Wall clock time and date at job start Mon Mar 30 2020 03:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00163 * 2 1 4 4 H 1.48505 * 109.47104 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47084 * 299.99988 * 3 2 1 6 6 H 1.48493 * 109.47318 * 59.99787 * 3 2 1 7 7 C 1.37880 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99917 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99581 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47809 * 299.99904 * 9 7 2 11 11 N 1.46904 * 109.47242 * 60.00571 * 9 7 2 12 12 C 1.50705 * 109.47002 * 180.02562 * 9 7 2 13 13 C 1.34977 * 125.89024 * 275.23469 * 12 9 7 14 14 C 1.41039 * 107.46487 * 179.97438 * 13 12 9 15 15 C 1.34319 * 107.33286 * 359.97438 * 14 13 12 16 16 N 1.35999 * 125.89036 * 95.23037 * 12 9 7 17 17 C 1.46750 * 127.15078 * 0.35497 * 16 12 9 18 18 C 1.53092 * 108.84223 * 162.68214 * 17 16 12 19 19 C 1.53128 * 109.72207 * 50.64452 * 18 17 16 20 20 C 1.50971 * 127.44915 * 180.13047 * 15 14 13 21 21 H 0.96998 * 119.99631 * 0.02562 * 1 2 3 22 22 H 1.00897 * 111.00020 * 56.10780 * 11 9 7 23 23 H 1.00897 * 111.00111 * 180.02562 * 11 9 7 24 24 H 1.08004 * 126.27186 * 359.97438 * 13 12 9 25 25 H 1.07998 * 126.33569 * 179.97438 * 14 13 12 26 26 H 1.08993 * 109.58582 * 282.37409 * 17 16 12 27 27 H 1.09002 * 109.58586 * 42.79440 * 17 16 12 28 28 H 1.09000 * 109.30081 * 290.62886 * 18 17 16 29 29 H 1.08997 * 109.48808 * 170.78034 * 18 17 16 30 30 H 1.08992 * 109.51900 * 170.21784 * 19 18 17 31 31 H 1.09007 * 109.55402 * 50.08478 * 19 18 17 32 32 H 1.08996 * 109.72375 * 283.85531 * 20 15 14 33 33 H 1.08995 * 109.72733 * 44.52717 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 0.4060 -2.5767 -1.1997 12 6 2.2302 -3.6446 -0.0005 13 6 2.8202 -4.1813 -1.0895 14 6 3.6592 -5.2244 -0.6455 15 6 3.5502 -5.2839 0.6919 16 7 2.6719 -4.3159 1.0967 17 6 2.2911 -4.0784 2.4938 18 6 2.6734 -5.3052 3.3259 19 6 4.1332 -5.6794 3.0542 20 6 4.2550 -6.2349 1.6290 21 1 -0.4849 0.8401 -0.0004 22 1 0.9561 -2.4617 -2.0377 23 1 -0.1104 -3.4432 -1.2228 24 1 2.6762 -3.8691 -2.1133 25 1 4.2754 -5.8581 -1.2661 26 1 2.8190 -3.2034 2.8727 27 1 1.2153 -3.9141 2.5564 28 1 2.0281 -6.1404 3.0539 29 1 2.5477 -5.0799 4.3849 30 1 4.4540 -6.4372 3.7688 31 1 4.7616 -4.7944 3.1552 32 1 3.7872 -7.2180 1.5758 33 1 5.3065 -6.3117 1.3528 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261270062.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:03 Heat of formation + Delta-G solvation = 16.232910 kcal Electronic energy + Delta-G solvation = -15130.401147 eV Core-core repulsion = 12769.188950 eV Total energy + Delta-G solvation = -2361.212197 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.32682 -37.24521 -35.93990 -33.64083 -33.18793 -29.86399 -28.68958 -27.49676 -25.10763 -23.63017 -22.18402 -20.76109 -19.21602 -18.52216 -17.40620 -16.56317 -16.24510 -15.94220 -15.06422 -15.00868 -14.71308 -14.59289 -14.39864 -14.08503 -13.65401 -13.00448 -12.83665 -12.72279 -12.61219 -12.35351 -11.94180 -11.89112 -11.68504 -11.62383 -11.25131 -10.60761 -9.36433 -9.12723 -8.53218 -8.01049 -6.24918 1.38158 1.39895 1.49409 1.55595 2.20040 2.24471 2.46338 3.20322 3.70587 3.80410 3.90355 4.07217 4.38613 4.40116 4.43804 4.53954 4.67793 4.76417 4.82099 4.89665 4.91731 5.04212 5.08457 5.20003 5.32645 5.51522 5.65812 5.73809 6.05368 6.33883 6.48867 6.66495 6.73313 7.01833 7.21113 7.47604 9.00373 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.034143 B = 0.008727 C = 0.008119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.879539 B = 3207.774212 C = 3447.737941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.037 3.963 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.037 0.963 9 C 0.292 3.708 10 H 0.007 0.993 11 N -0.808 5.808 12 C 0.009 3.991 13 C -0.238 4.238 14 C -0.217 4.217 15 C -0.007 4.007 16 N -0.446 5.446 17 C 0.099 3.901 18 C -0.122 4.122 19 C -0.119 4.119 20 C -0.044 4.044 21 H 0.258 0.742 22 H 0.325 0.675 23 H 0.310 0.690 24 H 0.119 0.881 25 H 0.146 0.854 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.905 -11.805 6.293 15.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.167 4.167 3 Si 0.775 3.225 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.579 4.579 8 H 0.055 0.945 9 C 0.181 3.819 10 H 0.025 0.975 11 N -0.334 5.334 12 C -0.107 4.107 13 C -0.263 4.263 14 C -0.242 4.242 15 C -0.118 4.118 16 N -0.122 5.122 17 C -0.022 4.022 18 C -0.159 4.159 19 C -0.157 4.157 20 C -0.081 4.081 21 H 0.067 0.933 22 H 0.137 0.863 23 H 0.121 0.879 24 H 0.137 0.863 25 H 0.164 0.836 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.232 -10.959 6.958 14.400 hybrid contribution 0.666 0.496 -0.704 1.089 sum 6.898 -10.463 6.254 14.006 Atomic orbital electron populations 1.70226 1.06899 1.26513 1.47713 1.25666 0.95482 1.01710 0.93848 0.85668 0.78775 0.80200 0.77838 1.20014 1.20400 1.20193 1.21033 0.91641 0.91033 1.54204 0.94510 1.17293 0.86539 0.88041 0.90069 0.97504 1.59167 1.31079 1.38849 1.04334 1.22251 1.03353 0.98537 0.86524 1.20633 1.05570 1.02779 0.97304 1.20633 1.06374 1.03212 0.93964 1.20938 0.99347 0.96705 0.94831 1.44305 1.34772 1.26805 1.06364 1.21989 1.00793 1.00466 0.78970 1.21834 0.97964 0.95608 1.00506 1.21639 0.95490 1.01953 0.96611 1.20394 0.99966 0.95826 0.91944 0.93328 0.86318 0.87908 0.86308 0.83618 0.91449 0.91050 0.90817 0.87414 0.87648 0.92560 0.89111 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.07 12.77 21.45 0.27 -51.79 16 2 C 0.04 2.10 5.39 84.66 0.46 2.56 16 3 Si 0.95 44.85 29.54 68.60 2.03 46.87 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.54 -31.12 8.68 25.60 0.22 -30.90 16 8 H 0.04 2.19 7.74 -2.91 -0.02 2.17 16 9 C 0.29 15.40 2.91 43.42 0.13 15.53 16 10 H 0.01 0.41 7.38 -2.39 -0.02 0.40 16 11 N -0.81 -40.48 8.37 -174.95 -1.46 -41.95 16 12 C 0.01 0.40 5.87 41.16 0.24 0.64 16 13 C -0.24 -10.44 10.20 22.21 0.23 -10.21 16 14 C -0.22 -8.14 10.80 22.06 0.24 -7.90 16 15 C -0.01 -0.26 6.55 40.97 0.27 0.01 16 16 N -0.45 -17.77 3.15 -494.68 -1.56 -19.33 16 17 C 0.10 3.31 6.58 86.36 0.57 3.88 16 18 C -0.12 -2.72 5.91 30.67 0.18 -2.53 16 19 C -0.12 -2.39 5.96 30.79 0.18 -2.21 16 20 C -0.04 -1.01 6.28 30.08 0.19 -0.82 16 21 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 22 H 0.32 15.84 8.18 -89.70 -0.73 15.11 16 23 H 0.31 14.04 9.03 -89.70 -0.81 13.23 16 24 H 0.12 5.10 7.57 -2.91 -0.02 5.08 16 25 H 0.15 4.57 8.06 -2.91 -0.02 4.55 16 26 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.07 2.52 7.60 -2.39 -0.02 2.50 16 28 H 0.07 1.60 8.11 -2.39 -0.02 1.58 16 29 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.27 8.12 -2.38 -0.02 1.25 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -67.46 271.09 1.74 -65.72 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: -0.43 Total: 32.45 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 2.90 Total: -31.97 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -2.75 Total: -113.07 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -67.46 1.74 -65.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270062.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.950 kcal (2) G-P(sol) polarization free energy of solvation -67.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds