Wall clock time and date at job start Mon Mar 30 2020 03:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47062 * 2 1 4 4 C 1.35647 * 116.99781 * 179.97438 * 3 2 1 5 5 C 1.38447 * 120.26433 * 354.57388 * 4 3 2 6 6 C 1.38302 * 120.04865 * 179.97438 * 5 4 3 7 7 C 1.38824 * 120.59511 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.73344 * 179.97438 * 7 6 5 9 9 C 1.36492 * 120.53413 * 359.73596 * 7 6 5 10 10 C 1.50696 * 120.03435 * 180.26175 * 9 7 6 11 11 C 1.40725 * 119.92754 * 0.49698 * 9 7 6 12 12 C 1.41153 * 120.28631 * 179.78988 * 11 9 7 13 13 H 1.07998 * 120.00069 * 321.60429 * 12 11 9 14 14 C 1.39936 * 120.00200 * 141.60975 * 12 11 9 15 15 N 1.30865 * 119.99623 * 334.00015 * 14 12 11 16 16 Si 1.86802 * 120.00142 * 153.72081 * 14 12 11 17 17 H 1.48495 * 109.47066 * 180.27750 * 16 14 12 18 18 H 1.48502 * 109.46922 * 300.27582 * 16 14 12 19 19 H 1.48498 * 109.47068 * 60.27569 * 16 14 12 20 20 H 1.08996 * 109.47085 * 300.00024 * 1 2 3 21 21 H 1.09004 * 109.47169 * 59.99396 * 1 2 3 22 22 H 1.09000 * 109.47100 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46871 * 240.00162 * 2 1 3 24 24 H 1.08994 * 109.47071 * 120.00023 * 2 1 3 25 25 H 1.08003 * 119.97541 * 0.02562 * 5 4 3 26 26 H 1.07999 * 119.70407 * 179.97438 * 6 5 4 27 27 H 1.09001 * 109.47017 * 89.99870 * 8 7 6 28 28 H 1.09001 * 109.47205 * 209.99552 * 8 7 6 29 29 H 1.09002 * 109.47202 * 329.99711 * 8 7 6 30 30 H 1.09005 * 109.46936 * 270.23611 * 10 9 7 31 31 H 1.09000 * 109.47325 * 30.23249 * 10 9 7 32 32 H 1.09004 * 109.47048 * 150.23511 * 10 9 7 33 33 H 0.97002 * 120.00461 * 352.58296 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5250 0.0005 5 6 4.1988 0.4362 0.1141 6 6 5.5692 0.6225 0.1137 7 6 6.1091 1.8964 0.0004 8 6 7.6051 2.0771 0.0026 9 6 5.2958 2.9862 -0.1177 10 6 5.8940 4.3634 -0.2459 11 6 3.8981 2.8229 -0.1148 12 6 3.0499 3.9451 -0.2321 13 1 3.3060 4.8696 0.2638 14 6 1.8772 3.8596 -0.9908 15 7 1.7931 2.9955 -1.9700 16 14 0.4292 4.9735 -0.6010 17 1 -0.6850 4.6832 -1.5386 18 1 -0.0209 4.7304 0.7931 19 1 0.8426 6.3922 -0.7474 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 3.7895 -0.5594 0.2024 26 1 6.2252 -0.2307 0.2030 27 1 7.9790 2.0241 -1.0199 28 1 7.8532 3.0485 0.4303 29 1 8.0654 1.2893 0.5991 30 1 6.0288 4.7947 0.7461 31 1 6.8598 4.2949 -0.7465 32 1 5.2262 4.9968 -0.8298 33 1 2.5761 2.4906 -2.2401 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575696779.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:49 Heat of formation + Delta-G solvation = -40.301099 kcal Electronic energy + Delta-G solvation = -15284.670810 eV Core-core repulsion = 12888.714363 eV Total energy + Delta-G solvation = -2395.956447 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.87831 -36.70535 -33.83879 -31.70226 -30.76465 -30.03517 -26.73982 -24.79167 -24.53897 -22.57983 -20.53468 -19.17600 -17.47021 -16.32192 -15.20218 -14.98454 -14.11453 -13.76674 -13.35908 -13.19129 -12.72365 -12.47237 -12.09487 -11.98347 -11.88970 -11.76002 -11.21690 -11.11253 -10.95466 -10.63984 -10.46203 -10.28854 -10.23259 -9.93471 -9.47941 -9.18436 -8.61681 -7.43009 -6.96494 -6.70345 -4.19484 2.76834 2.86763 3.27627 3.36371 3.48265 4.22055 4.47487 4.75055 5.41194 5.59556 5.70962 5.87523 5.90039 5.99363 6.06298 6.18773 6.28363 6.32445 6.39976 6.41785 6.53210 6.60791 6.66927 6.68720 6.89725 7.16445 7.34452 7.61775 7.74823 7.98993 7.99825 8.14237 8.33057 8.63632 8.97763 9.18123 10.32306 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.024121 B = 0.013388 C = 0.009086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.518813 B = 2090.858844 C = 3080.897416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.060 3.940 3 O -0.286 6.286 4 C 0.033 3.967 5 C -0.182 4.182 6 C -0.210 4.210 7 C -0.087 4.087 8 C -0.102 4.102 9 C -0.169 4.169 10 C -0.083 4.083 11 C 0.085 3.915 12 C -0.528 4.528 13 H 0.073 0.927 14 C 0.053 3.947 15 N -0.781 5.781 16 Si 1.059 2.941 17 H -0.277 1.277 18 H -0.278 1.278 19 H -0.281 1.281 20 H 0.059 0.941 21 H 0.067 0.933 22 H 0.062 0.938 23 H 0.043 0.957 24 H 0.040 0.960 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.801 -2.256 2.029 3.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.016 4.016 3 O -0.200 6.200 4 C -0.012 4.012 5 C -0.201 4.201 6 C -0.229 4.229 7 C -0.088 4.088 8 C -0.158 4.158 9 C -0.170 4.170 10 C -0.140 4.140 11 C 0.082 3.918 12 C -0.555 4.555 13 H 0.091 0.909 14 C -0.169 4.169 15 N -0.403 5.403 16 Si 0.884 3.116 17 H -0.202 1.202 18 H -0.203 1.203 19 H -0.207 1.207 20 H 0.078 0.922 21 H 0.086 0.914 22 H 0.081 0.919 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.937 -1.816 1.564 2.573 hybrid contribution 1.723 -0.896 0.480 2.001 sum 0.786 -2.711 2.044 3.485 Atomic orbital electron populations 1.21684 0.94159 1.01125 1.03351 1.22393 0.94899 0.85059 0.99265 1.86177 1.19631 1.24891 1.89274 1.19316 0.81431 0.94364 1.06066 1.20686 0.94350 0.96244 1.08797 1.19952 0.93547 0.95163 1.14256 1.18948 0.93888 0.93267 1.02660 1.20667 0.93823 1.00873 1.00468 1.19160 0.92348 0.93946 1.11548 1.20406 0.98729 0.94990 0.99838 1.16914 0.91007 0.90142 0.93707 1.20121 1.06368 0.98545 1.30512 0.90889 1.26592 1.00477 0.97480 0.92349 1.70344 1.34371 1.15979 1.19619 0.83725 0.75419 0.75211 0.77208 1.20245 1.20323 1.20724 0.92235 0.91370 0.91918 0.93874 0.94209 0.88696 0.89246 0.92905 0.92531 0.93300 0.93997 0.93987 0.91851 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 10.28 37.16 0.38 -2.09 16 2 C 0.06 1.21 5.48 37.16 0.20 1.41 16 3 O -0.29 -7.19 7.21 -18.64 -0.13 -7.33 16 4 C 0.03 0.87 5.76 -38.34 -0.22 0.64 16 5 C -0.18 -4.31 9.05 -39.48 -0.36 -4.67 16 6 C -0.21 -4.78 9.68 -39.34 -0.38 -5.16 16 7 C -0.09 -1.98 5.84 -105.04 -0.61 -2.60 16 8 C -0.10 -1.83 9.14 36.00 0.33 -1.50 16 9 C -0.17 -4.14 5.90 -104.31 -0.62 -4.75 16 10 C -0.08 -1.77 8.60 36.00 0.31 -1.46 16 11 C 0.09 2.30 4.97 -106.68 -0.53 1.77 16 12 C -0.53 -14.31 7.56 -37.84 -0.29 -14.59 16 13 H 0.07 1.94 7.51 -52.49 -0.39 1.55 16 14 C 0.05 1.41 4.20 -17.33 -0.07 1.33 16 15 N -0.78 -21.33 12.03 55.55 0.67 -20.66 16 16 Si 1.06 22.94 30.01 -169.99 -5.10 17.84 16 17 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 19 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 20 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 21 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.04 0.85 7.90 -51.93 -0.41 0.44 16 24 H 0.04 0.74 7.43 -51.93 -0.39 0.36 16 25 H 0.09 2.02 6.32 -52.48 -0.33 1.69 16 26 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.95 6.66 -51.93 -0.35 0.61 16 29 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.78 6.67 -51.93 -0.35 0.44 16 32 H 0.06 1.40 6.99 -51.93 -0.36 1.04 16 33 H 0.29 8.22 7.35 -40.82 -0.30 7.92 16 LS Contribution 270.71 15.07 4.08 4.08 Total: -1.00 -28.67 270.71 -6.97 -35.64 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.63 Total: 2.08 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: -1.85 Total: -31.66 kcal Atomic # 7 Polarization: -21.33 SS G_CDS: 0.67 Total: -20.66 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.13 Total: -7.33 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.10 Total: 17.84 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.67 -6.97 -35.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575696779.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.660 kcal (2) G-P(sol) polarization free energy of solvation -28.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds