Wall clock time and date at job start Mon Mar 30 2020 02:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38166 * 120.02665 * 2 1 4 4 C 1.38246 * 120.05277 * 180.02562 * 3 2 1 5 5 C 1.38281 * 120.11231 * 0.02562 * 4 3 2 6 6 C 1.38123 * 120.05733 * 359.68540 * 5 4 3 7 7 C 1.38708 * 120.02990 * 180.02562 * 2 1 3 8 8 O 1.35908 * 120.05076 * 359.97438 * 7 2 1 9 9 C 1.42902 * 116.99272 * 185.68327 * 8 7 2 10 10 H 1.08994 * 109.47242 * 35.19358 * 9 8 7 11 11 C 1.52996 * 109.47335 * 275.18498 * 9 8 7 12 12 C 1.53009 * 109.46562 * 155.19139 * 9 8 7 13 13 C 1.50702 * 109.46987 * 295.00203 * 12 9 8 14 14 H 1.07998 * 120.00260 * 359.97438 * 13 12 9 15 15 C 1.37878 * 119.99658 * 179.72624 * 13 12 9 16 16 N 1.31508 * 120.00438 * 0.27057 * 15 13 12 17 17 Si 1.86800 * 119.99770 * 180.27389 * 15 13 12 18 18 H 1.48500 * 109.47260 * 59.99753 * 17 15 13 19 19 H 1.48496 * 109.47083 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46983 * 300.00077 * 17 15 13 21 21 H 1.09002 * 109.47174 * 269.98352 * 1 2 3 22 22 H 1.09007 * 109.46917 * 29.97443 * 1 2 3 23 23 H 1.08999 * 109.47380 * 149.97494 * 1 2 3 24 24 H 1.07998 * 119.97657 * 0.04988 * 3 2 1 25 25 H 1.08006 * 119.94221 * 180.02562 * 4 3 2 26 26 H 1.08004 * 119.97155 * 179.97438 * 5 4 3 27 27 H 1.07998 * 120.03199 * 180.31486 * 6 5 4 28 28 H 1.09007 * 109.47182 * 180.02562 * 11 9 8 29 29 H 1.08994 * 109.47658 * 300.00606 * 11 9 8 30 30 H 1.09001 * 109.46800 * 60.00909 * 11 9 8 31 31 H 1.08995 * 109.47144 * 174.99689 * 12 9 8 32 32 H 1.08999 * 109.47144 * 54.99635 * 12 9 8 33 33 H 0.96993 * 120.00407 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 -0.0005 5 6 4.2751 0.0010 -0.0016 6 6 3.5886 -1.1975 0.0044 7 6 2.2012 -1.2009 -0.0005 8 8 1.5233 -2.3788 -0.0005 9 6 2.2980 -3.5730 0.1250 10 1 3.1464 -3.3882 0.7839 11 6 2.8063 -3.9986 -1.2539 12 6 1.4281 -4.6857 0.7136 13 6 1.0283 -4.3200 2.1198 14 1 1.3617 -3.3876 2.5508 15 6 0.2327 -5.1736 2.8543 16 7 -0.1729 -6.3092 2.3297 17 14 -0.2692 -4.7168 4.5947 18 1 -1.0341 -3.4442 4.5714 19 1 -1.1173 -5.7945 5.1642 20 1 0.9456 -4.5488 5.4322 21 1 -0.3634 -0.0003 1.0277 22 1 -0.3633 0.8903 -0.5135 23 1 -0.3634 -0.8897 -0.5142 24 1 1.6584 2.1316 0.0008 25 1 4.1195 2.1330 -0.0001 26 1 5.3552 0.0041 -0.0024 27 1 4.1313 -2.1313 0.0087 28 1 3.3969 -4.9098 -1.1582 29 1 1.9579 -4.1834 -1.9128 30 1 3.4260 -3.2059 -1.6732 31 1 1.9915 -5.6187 0.7269 32 1 0.5342 -4.8097 0.1024 33 1 -0.7322 -6.9099 2.8465 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695786709.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:47 Heat of formation + Delta-G solvation = -49.928315 kcal Electronic energy + Delta-G solvation = -14779.093154 eV Core-core repulsion = 12382.719239 eV Total energy + Delta-G solvation = -2396.373914 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.16369 -38.57466 -35.46397 -33.93822 -32.97549 -30.72955 -29.37618 -27.60581 -25.35460 -23.99382 -22.29700 -21.38710 -18.93567 -18.53427 -17.00828 -16.47477 -16.41296 -16.07494 -15.45856 -14.81087 -14.53893 -14.04447 -14.00354 -13.72663 -13.43970 -13.37423 -13.09384 -12.98691 -12.66586 -12.63080 -12.33806 -12.13731 -11.86522 -11.64978 -11.27158 -11.07177 -10.60314 -9.68206 -8.90677 -8.22805 -6.32005 0.45323 0.61306 1.36284 1.39205 1.47294 2.38489 2.50698 2.91475 3.11610 3.93193 3.99818 4.05964 4.21707 4.25939 4.40863 4.46981 4.52490 4.72457 4.80960 4.82857 4.84465 5.00469 5.03348 5.15656 5.32659 5.39413 5.45748 5.55481 5.63230 5.67323 5.74293 6.05502 6.17716 6.73506 6.80140 7.35392 8.88817 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.029152 B = 0.008205 C = 0.007316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.260203 B = 3411.561561 C = 3826.294470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.149 4.149 3 C -0.085 4.085 4 C -0.163 4.163 5 C -0.089 4.089 6 C -0.225 4.225 7 C 0.107 3.893 8 O -0.318 6.318 9 C 0.094 3.906 10 H 0.062 0.938 11 C -0.166 4.166 12 C 0.030 3.970 13 C -0.532 4.532 14 H 0.048 0.952 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.958 3.042 18 H -0.272 1.272 19 H -0.278 1.278 20 H -0.267 1.267 21 H 0.058 0.942 22 H 0.089 0.911 23 H 0.047 0.953 24 H 0.153 0.847 25 H 0.153 0.847 26 H 0.148 0.852 27 H 0.129 0.871 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.025 0.975 32 H -0.002 1.002 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.170 13.583 -5.207 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.150 4.150 3 C -0.103 4.103 4 C -0.181 4.181 5 C -0.107 4.107 6 C -0.244 4.244 7 C 0.062 3.938 8 O -0.232 6.232 9 C 0.039 3.961 10 H 0.080 0.920 11 C -0.224 4.224 12 C -0.007 4.007 13 C -0.570 4.570 14 H 0.067 0.933 15 C -0.193 4.193 16 N -0.571 5.571 17 Si 0.783 3.217 18 H -0.198 1.198 19 H -0.203 1.203 20 H -0.191 1.191 21 H 0.077 0.923 22 H 0.108 0.892 23 H 0.066 0.934 24 H 0.170 0.830 25 H 0.171 0.829 26 H 0.166 0.834 27 H 0.146 0.854 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.016 0.984 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.857 13.368 -5.192 15.896 hybrid contribution -0.339 -0.560 0.870 1.089 sum 6.518 12.808 -4.322 15.007 Atomic orbital electron populations 1.20549 0.90599 1.02602 1.01909 1.19639 0.97130 0.91056 1.07140 1.21185 0.94799 0.96581 0.97688 1.21366 0.94043 0.98869 1.03795 1.21259 1.00913 0.91376 0.97173 1.21507 0.92815 1.00612 1.09445 1.19456 0.91652 0.86515 0.96214 1.86173 1.37269 1.12815 1.86914 1.22544 0.93809 0.83147 0.96637 0.92014 1.22301 1.01533 1.02453 0.96067 1.19101 0.94429 0.92376 0.94817 1.21403 1.31470 1.04421 0.99684 0.93327 1.25848 0.95909 0.94870 1.02692 1.70048 1.36654 1.11265 1.39094 0.85601 0.78605 0.77977 0.79520 1.19762 1.20297 1.19139 0.92306 0.89216 0.93379 0.82953 0.82916 0.83448 0.85362 0.90079 0.92566 0.91174 0.95735 0.98378 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.13 9.79 71.24 0.70 -2.43 16 2 C -0.15 -4.93 5.89 -19.77 -0.12 -5.05 16 3 C -0.08 -2.16 9.70 22.25 0.22 -1.94 16 4 C -0.16 -3.72 10.04 22.28 0.22 -3.50 16 5 C -0.09 -2.27 10.04 22.25 0.22 -2.05 16 6 C -0.23 -7.31 8.24 22.36 0.18 -7.12 16 7 C 0.11 4.09 6.57 22.50 0.15 4.23 16 8 O -0.32 -14.26 8.60 -92.52 -0.80 -15.06 16 9 C 0.09 4.10 2.17 30.60 0.07 4.16 16 10 H 0.06 2.62 6.32 -2.39 -0.02 2.61 16 11 C -0.17 -5.78 9.17 71.98 0.66 -5.12 16 12 C 0.03 1.60 4.68 29.85 0.14 1.74 16 13 C -0.53 -31.28 8.88 25.60 0.23 -31.05 16 14 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 15 C 0.00 0.28 5.46 84.66 0.46 0.74 16 16 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 17 Si 0.96 45.57 29.54 68.60 2.03 47.60 16 18 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 21 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.09 2.12 8.09 -2.38 -0.02 2.10 16 23 H 0.05 1.71 7.53 -2.39 -0.02 1.69 16 24 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 25 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 26 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 27 H 0.13 4.03 5.43 -2.91 -0.02 4.02 16 28 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 29 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 2.12 6.90 -2.39 -0.02 2.10 16 31 H 0.02 1.35 8.14 -2.39 -0.02 1.34 16 32 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 33 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -67.44 278.57 5.72 -61.72 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.08 Total: 9.89 kcal Atomic # 6 Polarization: -50.51 SS G_CDS: 3.13 Total: -47.38 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.28 Total: -56.77 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.80 Total: -15.06 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -67.44 5.72 -61.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695786709.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.790 kcal (2) G-P(sol) polarization free energy of solvation -67.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds