Wall clock time and date at job start Mon Mar 30 2020 03:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47062 * 2 1 4 4 C 1.35647 * 116.99781 * 179.97438 * 3 2 1 5 5 C 1.38447 * 120.26433 * 354.57388 * 4 3 2 6 6 C 1.38302 * 120.04865 * 179.97438 * 5 4 3 7 7 C 1.38824 * 120.59511 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.73344 * 179.97438 * 7 6 5 9 9 C 1.36492 * 120.53413 * 359.73596 * 7 6 5 10 10 C 1.50696 * 120.03435 * 180.26175 * 9 7 6 11 11 C 1.40725 * 119.92754 * 0.49698 * 9 7 6 12 12 C 1.41153 * 120.28631 * 179.78988 * 11 9 7 13 13 H 1.07998 * 120.00069 * 321.60429 * 12 11 9 14 14 C 1.39936 * 120.00200 * 141.60975 * 12 11 9 15 15 N 1.30865 * 119.99623 * 334.00015 * 14 12 11 16 16 Si 1.86802 * 120.00142 * 153.72081 * 14 12 11 17 17 H 1.48495 * 109.47066 * 180.27750 * 16 14 12 18 18 H 1.48502 * 109.46922 * 300.27582 * 16 14 12 19 19 H 1.48498 * 109.47068 * 60.27569 * 16 14 12 20 20 H 1.08996 * 109.47085 * 300.00024 * 1 2 3 21 21 H 1.09004 * 109.47169 * 59.99396 * 1 2 3 22 22 H 1.09000 * 109.47100 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46871 * 240.00162 * 2 1 3 24 24 H 1.08994 * 109.47071 * 120.00023 * 2 1 3 25 25 H 1.08003 * 119.97541 * 0.02562 * 5 4 3 26 26 H 1.07999 * 119.70407 * 179.97438 * 6 5 4 27 27 H 1.09001 * 109.47017 * 89.99870 * 8 7 6 28 28 H 1.09001 * 109.47205 * 209.99552 * 8 7 6 29 29 H 1.09002 * 109.47202 * 329.99711 * 8 7 6 30 30 H 1.09005 * 109.46936 * 270.23611 * 10 9 7 31 31 H 1.09000 * 109.47325 * 30.23249 * 10 9 7 32 32 H 1.09004 * 109.47048 * 150.23511 * 10 9 7 33 33 H 0.97002 * 120.00461 * 352.58296 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5250 0.0005 5 6 4.1988 0.4362 0.1141 6 6 5.5692 0.6225 0.1137 7 6 6.1091 1.8964 0.0004 8 6 7.6051 2.0771 0.0026 9 6 5.2958 2.9862 -0.1177 10 6 5.8940 4.3634 -0.2459 11 6 3.8981 2.8229 -0.1148 12 6 3.0499 3.9451 -0.2321 13 1 3.3060 4.8696 0.2638 14 6 1.8772 3.8596 -0.9908 15 7 1.7931 2.9955 -1.9700 16 14 0.4292 4.9735 -0.6010 17 1 -0.6850 4.6832 -1.5386 18 1 -0.0209 4.7304 0.7931 19 1 0.8426 6.3922 -0.7474 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 3.7895 -0.5594 0.2024 26 1 6.2252 -0.2307 0.2030 27 1 7.9790 2.0241 -1.0199 28 1 7.8532 3.0485 0.4303 29 1 8.0654 1.2893 0.5991 30 1 6.0288 4.7947 0.7461 31 1 6.8598 4.2949 -0.7465 32 1 5.2262 4.9968 -0.8298 33 1 2.5761 2.4906 -2.2401 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575696779.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:49 Heat of formation + Delta-G solvation = -55.390785 kcal Electronic energy + Delta-G solvation = -15285.325148 eV Core-core repulsion = 12888.714363 eV Total energy + Delta-G solvation = -2396.610785 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.69639 -38.47182 -35.72295 -33.39976 -32.51584 -31.65773 -28.49737 -26.47698 -26.44245 -24.14272 -22.39228 -20.94050 -19.36926 -18.11818 -16.98380 -16.66938 -15.92240 -15.48745 -15.10159 -14.84965 -14.41921 -14.15266 -13.76196 -13.53836 -13.45480 -13.32137 -12.86716 -12.79718 -12.55607 -12.33465 -12.10900 -11.99828 -11.95734 -11.65724 -11.18816 -11.02797 -10.52743 -9.35367 -8.93483 -8.55391 -6.20478 0.88691 1.01848 1.51682 1.63887 1.79145 2.43404 2.78510 2.89026 3.51198 4.08352 4.15390 4.29204 4.34230 4.39023 4.53207 4.64758 4.70447 4.81630 4.88690 4.90565 4.96327 4.99035 5.09892 5.16620 5.24158 5.38253 5.56994 5.67519 5.89398 5.97085 6.12427 6.23153 6.46837 6.75189 7.05204 7.30709 8.28975 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.024121 B = 0.013388 C = 0.009086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.518813 B = 2090.858844 C = 3080.897416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.051 3.949 3 O -0.312 6.312 4 C 0.013 3.987 5 C -0.193 4.193 6 C -0.205 4.205 7 C -0.100 4.100 8 C -0.097 4.097 9 C -0.183 4.183 10 C -0.077 4.077 11 C 0.046 3.954 12 C -0.560 4.560 13 H 0.063 0.937 14 C 0.021 3.979 15 N -0.802 5.802 16 Si 1.103 2.897 17 H -0.274 1.274 18 H -0.274 1.274 19 H -0.262 1.262 20 H 0.059 0.941 21 H 0.049 0.951 22 H 0.103 0.897 23 H 0.041 0.959 24 H 0.054 0.946 25 H 0.116 0.884 26 H 0.121 0.879 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.707 -2.986 2.667 4.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.025 4.025 3 O -0.226 6.226 4 C -0.032 4.032 5 C -0.212 4.212 6 C -0.224 4.224 7 C -0.100 4.100 8 C -0.154 4.154 9 C -0.185 4.185 10 C -0.134 4.134 11 C 0.043 3.957 12 C -0.589 4.589 13 H 0.082 0.918 14 C -0.196 4.196 15 N -0.424 5.424 16 Si 0.923 3.077 17 H -0.199 1.199 18 H -0.199 1.199 19 H -0.187 1.187 20 H 0.078 0.922 21 H 0.069 0.931 22 H 0.121 0.879 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.134 0.866 26 H 0.138 0.862 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.009 -2.552 2.205 3.373 hybrid contribution 1.604 -0.818 0.341 1.833 sum 1.595 -3.370 2.546 4.515 Atomic orbital electron populations 1.21693 0.91867 1.03491 1.02447 1.22715 0.96787 0.83269 0.99735 1.86135 1.19408 1.27746 1.89328 1.19586 0.82301 0.94844 1.06488 1.21018 0.94918 0.96722 1.08527 1.20471 0.93621 0.96462 1.11826 1.19492 0.96549 0.92607 1.01402 1.20694 0.90279 1.02435 1.01964 1.19696 0.92057 0.96124 1.10616 1.20385 0.99357 0.93144 1.00488 1.17394 0.92445 0.90916 0.94936 1.20187 1.07993 0.98610 1.32066 0.91845 1.27754 1.02547 0.97897 0.91390 1.70475 1.33224 1.17690 1.21026 0.83177 0.72813 0.74656 0.77062 1.19885 1.19924 1.18666 0.92199 0.93132 0.87873 0.94072 0.92778 0.86635 0.86153 0.91434 0.91395 0.91104 0.92849 0.91235 0.93666 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 10.28 71.98 0.74 -3.79 16 2 C 0.05 2.01 5.48 71.98 0.39 2.41 16 3 O -0.31 -15.98 7.21 -89.61 -0.65 -16.62 16 4 C 0.01 0.68 5.76 23.08 0.13 0.82 16 5 C -0.19 -8.99 9.05 22.33 0.20 -8.79 16 6 C -0.20 -8.86 9.68 22.43 0.22 -8.64 16 7 C -0.10 -4.34 5.84 -20.13 -0.12 -4.46 16 8 C -0.10 -3.14 9.14 71.23 0.65 -2.49 16 9 C -0.18 -8.95 5.90 -19.67 -0.12 -9.07 16 10 C -0.08 -3.23 8.60 71.23 0.61 -2.61 16 11 C 0.05 2.52 4.97 -21.20 -0.11 2.42 16 12 C -0.56 -31.42 7.56 23.40 0.18 -31.25 16 13 H 0.06 3.52 7.51 -2.91 -0.02 3.50 16 14 C 0.02 1.12 4.20 85.25 0.36 1.48 16 15 N -0.80 -45.32 12.03 21.83 0.26 -45.06 16 16 Si 1.10 47.05 30.01 68.60 2.06 49.11 16 17 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 18 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 19 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 20 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 21 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 23 H 0.04 1.62 7.90 -2.38 -0.02 1.60 16 24 H 0.05 1.96 7.43 -2.39 -0.02 1.94 16 25 H 0.12 4.75 6.32 -2.91 -0.02 4.74 16 26 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 2.04 6.66 -2.39 -0.02 2.02 16 29 H 0.07 1.98 8.08 -2.39 -0.02 1.96 16 30 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.07 2.46 6.67 -2.39 -0.02 2.44 16 32 H 0.04 2.02 6.99 -2.39 -0.02 2.01 16 33 H 0.27 16.00 7.35 -92.71 -0.68 15.32 16 Total: -1.00 -63.28 270.71 6.00 -57.29 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 1.17 Total: 19.25 kcal Atomic # 6 Polarization: -67.11 SS G_CDS: 3.15 Total: -63.96 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.26 Total: -45.06 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.65 Total: -16.62 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.06 Total: 49.11 kcal Total: -63.28 6.00 -57.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575696779.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.897 kcal (2) G-P(sol) polarization free energy of solvation -63.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds