Wall clock time and date at job start Mon Mar 30 2020 02:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38166 * 120.02665 * 2 1 4 4 C 1.38246 * 120.05277 * 180.02562 * 3 2 1 5 5 C 1.38281 * 120.11231 * 0.02562 * 4 3 2 6 6 C 1.38123 * 120.05733 * 359.68540 * 5 4 3 7 7 C 1.38708 * 120.02990 * 180.02562 * 2 1 3 8 8 O 1.35908 * 120.05076 * 359.97438 * 7 2 1 9 9 C 1.42902 * 116.99272 * 185.68327 * 8 7 2 10 10 H 1.08994 * 109.47242 * 35.19358 * 9 8 7 11 11 C 1.52996 * 109.47335 * 275.18498 * 9 8 7 12 12 C 1.53009 * 109.46562 * 155.19139 * 9 8 7 13 13 C 1.50702 * 109.46987 * 295.00203 * 12 9 8 14 14 H 1.07998 * 120.00260 * 359.97438 * 13 12 9 15 15 C 1.37878 * 119.99658 * 179.72624 * 13 12 9 16 16 N 1.31508 * 120.00438 * 0.27057 * 15 13 12 17 17 Si 1.86800 * 119.99770 * 180.27389 * 15 13 12 18 18 H 1.48500 * 109.47260 * 59.99753 * 17 15 13 19 19 H 1.48496 * 109.47083 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46983 * 300.00077 * 17 15 13 21 21 H 1.09002 * 109.47174 * 269.98352 * 1 2 3 22 22 H 1.09007 * 109.46917 * 29.97443 * 1 2 3 23 23 H 1.08999 * 109.47380 * 149.97494 * 1 2 3 24 24 H 1.07998 * 119.97657 * 0.04988 * 3 2 1 25 25 H 1.08006 * 119.94221 * 180.02562 * 4 3 2 26 26 H 1.08004 * 119.97155 * 179.97438 * 5 4 3 27 27 H 1.07998 * 120.03199 * 180.31486 * 6 5 4 28 28 H 1.09007 * 109.47182 * 180.02562 * 11 9 8 29 29 H 1.08994 * 109.47658 * 300.00606 * 11 9 8 30 30 H 1.09001 * 109.46800 * 60.00909 * 11 9 8 31 31 H 1.08995 * 109.47144 * 174.99689 * 12 9 8 32 32 H 1.08999 * 109.47144 * 54.99635 * 12 9 8 33 33 H 0.96993 * 120.00407 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 -0.0005 5 6 4.2751 0.0010 -0.0016 6 6 3.5886 -1.1975 0.0044 7 6 2.2012 -1.2009 -0.0005 8 8 1.5233 -2.3788 -0.0005 9 6 2.2980 -3.5730 0.1250 10 1 3.1464 -3.3882 0.7839 11 6 2.8063 -3.9986 -1.2539 12 6 1.4281 -4.6857 0.7136 13 6 1.0283 -4.3200 2.1198 14 1 1.3617 -3.3876 2.5508 15 6 0.2327 -5.1736 2.8543 16 7 -0.1729 -6.3092 2.3297 17 14 -0.2692 -4.7168 4.5947 18 1 -1.0341 -3.4442 4.5714 19 1 -1.1173 -5.7945 5.1642 20 1 0.9456 -4.5488 5.4322 21 1 -0.3634 -0.0003 1.0277 22 1 -0.3633 0.8903 -0.5135 23 1 -0.3634 -0.8897 -0.5142 24 1 1.6584 2.1316 0.0008 25 1 4.1195 2.1330 -0.0001 26 1 5.3552 0.0041 -0.0024 27 1 4.1313 -2.1313 0.0087 28 1 3.3969 -4.9098 -1.1582 29 1 1.9579 -4.1834 -1.9128 30 1 3.4260 -3.2059 -1.6732 31 1 1.9915 -5.6187 0.7269 32 1 0.5342 -4.8097 0.1024 33 1 -0.7322 -6.9099 2.8465 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695786709.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:48 Heat of formation + Delta-G solvation = -33.092055 kcal Electronic energy + Delta-G solvation = -14778.363079 eV Core-core repulsion = 12382.719239 eV Total energy + Delta-G solvation = -2395.643839 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.81192 -37.19729 -33.51416 -32.49476 -31.32621 -29.49471 -27.45416 -26.38759 -23.49353 -22.49038 -21.07615 -19.81500 -17.52511 -16.36286 -15.51892 -15.29518 -14.59720 -14.52108 -14.17266 -13.28133 -13.10722 -12.75341 -12.49313 -11.97416 -11.88474 -11.74991 -11.71131 -11.41148 -11.07125 -10.98776 -10.70980 -10.58314 -10.39315 -9.95594 -9.36858 -9.11756 -8.50664 -8.38256 -7.59484 -6.01379 -4.02680 1.62831 1.82729 3.34520 3.38235 3.42033 3.94892 4.12283 4.46365 5.11074 5.15186 5.33015 5.35678 5.54860 5.58303 5.70660 5.79179 5.86446 5.96684 6.02958 6.10352 6.17753 6.24952 6.53886 6.60083 6.64750 6.77472 6.80090 6.88586 7.15746 7.51202 7.60145 7.95199 8.19070 8.37485 9.00815 9.60577 11.10065 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.029152 B = 0.008205 C = 0.007316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.260203 B = 3411.561561 C = 3826.294470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.128 4.128 3 C -0.087 4.087 4 C -0.173 4.173 5 C -0.089 4.089 6 C -0.213 4.213 7 C 0.149 3.851 8 O -0.288 6.288 9 C 0.086 3.914 10 H 0.062 0.938 11 C -0.177 4.177 12 C 0.026 3.974 13 C -0.514 4.514 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.067 0.933 22 H 0.056 0.944 23 H 0.073 0.927 24 H 0.121 0.879 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.129 0.871 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.038 0.962 32 H 0.029 0.971 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.890 11.149 -5.572 13.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.129 4.129 3 C -0.105 4.105 4 C -0.191 4.191 5 C -0.107 4.107 6 C -0.232 4.232 7 C 0.102 3.898 8 O -0.200 6.200 9 C 0.030 3.970 10 H 0.080 0.920 11 C -0.235 4.235 12 C -0.010 4.010 13 C -0.552 4.552 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 H 0.086 0.914 22 H 0.075 0.925 23 H 0.091 0.909 24 H 0.139 0.861 25 H 0.133 0.867 26 H 0.135 0.865 27 H 0.147 0.853 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.563 10.920 -5.549 13.453 hybrid contribution 0.019 0.090 1.015 1.019 sum 5.581 11.011 -4.535 13.151 Atomic orbital electron populations 1.20571 0.90713 1.02253 1.02387 1.19304 0.96560 0.90569 1.06422 1.20782 0.94050 0.96524 0.99154 1.20867 0.94192 0.97627 1.06445 1.20849 0.99252 0.92083 0.98510 1.21361 0.93567 0.99298 1.08977 1.19062 0.90404 0.87067 0.93301 1.86264 1.36186 1.11889 1.85701 1.22862 0.95235 0.84050 0.94819 0.92039 1.22414 1.01423 1.01218 0.98429 1.19257 0.95027 0.90821 0.95942 1.21086 1.31171 1.04651 0.98290 0.92676 1.24968 0.96004 0.95002 0.98320 1.69933 1.36058 1.10290 1.37383 0.86651 0.78606 0.78094 0.84661 1.20153 1.21263 1.20273 0.91435 0.92473 0.90852 0.86125 0.86682 0.86538 0.85319 0.91440 0.91952 0.93303 0.94429 0.95312 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.61 9.79 36.01 0.35 -1.26 16 2 C -0.13 -2.17 5.89 -104.47 -0.62 -2.79 16 3 C -0.09 -1.25 9.70 -39.60 -0.38 -1.63 16 4 C -0.17 -2.35 10.04 -39.56 -0.40 -2.74 16 5 C -0.09 -1.27 10.04 -39.61 -0.40 -1.67 16 6 C -0.21 -3.58 8.24 -39.43 -0.32 -3.91 16 7 C 0.15 2.82 6.57 -39.22 -0.26 2.57 16 8 O -0.29 -6.22 8.60 -19.45 -0.17 -6.39 16 9 C 0.09 1.81 2.17 -26.73 -0.06 1.75 16 10 H 0.06 1.27 6.32 -51.93 -0.33 0.94 16 11 C -0.18 -3.06 9.17 37.16 0.34 -2.72 16 12 C 0.03 0.68 4.68 -27.88 -0.13 0.54 16 13 C -0.51 -14.63 8.88 -34.44 -0.31 -14.94 16 14 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 16 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 17 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 22 H 0.06 0.72 8.09 -51.92 -0.42 0.30 16 23 H 0.07 1.25 7.53 -51.93 -0.39 0.86 16 24 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 25 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 26 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 27 H 0.13 2.07 5.43 -52.49 -0.28 1.78 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.05 0.75 6.90 -51.93 -0.36 0.40 16 31 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 LS Contribution 278.57 15.07 4.20 4.20 Total: -1.00 -30.41 278.57 -7.24 -37.64 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -4.71 Total: -1.08 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: -2.28 Total: -25.23 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.74 Total: -26.12 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.17 Total: -6.39 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.41 -7.24 -37.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695786709.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.549 kcal (2) G-P(sol) polarization free energy of solvation -30.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds