Wall clock time and date at job start Mon Mar 30 2020 02:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38067 * 119.57028 * 2 1 4 4 C 1.38838 * 119.32758 * 180.02562 * 3 2 1 5 5 C 1.38345 * 118.50628 * 0.02562 * 4 3 2 6 6 C 1.39099 * 119.09556 * 359.97438 * 5 4 3 7 7 N 1.39003 * 119.70110 * 180.02562 * 6 5 4 8 8 C 1.46497 * 120.00485 * 5.00166 * 7 6 5 9 9 C 1.46504 * 120.00073 * 184.99684 * 7 6 5 10 10 H 1.09005 * 109.46413 * 0.02562 * 9 7 6 11 11 C 1.53001 * 109.47013 * 119.99832 * 9 7 6 12 12 C 1.50696 * 109.47502 * 240.00135 * 9 7 6 13 13 H 1.08003 * 120.00078 * 359.97438 * 12 9 7 14 14 C 1.37876 * 120.00198 * 179.97438 * 12 9 7 15 15 N 1.31524 * 119.99806 * 0.02562 * 14 12 9 16 16 Si 1.86793 * 120.00484 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.46882 * 59.99903 * 16 14 12 18 18 H 1.48500 * 109.47758 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46914 * 300.00406 * 16 14 12 20 20 N 1.31940 * 119.57444 * 179.97438 * 2 1 3 21 21 H 1.09003 * 109.47221 * 89.99593 * 1 2 3 22 22 H 1.09001 * 109.47450 * 209.99623 * 1 2 3 23 23 H 1.09003 * 109.47182 * 329.99949 * 1 2 3 24 24 H 1.08003 * 120.33920 * 0.02562 * 3 2 1 25 25 H 1.08001 * 120.74999 * 179.97438 * 4 3 2 26 26 H 1.07994 * 120.45234 * 179.72750 * 5 4 3 27 27 H 1.08997 * 109.47256 * 89.99563 * 8 7 6 28 28 H 1.09004 * 109.47363 * 210.00032 * 8 7 6 29 29 H 1.09001 * 109.46840 * 329.99778 * 8 7 6 30 30 H 1.08999 * 109.47195 * 180.02562 * 11 9 7 31 31 H 1.08998 * 109.47404 * 300.00349 * 11 9 7 32 32 H 1.08998 * 109.46936 * 60.00559 * 11 9 7 33 33 H 0.96998 * 119.99641 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1883 1.2008 0.0000 4 6 3.5767 1.1950 -0.0005 5 6 4.2318 -0.0236 -0.0016 6 6 3.4815 -1.1949 -0.0016 7 7 4.1268 -2.4261 -0.0021 8 6 5.5863 -2.4883 0.1079 9 6 3.3472 -3.6616 -0.1125 10 1 2.2874 -3.4171 -0.1847 11 6 3.7799 -4.4273 -1.3645 12 6 3.5845 -4.5159 1.1060 13 1 4.2497 -4.1731 1.8847 14 6 2.9522 -5.7352 1.2268 15 7 2.1425 -6.1529 0.2782 16 14 3.2457 -6.7940 2.7374 17 1 2.8257 -6.0502 3.9522 18 1 2.4556 -8.0464 2.6254 19 1 4.6895 -7.1272 2.8355 20 7 2.1581 -1.1475 0.0005 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5139 24 1 1.6468 2.1353 0.0004 25 1 4.1328 2.1208 -0.0010 26 1 5.3109 -0.0648 -0.0065 27 1 5.8693 -2.5455 1.1589 28 1 5.9528 -3.3713 -0.4157 29 1 6.0226 -1.5944 -0.3378 30 1 3.1997 -5.3464 -1.4469 31 1 3.6083 -3.8094 -2.2458 32 1 4.8397 -4.6717 -1.2927 33 1 1.6974 -7.0106 0.3634 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063096002.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:23 Heat of formation + Delta-G solvation = 42.553424 kcal Electronic energy + Delta-G solvation = -14928.097074 eV Core-core repulsion = 12568.026219 eV Total energy + Delta-G solvation = -2360.070854 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.64060 -36.39339 -33.16935 -32.12562 -30.97618 -29.23409 -26.59772 -25.78867 -25.12030 -22.39840 -20.99523 -19.62812 -16.62805 -16.38734 -15.60424 -15.07473 -14.57292 -14.20573 -13.61594 -13.41905 -13.19524 -12.53273 -12.45310 -11.94052 -11.78981 -11.52301 -11.42284 -11.04328 -11.01142 -10.78614 -10.57216 -10.25538 -10.07702 -9.51831 -9.07609 -8.70624 -8.59017 -8.31550 -6.63520 -6.00028 -4.08674 1.87453 2.11254 3.30491 3.35075 3.37620 3.92791 4.42547 4.53711 5.03824 5.23410 5.28857 5.61805 5.65207 5.77919 5.85703 5.96598 6.04561 6.13737 6.17647 6.36430 6.44734 6.61751 6.79477 6.83474 6.93976 7.11845 7.17189 7.58224 7.67684 7.93457 8.15516 8.30291 8.53414 8.89605 9.06359 9.56768 11.03213 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.031812 B = 0.008552 C = 0.007744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.960625 B = 3273.413895 C = 3614.693266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.178 3.822 3 C -0.266 4.266 4 C -0.034 4.034 5 C -0.270 4.270 6 C 0.421 3.579 7 N -0.585 5.585 8 C 0.102 3.898 9 C 0.265 3.735 10 H 0.071 0.929 11 C -0.148 4.148 12 C -0.522 4.522 13 H 0.056 0.944 14 C 0.064 3.936 15 N -0.890 5.890 16 Si 0.897 3.103 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.278 1.278 20 N -0.534 5.534 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.118 0.882 25 H 0.120 0.880 26 H 0.124 0.876 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.009 0.991 32 H 0.027 0.973 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.954 10.710 -1.426 10.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.037 3.963 3 C -0.289 4.289 4 C -0.059 4.059 5 C -0.296 4.296 6 C 0.183 3.817 7 N -0.292 5.292 8 C -0.042 4.042 9 C 0.165 3.835 10 H 0.089 0.911 11 C -0.207 4.207 12 C -0.561 4.561 13 H 0.074 0.926 14 C -0.138 4.138 15 N -0.528 5.528 16 Si 0.724 3.276 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.204 1.204 20 N -0.252 5.252 21 H 0.091 0.909 22 H 0.095 0.905 23 H 0.087 0.913 24 H 0.136 0.864 25 H 0.138 0.862 26 H 0.142 0.858 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.028 0.972 32 H 0.047 0.953 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.510 9.506 -1.475 9.737 hybrid contribution 0.765 0.134 0.865 1.163 sum 2.275 9.640 -0.610 9.923 Atomic orbital electron populations 1.20683 0.89802 1.02930 1.02549 1.20909 0.96152 0.87797 0.91473 1.21360 0.94679 0.98307 1.14595 1.21092 0.94205 0.96901 0.93722 1.21340 1.00332 0.92273 1.15630 1.18464 0.88233 0.86337 0.88635 1.47183 1.05387 1.03836 1.72829 1.21481 0.80702 1.01296 1.00747 1.18950 0.92748 0.78462 0.93380 0.91149 1.22134 0.99961 1.02377 0.96226 1.21340 1.27674 1.02654 1.04408 0.92615 1.24873 0.94951 0.97518 0.96433 1.69873 1.29283 1.20958 1.32703 0.86589 0.78131 0.79567 0.83276 1.20330 1.21190 1.20355 1.67145 1.07962 1.29045 1.21055 0.90864 0.90509 0.91316 0.86369 0.86177 0.85811 0.93733 0.90959 0.92975 0.88854 0.97152 0.95349 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 10.17 36.00 0.37 -1.12 16 2 C 0.18 3.25 6.78 -82.61 -0.56 2.69 16 3 C -0.27 -4.19 9.73 -39.42 -0.38 -4.57 16 4 C -0.03 -0.52 10.17 -39.32 -0.40 -0.92 16 5 C -0.27 -4.79 9.27 -39.22 -0.36 -5.16 16 6 C 0.42 9.09 7.37 -155.01 -1.14 7.94 16 7 N -0.59 -13.19 2.87 -175.41 -0.50 -13.69 16 8 C 0.10 1.88 9.52 59.85 0.57 2.45 16 9 C 0.27 6.89 2.66 -69.08 -0.18 6.71 16 10 H 0.07 2.06 6.82 -51.93 -0.35 1.70 16 11 C -0.15 -3.65 8.95 37.16 0.33 -3.32 16 12 C -0.52 -14.48 8.37 -34.44 -0.29 -14.77 16 13 H 0.06 1.55 7.65 -52.48 -0.40 1.15 16 14 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 15 N -0.89 -25.42 11.32 55.43 0.63 -24.79 16 16 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 N -0.53 -11.89 8.76 -8.67 -0.08 -11.97 16 21 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 23 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 24 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 25 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 26 H 0.12 1.92 6.02 -52.49 -0.32 1.60 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.33 6.43 -51.93 -0.33 0.99 16 29 H 0.05 0.80 5.97 -51.93 -0.31 0.49 16 30 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.03 0.65 6.66 -51.93 -0.35 0.30 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 272.79 15.07 4.11 4.11 Total: -1.00 -30.38 272.79 -7.48 -37.85 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -4.47 Total: 0.40 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -2.15 Total: -8.39 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 0.05 Total: -50.45 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.38 -7.48 -37.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096002.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.405 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds