Wall clock time and date at job start Mon Mar 30 2020 02:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.38159 * 120.03133 * 265.00010 * 4 3 2 6 6 C 1.38236 * 120.05848 * 179.97438 * 5 4 3 7 7 C 1.38294 * 120.11395 * 0.02562 * 6 5 4 8 8 C 1.38124 * 120.04986 * 0.02562 * 7 6 5 9 9 C 1.38717 * 120.02546 * 84.72533 * 4 3 2 10 10 O 1.35899 * 120.05527 * 359.97438 * 9 4 3 11 11 C 1.42902 * 116.99769 * 180.02562 * 10 9 4 12 12 C 1.50703 * 109.46846 * 180.02562 * 11 10 9 13 13 H 1.07992 * 120.00147 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99469 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00147 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99393 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47030 * 89.99922 * 16 14 12 18 18 H 1.48503 * 109.46710 * 209.99577 * 16 14 12 19 19 H 1.48500 * 109.47378 * 329.99684 * 16 14 12 20 20 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 21 21 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 23 23 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 24 24 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 25 25 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 26 26 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 27 27 H 1.08003 * 119.96941 * 359.97438 * 5 4 3 28 28 H 1.08004 * 119.94507 * 180.02562 * 6 5 4 29 29 H 1.07994 * 119.97278 * 180.02562 * 7 6 5 30 30 H 1.08002 * 120.02306 * 179.97438 * 8 7 6 31 31 H 1.09000 * 109.47142 * 300.00353 * 11 10 9 32 32 H 1.09006 * 109.47170 * 60.00300 * 11 10 9 33 33 H 0.97008 * 119.99506 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2380 1.5468 1.1925 6 6 5.6203 1.5462 1.1938 7 6 6.3152 1.4418 0.0027 8 6 5.6291 1.3382 -1.1916 9 6 4.2416 1.3317 -1.1950 10 8 3.5643 1.2228 -2.3681 11 6 4.3448 1.1120 -3.5600 12 6 3.4290 1.0020 -4.7517 13 1 2.3581 1.0157 -4.6129 14 6 3.9584 0.8837 -6.0193 15 7 5.2625 0.8664 -6.1883 16 14 2.8231 0.7480 -7.4966 17 1 2.5240 2.1062 -8.0174 18 1 3.4845 -0.0541 -8.5570 19 1 1.5586 0.0842 -7.0899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8932 -0.5139 0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 3.6976 1.6289 2.1240 28 1 6.1586 1.6275 2.1266 29 1 7.3952 1.4412 0.0064 30 1 6.1722 1.2571 -2.1216 31 1 4.9738 1.9959 -3.6659 32 1 4.9736 0.2235 -3.5012 33 1 5.6349 0.7836 -7.0802 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703847132.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:57 Heat of formation + Delta-G solvation = -58.603572 kcal Electronic energy + Delta-G solvation = -14528.061250 eV Core-core repulsion = 12131.311149 eV Total energy + Delta-G solvation = -2396.750102 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.02890 -38.27577 -35.95059 -35.06366 -32.01483 -31.01991 -29.50264 -27.15483 -25.42948 -23.04993 -22.67639 -21.67748 -19.01376 -18.43825 -17.08911 -16.67143 -16.46828 -16.26315 -15.48785 -15.24623 -14.65297 -14.50097 -14.29359 -13.62704 -13.41960 -13.07029 -12.93507 -12.87017 -12.73331 -12.32926 -12.08875 -12.03669 -11.93154 -11.66399 -11.45556 -11.27076 -10.74000 -9.72083 -8.92912 -8.41912 -6.56434 0.43203 0.60229 1.36561 1.39732 1.51792 2.25736 2.77885 2.87918 2.93036 3.86829 3.96237 4.16290 4.23814 4.31454 4.37905 4.51737 4.62907 4.70698 4.83173 4.84343 4.93575 4.94771 5.05492 5.11409 5.32182 5.34108 5.44998 5.47731 5.55380 5.62507 5.68625 5.83663 6.03999 6.49896 6.81604 7.16147 8.70625 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.025656 B = 0.008006 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.088511 B = 3496.671365 C = 4485.148452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C -0.065 4.065 4 C -0.137 4.137 5 C -0.078 4.078 6 C -0.160 4.160 7 C -0.089 4.089 8 C -0.235 4.235 9 C 0.104 3.896 10 O -0.330 6.330 11 C 0.215 3.785 12 C -0.556 4.556 13 H 0.066 0.934 14 C 0.011 3.989 15 N -0.927 5.927 16 Si 0.988 3.012 17 H -0.266 1.266 18 H -0.271 1.271 19 H -0.263 1.263 20 H 0.043 0.957 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.030 0.970 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.048 0.952 27 H 0.162 0.838 28 H 0.158 0.842 29 H 0.142 0.858 30 H 0.103 0.897 31 H -0.004 1.004 32 H -0.004 1.004 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.607 0.336 14.346 14.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.102 4.102 4 C -0.138 4.138 5 C -0.096 4.096 6 C -0.178 4.178 7 C -0.107 4.107 8 C -0.254 4.254 9 C 0.058 3.942 10 O -0.244 6.244 11 C 0.141 3.859 12 C -0.593 4.593 13 H 0.084 0.916 14 C -0.189 4.189 15 N -0.565 5.565 16 Si 0.809 3.191 17 H -0.191 1.191 18 H -0.196 1.196 19 H -0.187 1.187 20 H 0.062 0.938 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.049 0.951 24 H 0.091 0.909 25 H 0.115 0.885 26 H 0.067 0.933 27 H 0.179 0.821 28 H 0.176 0.824 29 H 0.160 0.840 30 H 0.121 0.879 31 H 0.013 0.987 32 H 0.013 0.987 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.674 0.314 14.163 14.636 hybrid contribution 0.367 -0.100 -1.439 1.488 sum -3.307 0.214 12.724 13.149 Atomic orbital electron populations 1.21732 0.94305 1.02102 1.02100 1.21430 0.96836 0.95831 1.01114 1.20409 0.89488 0.97748 1.02534 1.19622 0.97060 1.06665 0.90441 1.21234 0.94494 0.97169 0.96682 1.21372 0.94311 1.03685 0.98405 1.21207 1.00717 0.97372 0.91412 1.21448 0.93641 1.10122 1.00202 1.19604 0.91366 0.96130 0.87140 1.86036 1.37692 1.86840 1.13851 1.20094 0.91415 0.94247 0.80105 1.21305 0.94022 1.52995 0.90964 0.91572 1.25987 0.97274 0.93498 1.02105 1.70065 1.12559 1.49386 1.24512 0.85118 0.78204 0.78940 0.76793 1.19050 1.19626 1.18706 0.93818 0.92098 0.90758 0.95143 0.90867 0.88479 0.93349 0.82073 0.82400 0.84001 0.87889 0.98653 0.98663 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.91 71.98 0.71 -2.74 16 2 C -0.11 -3.34 5.92 30.59 0.18 -3.16 16 3 C -0.06 -1.98 5.06 29.85 0.15 -1.83 16 4 C -0.14 -4.78 5.15 -19.77 -0.10 -4.88 16 5 C -0.08 -2.09 9.68 22.25 0.22 -1.87 16 6 C -0.16 -4.11 10.04 22.28 0.22 -3.88 16 7 C -0.09 -2.80 10.04 22.26 0.22 -2.58 16 8 C -0.24 -9.76 9.04 22.36 0.20 -9.56 16 9 C 0.10 4.57 6.66 22.51 0.15 4.72 16 10 O -0.33 -17.32 9.26 -92.42 -0.86 -18.17 16 11 C 0.21 12.49 4.49 71.24 0.32 12.81 16 12 C -0.56 -33.50 9.43 25.60 0.24 -33.26 16 13 H 0.07 3.93 7.81 -2.91 -0.02 3.90 16 14 C 0.01 0.62 5.46 84.66 0.46 1.08 16 15 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 16 Si 0.99 44.30 29.54 68.60 2.03 46.33 16 17 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 20 H 0.04 1.13 8.14 -2.39 -0.02 1.12 16 21 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.10 2.25 8.05 -2.39 -0.02 2.24 16 26 H 0.05 1.74 7.70 -2.39 -0.02 1.73 16 27 H 0.16 2.96 8.06 -2.91 -0.02 2.93 16 28 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 30 H 0.10 4.73 6.30 -2.91 -0.02 4.72 16 31 H 0.00 -0.26 7.65 -2.39 -0.02 -0.28 16 32 H 0.00 -0.27 7.68 -2.38 -0.02 -0.29 16 33 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -67.87 282.67 5.50 -62.37 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 1.07 Total: 10.14 kcal Atomic # 6 Polarization: -48.13 SS G_CDS: 2.98 Total: -45.14 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.28 Total: -55.52 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.86 Total: -18.17 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -67.87 5.50 -62.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703847132.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.762 kcal (2) G-P(sol) polarization free energy of solvation -67.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds