 120.00002 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9336 0.8531 0.8409 6 8 4.0457 0.8735 -1.2220 7 6 4.0722 2.8581 0.1232 8 6 4.3993 3.5762 -1.0045 9 6 4.8620 4.8781 -0.8936 10 6 5.0002 5.4721 0.3516 11 6 4.6737 4.7751 1.4922 12 6 4.2081 3.4507 1.3920 13 6 3.8743 2.7230 2.5574 14 1 3.1565 1.9178 2.5041 15 6 4.4696 3.0499 3.7810 16 7 5.5540 3.7814 3.8061 17 14 3.7160 2.4419 5.3784 18 1 4.2992 1.1223 5.7301 19 1 4.0028 3.4148 6.4629 20 1 2.2467 2.3050 5.2119 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6765 1.9564 -0.8900 28 1 3.7601 1.3480 -2.0147 29 1 4.2960 3.1233 -1.9795 30 1 5.1168 5.4340 -1.7838 31 1 5.3620 6.4869 0.4264 32 1 4.7778 5.2412 2.4608 33 1 5.9669 4.0077 4.6542 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260775235.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:48 Heat of formation + Delta-G solvation = -59.344934 kcal Electronic energy + Delta-G solvation = -14931.837411 eV Core-core repulsion = 12535.055161 eV Total energy + Delta-G solvation = -2396.782250 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.41721 -36.16962 -33.82623 -33.48379 -30.59723 -29.31291 -27.47932 -25.30536 -23.12543 -20.96729 -20.66990 -19.59004 -17.39470 -16.02164 -15.51617 -14.97504 -14.50325 -13.94348 -13.82367 -13.13811 -12.77346 -12.71475 -12.48382 -11.77900 -11.44957 -11.38873 -11.33474 -11.08732 -10.94116 -10.71489 -10.54692 -10.26242 -10.19225 -9.76281 -9.52576 -9.21087 -8.88080 -7.39501 -7.33382 -6.78123 -4.39769 2.76006 2.95814 3.05334 3.08942 3.21836 3.90622 4.60006 5.17486 5.31643 5.42546 5.50803 5.67919 5.90266 6.04079 6.12480 6.16818 6.23314 6.34929 6.40905 6.47934 6.53874 6.71963 6.81703 6.89174 7.08055 7.24594 7.37726 7.57985 7.86228 7.98840 8.06894 8.23367 8.38121 8.59298 8.86291 8.94424 10.16278 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.018580 B = 0.012676 C = 0.008260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.629380 B = 2208.379723 C = 3389.027844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.142 4.142 4 C 0.168 3.832 5 H 0.101 0.899 6 O -0.569 6.569 7 C -0.226 4.226 8 C -0.086 4.086 9 C -0.241 4.241 10 C -0.107 4.107 11 C -0.162 4.162 12 C 0.120 3.880 13 C -0.463 4.463 14 H 0.080 0.920 15 C 0.077 3.923 16 N -0.792 5.792 17 Si 0.904 3.096 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.260 1.260 21 H 0.047 0.953 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.361 0.639 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.649 -2.943 -2.989 7.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.180 4.180 4 C 0.110 3.890 5 H 0.119 0.881 6 O -0.374 6.374 7 C -0.228 4.228 8 C -0.104 4.104 9 C -0.260 4.260 10 C -0.126 4.126 11 C -0.182 4.182 12 C 0.118 3.882 13 C -0.493 4.493 14 H 0.098 0.902 15 C -0.141 4.141 16 N -0.417 5.417 17 Si 0.728 3.272 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.184 1.184 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.208 0.792 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.135 0.865 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.199 -3.276 -2.396 6.595 hybrid contribution -0.410 0.354 0.456 0.709 sum -5.609 -2.921 -1.939 6.615 Atomic orbital electron populations 1.21784 0.96711 1.00783 1.01514 1.21495 0.94805 0.97587 1.02002 1.22279 0.97118 0.96034 1.02536 1.20518 0.90875 0.91902 0.85754 0.88118 1.86529 1.77734 1.57083 1.16056 1.20207 1.12613 0.95986 0.93987 1.20199 0.99906 0.94260 0.96028 1.20327 1.13121 0.96618 0.95929 1.20692 1.00584 0.97917 0.93398 1.21323 1.05110 0.94647 0.97089 1.17352 0.88597 0.91170 0.91096 1.19569 1.22294 1.15590 0.91806 0.90151 1.25906 0.93433 0.93592 1.01137 1.69826 1.14167 1.29165 1.28550 0.86380 0.80837 0.79285 0.80698 1.19428 1.20112 1.18395 0.93391 0.92880 0.93190 0.91988 0.92240 0.90599 0.92702 0.79221 0.89552 0.89631 0.89551 0.86495 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.12 -1.85 5.83 -26.73 -0.16 -2.01 16 3 C -0.14 -2.52 4.73 -26.73 -0.13 -2.64 16 4 C 0.17 3.46 2.55 -27.88 -0.07 3.39 16 5 H 0.10 2.26 7.06 -51.93 -0.37 1.90 16 6 O -0.57 -10.95 12.53 -35.23 -0.44 -11.39 16 7 C -0.23 -5.34 5.12 -103.92 -0.53 -5.87 16 8 C -0.09 -1.91 9.29 -39.66 -0.37 -2.28 16 9 C -0.24 -5.44 10.05 -39.29 -0.39 -5.84 16 10 C -0.11 -2.55 10.02 -39.66 -0.40 -2.95 16 11 C -0.16 -4.22 8.69 -38.87 -0.34 -4.56 16 12 C 0.12 3.13 5.56 -106.82 -0.59 2.53 16 13 C -0.46 -11.83 8.09 -37.74 -0.31 -12.13 16 14 H 0.08 1.95 6.17 -52.48 -0.32 1.62 16 15 C 0.08 1.91 5.15 -17.34 -0.09 1.82 16 16 N -0.79 -20.32 10.98 55.55 0.61 -19.71 16 17 Si 0.90 18.39 29.59 -169.99 -5.03 13.36 16 18 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 19 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.93 7.82 -51.93 -0.41 0.52 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.08 1.45 7.40 -51.93 -0.38 1.07 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.36 5.76 7.33 45.56 0.33 6.10 16 29 H 0.09 1.65 6.40 -52.49 -0.34 1.32 16 30 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 31 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.12 3.12 6.21 -52.49 -0.33 2.80 16 33 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 LS Contribution 272.93 15.07 4.11 4.11 Total: -1.00 -27.22 272.93 -7.66 -34.88 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -3.90 Total: 10.88 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: -3.01 Total: -32.13 kcal Atomic # 7 Polarization: -20.32 SS G_CDS: 0.61 Total: -19.71 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.44 Total: -11.39 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.22 -7.66 -34.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260775235.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.467 kcal (2) G-P(sol) polarization free energy of solvation -27.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds