Wall clock time and date at job start Mon Mar 30 2020 02:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38307 * 119.92688 * 2 1 4 4 C 1.38078 * 120.07218 * 180.27824 * 3 2 1 5 5 C 1.50703 * 120.03722 * 179.72609 * 4 3 2 6 6 C 1.38929 * 119.92697 * 359.45370 * 4 3 2 7 7 N 1.39675 * 120.07662 * 180.25413 * 6 4 3 8 8 C 1.38891 * 119.85058 * 0.27061 * 6 4 3 9 9 C 1.50701 * 120.04089 * 180.02562 * 8 6 4 10 10 H 1.09003 * 109.47095 * 325.01000 * 9 8 6 11 11 N 1.46891 * 109.47472 * 205.00178 * 9 8 6 12 12 C 1.50703 * 109.46559 * 85.00432 * 9 8 6 13 13 H 1.08001 * 120.00336 * 0.02562 * 12 9 8 14 14 C 1.37887 * 119.99691 * 180.02562 * 12 9 8 15 15 N 1.31515 * 120.00026 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 119.99618 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47532 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.47258 * 120.00027 * 16 14 12 19 19 H 1.48507 * 109.46778 * 239.99811 * 16 14 12 20 20 C 1.38130 * 119.92632 * 0.02562 * 8 6 4 21 21 H 1.08999 * 109.47087 * 270.27352 * 1 2 3 22 22 H 1.09008 * 109.47414 * 30.26651 * 1 2 3 23 23 H 1.08997 * 109.47593 * 150.26919 * 1 2 3 24 24 H 1.07998 * 119.96404 * 0.02562 * 3 2 1 25 25 H 1.09002 * 109.47152 * 269.72639 * 5 4 3 26 26 H 1.09001 * 109.46980 * 149.72740 * 5 4 3 27 27 H 1.09004 * 109.47113 * 29.72721 * 5 4 3 28 28 H 0.96996 * 119.99953 * 359.97438 * 7 6 4 29 29 H 0.97007 * 119.99764 * 179.97438 * 7 6 4 30 30 H 1.00894 * 111.00317 * 300.00687 * 11 9 8 31 31 H 1.00900 * 110.99786 * 63.95948 * 11 9 8 32 32 H 0.97001 * 119.99577 * 180.02562 * 15 14 12 33 33 H 1.07991 * 119.96574 * 179.97438 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2022 -0.0058 5 6 4.3288 2.5087 -0.0120 6 6 4.2740 -0.0001 -0.0002 7 7 5.6707 -0.0002 -0.0006 8 6 3.5779 -1.2020 0.0056 9 6 4.3288 -2.5086 0.0123 10 1 5.2400 -2.4071 -0.5772 11 7 3.4847 -3.5615 -0.5680 12 6 4.6859 -2.8754 1.4297 13 1 4.3975 -2.2274 2.2442 14 6 5.3807 -4.0383 1.6867 15 7 5.7322 -4.8271 0.6949 16 14 5.8227 -4.4932 3.4437 17 1 5.3170 -3.4469 4.3682 18 1 5.2044 -5.7990 3.7875 19 1 7.2987 -4.5952 3.5722 20 6 2.1966 -1.1984 0.0052 21 1 -0.3633 0.0049 1.0276 22 1 -0.3634 0.8876 -0.5180 23 1 -0.3634 -0.8923 -0.5096 24 1 1.6552 2.1329 0.0004 25 1 4.5098 2.8188 -1.0412 26 1 5.2815 2.3826 0.5023 27 1 3.7383 3.2697 0.4983 28 1 6.1557 0.8398 -0.0053 29 1 6.1557 -0.8403 0.0037 30 1 2.6332 -3.6749 -0.0389 31 1 3.2848 -3.3707 -1.5384 32 1 6.2207 -5.6454 0.8758 33 1 1.6548 -2.1325 0.0093 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104494517.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:39 Heat of formation + Delta-G solvation = 14.656859 kcal Electronic energy + Delta-G solvation = -14957.542980 eV Core-core repulsion = 12596.262440 eV Total energy + Delta-G solvation = -2361.280540 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.22858 -34.85919 -34.46828 -31.92941 -31.00117 -29.39775 -26.59961 -26.16781 -24.91102 -22.78701 -19.78504 -19.31923 -16.60871 -16.47751 -16.18337 -14.63768 -14.08525 -13.78848 -13.71677 -13.54200 -13.05450 -12.84907 -12.68542 -12.33590 -12.13119 -11.75278 -11.52536 -11.21268 -10.91360 -10.76735 -10.49594 -10.29743 -9.69460 -9.62349 -9.18187 -8.42885 -7.80019 -7.02742 -6.57998 -5.85233 -4.00269 2.15172 2.32738 3.32475 3.41365 3.45995 4.43855 4.59573 4.68001 5.32341 5.36295 5.44930 5.61768 5.71363 5.76171 5.88140 6.00498 6.08651 6.10625 6.21105 6.35586 6.45728 6.70125 6.81104 7.01133 7.14498 7.32119 7.59644 7.67498 7.94299 8.19636 8.29921 8.54435 8.69896 9.06011 9.19774 9.68474 11.17645 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.029137 B = 0.009268 C = 0.008221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.746532 B = 3020.482794 C = 3405.041667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.152 4.152 3 C -0.096 4.096 4 C -0.179 4.179 5 C -0.097 4.097 6 C 0.220 3.780 7 N -0.872 5.872 8 C -0.143 4.143 9 C 0.262 3.738 10 H 0.041 0.959 11 N -0.810 5.810 12 C -0.524 4.524 13 H 0.052 0.948 14 C 0.082 3.918 15 N -0.848 5.848 16 Si 0.881 3.119 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.286 1.286 20 C -0.088 4.088 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.106 0.894 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.385 0.615 29 H 0.408 0.592 30 H 0.318 0.682 31 H 0.297 0.703 32 H 0.254 0.746 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.482 10.513 -2.306 11.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.154 4.154 3 C -0.114 4.114 4 C -0.184 4.184 5 C -0.154 4.154 6 C 0.114 3.886 7 N -0.413 5.413 8 C -0.149 4.149 9 C 0.152 3.848 10 H 0.058 0.942 11 N -0.337 5.337 12 C -0.563 4.563 13 H 0.070 0.930 14 C -0.124 4.124 15 N -0.483 5.483 16 Si 0.709 3.291 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.107 4.107 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.124 0.876 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.213 0.787 29 H 0.239 0.761 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.792 9.804 -2.200 10.740 hybrid contribution -0.101 0.462 0.955 1.066 sum -3.893 10.267 -1.245 11.050 Atomic orbital electron populations 1.20577 0.92465 1.01368 1.01094 1.19490 0.95033 0.93254 1.07650 1.20343 0.92667 0.96591 1.01828 1.19221 0.93842 0.93271 1.12064 1.20490 0.99346 0.94592 1.00934 1.17445 0.84162 0.92579 0.94378 1.42620 1.03412 1.10694 1.84570 1.21226 0.94225 0.97160 1.02325 1.17945 0.90556 0.80588 0.95687 0.94178 1.59184 1.21393 1.50130 1.02944 1.20894 1.37207 1.07078 0.91108 0.92956 1.24970 0.95188 0.96206 0.96068 1.70118 1.36447 1.11714 1.30019 0.86735 0.77901 0.78408 0.86022 1.19970 1.21093 1.21213 1.20582 0.93470 0.96717 0.99919 0.92486 0.92810 0.92475 0.87588 0.92531 0.92635 0.92397 0.78712 0.76085 0.86939 0.89239 0.93590 0.86985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 10.01 36.01 0.36 -1.01 16 2 C -0.15 -2.67 5.88 -104.59 -0.62 -3.28 16 3 C -0.10 -1.62 9.35 -39.61 -0.37 -1.99 16 4 C -0.18 -3.12 5.90 -104.42 -0.62 -3.74 16 5 C -0.10 -1.31 9.57 36.01 0.34 -0.96 16 6 C 0.22 4.34 6.72 -83.79 -0.56 3.78 16 7 N -0.87 -15.49 8.89 32.41 0.29 -15.20 16 8 C -0.14 -3.09 5.00 -104.42 -0.52 -3.61 16 9 C 0.26 6.40 2.28 -70.02 -0.16 6.24 16 10 H 0.04 1.06 6.81 -51.93 -0.35 0.71 16 11 N -0.81 -19.11 8.14 -6.65 -0.05 -19.17 16 12 C -0.52 -14.21 8.71 -34.44 -0.30 -14.51 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 14 C 0.08 2.26 5.39 -17.82 -0.10 2.17 16 15 N -0.85 -24.36 12.77 55.43 0.71 -23.66 16 16 Si 0.88 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 C -0.09 -1.74 8.92 -39.61 -0.35 -2.09 16 21 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.05 0.65 8.09 -51.92 -0.42 0.23 16 23 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 24 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.71 6.55 -51.93 -0.34 0.37 16 27 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 28 H 0.39 5.59 6.83 -40.82 -0.28 5.31 16 29 H 0.41 7.88 6.94 -40.82 -0.28 7.60 16 30 H 0.32 7.22 7.20 -39.29 -0.28 6.94 16 31 H 0.30 6.36 9.06 -39.29 -0.36 6.00 16 32 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.11 2.15 6.29 -52.49 -0.33 1.82 16 LS Contribution 272.71 15.07 4.11 4.11 Total: -1.00 -29.65 272.71 -7.15 -36.81 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -4.29 Total: 19.76 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -2.89 Total: -19.00 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.94 Total: -58.02 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.65 -7.15 -36.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104494517.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.462 kcal (2) G-P(sol) polarization free energy of solvation -29.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds