Wall clock time and date at job start Mon Mar 30 2020 03:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39863 * 126.04066 * 2 1 4 4 N 1.30839 * 108.20367 * 180.02562 * 3 2 1 5 5 N 1.40089 * 108.20528 * 0.02562 * 4 3 2 6 6 C 1.46498 * 126.03937 * 179.97438 * 5 4 3 7 7 H 1.09001 * 110.01253 * 334.32531 * 6 5 4 8 8 C 1.53872 * 110.03418 * 212.93129 * 6 5 4 9 9 C 1.54265 * 106.59905 * 240.66696 * 8 6 5 10 10 C 1.54894 * 104.19686 * 23.61090 * 9 8 6 11 11 C 1.54265 * 110.07213 * 95.73985 * 6 5 4 12 12 H 1.08998 * 110.48610 * 214.37814 * 11 6 5 13 13 C 1.50702 * 110.48619 * 337.01936 * 11 6 5 14 14 H 1.07999 * 119.99851 * 94.40711 * 13 11 6 15 15 C 1.37875 * 119.99910 * 274.40017 * 13 11 6 16 16 N 1.31517 * 119.99683 * 185.03469 * 15 13 11 17 17 Si 1.86799 * 120.00119 * 5.04070 * 15 13 11 18 18 H 1.48495 * 109.47449 * 84.81426 * 17 15 13 19 19 H 1.48502 * 109.46976 * 204.81648 * 17 15 13 20 20 H 1.48498 * 109.46787 * 324.81126 * 17 15 13 21 21 C 1.34952 * 107.92189 * 0.25861 * 5 4 3 22 22 H 1.08999 * 109.47403 * 90.01960 * 1 2 3 23 23 H 1.08998 * 109.47126 * 210.01861 * 1 2 3 24 24 H 1.08999 * 109.46896 * 330.02018 * 1 2 3 25 25 H 1.08003 * 125.90023 * 359.97438 * 3 2 1 26 26 H 1.09000 * 110.03094 * 359.95138 * 8 6 5 27 27 H 1.09000 * 110.03491 * 121.38010 * 8 6 5 28 28 H 1.09000 * 110.48654 * 142.28422 * 9 8 6 29 29 H 1.08998 * 110.48724 * 264.80179 * 9 8 6 30 30 H 1.09000 * 110.75273 * 80.36929 * 10 9 8 31 31 H 1.08999 * 110.75617 * 203.56031 * 10 9 8 32 32 H 0.97008 * 119.99956 * 179.97438 * 16 15 13 33 33 H 1.07996 * 126.12766 * 179.73338 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1309 0.0000 4 7 3.5754 0.7302 -0.0006 5 7 3.5844 -0.6707 -0.0015 6 6 4.7745 -1.5250 -0.0029 7 1 5.6155 -0.9923 -0.4469 8 6 4.4947 -2.8175 -0.7895 9 6 4.6810 -3.9853 0.2011 10 6 4.4561 -3.3428 1.5925 11 6 5.1211 -1.9524 1.4383 12 1 6.2010 -2.0300 1.5639 13 6 4.5420 -0.9778 2.4312 14 1 3.5788 -1.1719 2.8795 15 6 5.2418 0.1616 2.7672 16 7 4.7843 0.9615 3.7055 17 14 6.8397 0.5692 1.8897 18 1 6.5408 1.2920 0.6274 19 1 7.6798 1.4265 2.7640 20 1 7.5687 -0.6869 1.5802 21 6 2.3031 -1.0942 -0.0073 22 1 -0.3634 -0.0004 -1.0276 23 1 -0.3633 -0.8898 0.5141 24 1 -0.3633 0.8902 0.5135 25 1 1.9951 2.1578 -0.0004 26 1 3.4731 -2.8096 -1.1695 27 1 5.1999 -2.9122 -1.6152 28 1 3.9409 -4.7639 0.0165 29 1 5.6891 -4.3927 0.1253 30 1 3.3915 -3.2406 1.8032 31 1 4.9484 -3.9254 2.3711 32 1 5.2769 1.7630 3.9423 33 1 1.9723 -2.1222 -0.0135 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167403200.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:53 Heat of formation + Delta-G solvation = 48.217985 kcal Electronic energy + Delta-G solvation = -15594.589602 eV Core-core repulsion = 13234.764382 eV Total energy + Delta-G solvation = -2359.825220 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.96930 -38.90252 -34.58165 -33.31523 -31.96162 -30.76534 -28.95141 -26.75354 -25.56002 -22.59820 -21.68625 -20.60497 -20.35271 -19.00605 -17.29194 -16.76956 -16.15018 -15.44671 -15.12317 -15.02324 -14.59500 -14.20058 -13.91278 -13.63324 -13.49487 -12.98841 -12.91595 -12.55018 -12.29559 -12.14454 -11.92625 -11.80642 -11.44145 -11.27806 -11.16315 -11.11234 -10.68326 -9.94069 -8.85014 -8.25947 -6.25838 1.24783 1.32955 1.37122 1.38778 2.03647 2.16633 2.35541 3.11779 3.66555 3.89016 4.08454 4.14283 4.23201 4.50599 4.59351 4.63232 4.66133 4.81469 4.86206 4.89482 5.05343 5.07275 5.16068 5.23066 5.28695 5.32920 5.44641 5.51289 5.58593 5.67592 6.09509 6.29808 6.60966 6.78092 7.16730 7.39979 8.91345 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.021665 B = 0.015904 C = 0.011298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.087863 B = 1760.112163 C = 2477.686933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.269 4.269 3 C 0.012 3.988 4 N -0.327 5.327 5 N -0.318 5.318 6 C 0.136 3.864 7 H 0.064 0.936 8 C -0.125 4.125 9 C -0.111 4.111 10 C -0.107 4.107 11 C -0.014 4.014 12 H 0.049 0.951 13 C -0.483 4.483 14 H 0.023 0.977 15 C 0.038 3.962 16 N -0.946 5.946 17 Si 0.915 3.085 18 H -0.271 1.271 19 H -0.297 1.297 20 H -0.239 1.239 21 C 0.053 3.947 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.180 0.820 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.258 0.742 33 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.519 -8.695 -10.840 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.281 4.281 3 C -0.172 4.172 4 N -0.149 5.149 5 N -0.098 5.098 6 C 0.033 3.967 7 H 0.083 0.917 8 C -0.163 4.163 9 C -0.148 4.148 10 C -0.145 4.145 11 C -0.034 4.034 12 H 0.067 0.933 13 C -0.520 4.520 14 H 0.041 0.959 15 C -0.159 4.159 16 N -0.587 5.587 17 Si 0.741 3.259 18 H -0.197 1.197 19 H -0.224 1.224 20 H -0.162 1.162 21 C -0.095 4.095 22 H 0.090 0.910 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.197 0.803 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.109 -8.259 -10.753 13.722 hybrid contribution -0.024 0.912 0.408 1.000 sum -2.133 -7.347 -10.345 12.867 Atomic orbital electron populations 1.19960 0.87641 1.02044 1.01819 1.20365 0.98230 0.91405 1.18115 1.23883 0.90501 1.00427 1.02422 1.77165 1.22317 0.91297 1.24121 1.48350 1.05614 1.03274 1.52576 1.22475 0.84368 0.90196 0.99651 0.91727 1.22590 1.03658 0.91681 0.98388 1.22354 1.03179 0.96540 0.92729 1.22406 0.99657 0.94792 0.97642 1.20549 0.97118 0.94863 0.90889 0.93297 1.20787 1.03652 1.04817 1.22777 0.95902 1.25543 1.00183 0.95851 0.94353 1.70045 1.41511 1.14748 1.32390 0.86262 0.80880 0.79392 0.79346 1.19675 1.22441 1.16245 1.22386 0.84281 1.00435 1.02397 0.91016 0.91852 0.92319 0.80258 0.89895 0.88753 0.89077 0.90048 0.93302 0.91820 0.93333 0.79752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.56 10.37 71.24 0.74 -0.82 16 2 C -0.27 -10.08 6.10 -20.15 -0.12 -10.20 16 3 C 0.01 0.52 11.96 85.23 1.02 1.53 16 4 N -0.33 -15.99 12.40 -57.02 -0.71 -16.70 16 5 N -0.32 -13.80 2.32 -324.06 -0.75 -14.55 16 6 C 0.14 5.36 3.28 45.71 0.15 5.51 16 7 H 0.06 2.68 7.37 -2.39 -0.02 2.66 16 8 C -0.12 -3.39 6.31 31.32 0.20 -3.20 16 9 C -0.11 -2.72 6.83 31.67 0.22 -2.50 16 10 C -0.11 -3.73 6.32 31.89 0.20 -3.53 16 11 C -0.01 -0.64 2.23 -10.46 -0.02 -0.66 16 12 H 0.05 2.18 5.93 -2.39 -0.01 2.17 16 13 C -0.48 -27.24 7.58 25.60 0.19 -27.05 16 14 H 0.02 1.47 7.99 -2.91 -0.02 1.45 16 15 C 0.04 2.29 5.47 84.65 0.46 2.76 16 16 N -0.95 -61.52 13.96 21.45 0.30 -61.22 16 17 Si 0.92 46.62 26.45 68.60 1.81 48.44 16 18 H -0.27 -14.13 7.11 99.48 0.71 -13.42 16 19 H -0.30 -15.23 7.11 99.48 0.71 -14.53 16 20 H -0.24 -10.82 6.17 99.48 0.61 -10.21 16 21 C 0.05 1.99 10.05 83.54 0.84 2.83 16 22 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.18 6.67 8.06 -2.91 -0.02 6.65 16 26 H 0.08 2.08 6.19 -2.39 -0.01 2.07 16 27 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.80 8.00 -2.39 -0.02 1.78 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.26 16.06 8.31 -92.70 -0.77 15.29 16 33 H 0.19 5.58 7.33 -2.91 -0.02 5.56 16 Total: -1.00 -72.99 268.19 5.52 -67.47 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.99 Total: 11.89 kcal Atomic # 6 Polarization: -39.21 SS G_CDS: 3.87 Total: -35.33 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -1.16 Total: -92.47 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.81 Total: 48.44 kcal Total: -72.99 5.52 -67.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167403200.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.692 kcal (2) G-P(sol) polarization free energy of solvation -72.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds