Wall clock time and date at job start Mon Mar 30 2020 02:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38307 * 119.92688 * 2 1 4 4 C 1.38078 * 120.07218 * 180.27824 * 3 2 1 5 5 C 1.50703 * 120.03722 * 179.72609 * 4 3 2 6 6 C 1.38929 * 119.92697 * 359.45370 * 4 3 2 7 7 N 1.39675 * 120.07662 * 180.25413 * 6 4 3 8 8 C 1.38891 * 119.85058 * 0.27061 * 6 4 3 9 9 C 1.50701 * 120.04089 * 180.02562 * 8 6 4 10 10 H 1.09003 * 109.47095 * 325.01000 * 9 8 6 11 11 N 1.46891 * 109.47472 * 205.00178 * 9 8 6 12 12 C 1.50703 * 109.46559 * 85.00432 * 9 8 6 13 13 H 1.08001 * 120.00336 * 0.02562 * 12 9 8 14 14 C 1.37887 * 119.99691 * 180.02562 * 12 9 8 15 15 N 1.31515 * 120.00026 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 119.99618 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47532 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.47258 * 120.00027 * 16 14 12 19 19 H 1.48507 * 109.46778 * 239.99811 * 16 14 12 20 20 C 1.38130 * 119.92632 * 0.02562 * 8 6 4 21 21 H 1.08999 * 109.47087 * 270.27352 * 1 2 3 22 22 H 1.09008 * 109.47414 * 30.26651 * 1 2 3 23 23 H 1.08997 * 109.47593 * 150.26919 * 1 2 3 24 24 H 1.07998 * 119.96404 * 0.02562 * 3 2 1 25 25 H 1.09002 * 109.47152 * 269.72639 * 5 4 3 26 26 H 1.09001 * 109.46980 * 149.72740 * 5 4 3 27 27 H 1.09004 * 109.47113 * 29.72721 * 5 4 3 28 28 H 0.96996 * 119.99953 * 359.97438 * 7 6 4 29 29 H 0.97007 * 119.99764 * 179.97438 * 7 6 4 30 30 H 1.00894 * 111.00317 * 300.00687 * 11 9 8 31 31 H 1.00900 * 110.99786 * 63.95948 * 11 9 8 32 32 H 0.97001 * 119.99577 * 180.02562 * 15 14 12 33 33 H 1.07991 * 119.96574 * 179.97438 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2022 -0.0058 5 6 4.3288 2.5087 -0.0120 6 6 4.2740 -0.0001 -0.0002 7 7 5.6707 -0.0002 -0.0006 8 6 3.5779 -1.2020 0.0056 9 6 4.3288 -2.5086 0.0123 10 1 5.2400 -2.4071 -0.5772 11 7 3.4847 -3.5615 -0.5680 12 6 4.6859 -2.8754 1.4297 13 1 4.3975 -2.2274 2.2442 14 6 5.3807 -4.0383 1.6867 15 7 5.7322 -4.8271 0.6949 16 14 5.8227 -4.4932 3.4437 17 1 5.3170 -3.4469 4.3682 18 1 5.2044 -5.7990 3.7875 19 1 7.2987 -4.5952 3.5722 20 6 2.1966 -1.1984 0.0052 21 1 -0.3633 0.0049 1.0276 22 1 -0.3634 0.8876 -0.5180 23 1 -0.3634 -0.8923 -0.5096 24 1 1.6552 2.1329 0.0004 25 1 4.5098 2.8188 -1.0412 26 1 5.2815 2.3826 0.5023 27 1 3.7383 3.2697 0.4983 28 1 6.1557 0.8398 -0.0053 29 1 6.1557 -0.8403 0.0037 30 1 2.6332 -3.6749 -0.0389 31 1 3.2848 -3.3707 -1.5384 32 1 6.2207 -5.6454 0.8758 33 1 1.6548 -2.1325 0.0093 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104494517.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:39 Heat of formation + Delta-G solvation = -5.493588 kcal Electronic energy + Delta-G solvation = -14958.416769 eV Core-core repulsion = 12596.262440 eV Total energy + Delta-G solvation = -2362.154329 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.66597 -36.59469 -35.86556 -33.83859 -32.44456 -30.87248 -28.15295 -27.80188 -26.31109 -24.55265 -21.12798 -20.96024 -18.47976 -17.98868 -17.72921 -16.61411 -15.91988 -15.29713 -15.09227 -14.84332 -14.52748 -14.21339 -14.11011 -13.91768 -13.32964 -13.21545 -12.98203 -12.83076 -12.58150 -12.49253 -12.25603 -11.74412 -11.42367 -11.21459 -10.98391 -10.54841 -9.30088 -8.85709 -8.08518 -7.88214 -6.16613 0.71108 0.90822 1.38974 1.42603 1.52463 2.46217 3.10844 3.24751 3.30145 4.10588 4.15378 4.30050 4.44070 4.56943 4.61196 4.78967 4.87980 4.95204 4.97062 5.00126 5.14932 5.27043 5.37219 5.46999 5.72560 5.76398 5.83203 6.01521 6.21412 6.29503 6.69036 6.82340 7.11178 7.19654 7.30110 7.55365 9.06089 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.029137 B = 0.009268 C = 0.008221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.746532 B = 3020.482794 C = 3405.041667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.156 4.156 3 C -0.096 4.096 4 C -0.180 4.180 5 C -0.095 4.095 6 C 0.198 3.802 7 N -0.869 5.869 8 C -0.176 4.176 9 C 0.271 3.729 10 H 0.013 0.987 11 N -0.820 5.820 12 C -0.528 4.528 13 H 0.035 0.965 14 C 0.037 3.963 15 N -0.878 5.878 16 Si 0.943 3.057 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.279 1.279 20 C -0.103 4.103 21 H 0.065 0.935 22 H 0.077 0.923 23 H 0.060 0.940 24 H 0.140 0.860 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.399 0.601 29 H 0.398 0.602 30 H 0.321 0.679 31 H 0.309 0.691 32 H 0.254 0.746 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.438 12.443 -1.890 13.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.158 4.158 3 C -0.114 4.114 4 C -0.185 4.185 5 C -0.152 4.152 6 C 0.092 3.908 7 N -0.410 5.410 8 C -0.182 4.182 9 C 0.161 3.839 10 H 0.030 0.970 11 N -0.348 5.348 12 C -0.567 4.567 13 H 0.053 0.947 14 C -0.166 4.166 15 N -0.514 5.514 16 Si 0.769 3.231 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.205 1.205 20 C -0.122 4.122 21 H 0.083 0.917 22 H 0.096 0.904 23 H 0.079 0.921 24 H 0.158 0.842 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.230 0.770 29 H 0.227 0.773 30 H 0.134 0.866 31 H 0.119 0.881 32 H 0.063 0.937 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.748 11.765 -1.784 12.812 hybrid contribution 0.145 -0.056 0.792 0.807 sum -4.602 11.710 -0.992 12.621 Atomic orbital electron populations 1.20618 0.89796 1.02786 1.02042 1.19902 0.97072 0.92595 1.06243 1.20807 0.92688 0.97707 1.00198 1.19700 0.94545 0.93993 1.10223 1.20560 0.99422 0.92904 1.02307 1.17687 0.84840 0.93030 0.95231 1.42549 1.03017 1.10918 1.84560 1.20996 0.95074 0.96495 1.05667 1.17582 0.90120 0.82463 0.93744 0.96952 1.59042 1.21496 1.50484 1.03729 1.21044 1.36854 1.06695 0.92094 0.94677 1.25616 0.95283 0.96273 0.99467 1.70227 1.37395 1.12090 1.31728 0.85780 0.77784 0.77766 0.81746 1.20124 1.20957 1.20508 1.20682 0.92953 0.97813 1.00743 0.91654 0.90449 0.92082 0.84233 0.90987 0.92153 0.90350 0.77013 0.77308 0.86609 0.88052 0.93657 0.87368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.38 10.01 71.24 0.71 -1.67 16 2 C -0.16 -5.16 5.88 -19.84 -0.12 -5.27 16 3 C -0.10 -2.94 9.35 22.25 0.21 -2.73 16 4 C -0.18 -5.87 5.90 -19.74 -0.12 -5.99 16 5 C -0.10 -2.26 9.57 71.24 0.68 -1.58 16 6 C 0.20 7.75 6.72 38.21 0.26 8.01 16 7 N -0.87 -31.00 8.89 -51.37 -0.46 -31.46 16 8 C -0.18 -7.71 5.00 -19.73 -0.10 -7.81 16 9 C 0.27 13.65 2.28 43.43 0.10 13.75 16 10 H 0.01 0.70 6.81 -2.39 -0.02 0.68 16 11 N -0.82 -39.76 8.14 -174.96 -1.42 -41.18 16 12 C -0.53 -29.31 8.71 25.60 0.22 -29.09 16 13 H 0.03 2.03 7.74 -2.91 -0.02 2.00 16 14 C 0.04 2.07 5.39 84.66 0.46 2.53 16 15 N -0.88 -51.37 12.77 21.45 0.27 -51.10 16 16 Si 0.94 44.49 29.54 68.60 2.03 46.51 16 17 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 18 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 C -0.10 -4.06 8.92 22.25 0.20 -3.86 16 21 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 22 H 0.08 1.56 8.09 -2.38 -0.02 1.54 16 23 H 0.06 1.46 8.08 -2.39 -0.02 1.44 16 24 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 1.37 6.55 -2.39 -0.02 1.36 16 27 H 0.08 1.56 8.08 -2.38 -0.02 1.54 16 28 H 0.40 11.31 6.83 -92.71 -0.63 10.67 16 29 H 0.40 15.91 6.94 -92.70 -0.64 15.27 16 30 H 0.32 14.97 7.20 -89.70 -0.65 14.32 16 31 H 0.31 13.57 9.06 -89.69 -0.81 12.76 16 32 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 33 H 0.11 4.20 6.29 -2.92 -0.02 4.18 16 Total: -1.00 -63.64 272.71 1.35 -62.30 By element: Atomic # 1 Polarization: 50.22 SS G_CDS: -1.58 Total: 48.64 kcal Atomic # 6 Polarization: -36.22 SS G_CDS: 2.50 Total: -33.72 kcal Atomic # 7 Polarization: -122.13 SS G_CDS: -1.61 Total: -123.74 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -63.64 1.35 -62.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104494517.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.805 kcal (2) G-P(sol) polarization free energy of solvation -63.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds