Wall clock time and date at job start Mon Mar 30 2020 02:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38223 * 119.94719 * 2 1 4 4 C 1.38082 * 120.16165 * 179.72775 * 3 2 1 5 5 C 1.39163 * 120.05464 * 0.54604 * 4 3 2 6 6 N 1.39295 * 120.04737 * 179.75221 * 5 4 3 7 7 C 1.36859 * 120.00361 * 359.97438 * 6 5 4 8 8 H 1.08001 * 119.99648 * 0.02562 * 7 6 5 9 9 C 1.38794 * 120.00199 * 180.02562 * 7 6 5 10 10 N 1.31592 * 119.99621 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99824 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47083 * 60.00086 * 11 9 7 13 13 H 1.48502 * 109.46863 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.46906 * 299.99843 * 11 9 7 15 15 C 1.38917 * 119.89826 * 359.72655 * 5 4 3 16 16 C 1.38742 * 119.83951 * 0.02562 * 15 5 4 17 17 N 1.39677 * 120.03150 * 180.02562 * 16 15 5 18 18 C 1.46907 * 110.99430 * 299.97319 * 17 16 15 19 19 C 1.46891 * 111.00607 * 63.92569 * 17 16 15 20 20 H 1.09002 * 109.47152 * 269.72725 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.72825 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.72806 * 1 2 3 23 23 H 1.08002 * 119.91968 * 359.97438 * 3 2 1 24 24 H 1.07996 * 119.97056 * 180.27434 * 4 3 2 25 25 H 0.97003 * 119.99831 * 179.97438 * 6 5 4 26 26 H 0.97000 * 119.99334 * 180.02562 * 10 9 7 27 27 H 1.08002 * 120.08376 * 180.02562 * 15 5 4 28 28 H 1.08998 * 109.47415 * 60.00599 * 18 17 16 29 29 H 1.09003 * 109.46517 * 180.02562 * 18 17 16 30 30 H 1.08997 * 109.47022 * 299.99548 * 18 17 16 31 31 H 1.08998 * 109.47132 * 59.99968 * 19 17 16 32 32 H 1.09000 * 109.47804 * 180.02562 * 19 17 16 33 33 H 1.09002 * 109.47019 * 300.00687 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1977 0.0000 4 6 3.5778 1.2029 0.0057 5 6 4.2793 0.0010 -0.0001 6 7 5.6723 0.0064 0.0004 7 6 6.3520 1.1943 0.0061 8 1 5.8084 2.1274 0.0105 9 6 7.7400 1.1996 0.0060 10 7 8.4022 0.0625 0.0001 11 14 8.6676 2.8210 0.0144 12 1 8.3059 3.5919 1.2310 13 1 10.1287 2.5553 0.0124 14 1 8.3058 3.6045 -1.1940 15 6 3.5883 -1.2041 -0.0058 16 6 2.2009 -1.2043 -0.0062 17 7 1.5020 -2.4136 -0.0114 18 6 1.8324 -3.2073 -1.2027 19 6 1.7600 -3.1762 1.2173 20 1 -0.3633 -0.0049 1.0277 21 1 -0.3633 -0.8876 -0.5181 22 1 -0.3633 0.8924 -0.5096 23 1 1.6549 2.1318 -0.0004 24 1 4.1138 2.1404 0.0101 25 1 6.1605 -0.8318 -0.0032 26 1 9.3722 0.0663 0.0004 27 1 4.1297 -2.1386 -0.0098 28 1 2.9011 -3.4213 -1.2119 29 1 1.2742 -4.1434 -1.1817 30 1 1.5664 -2.6461 -2.0984 31 1 1.4416 -2.5923 2.0808 32 1 1.2041 -4.1133 1.1870 33 1 2.8262 -3.3889 1.2958 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227990730.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:05 Heat of formation + Delta-G solvation = 31.307402 kcal Electronic energy + Delta-G solvation = -14681.180531 eV Core-core repulsion = 12320.622013 eV Total energy + Delta-G solvation = -2360.558518 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.17423 -36.59438 -34.63615 -32.22260 -29.87061 -29.08685 -27.25720 -25.91499 -23.91693 -23.70111 -20.90523 -19.64582 -17.60360 -16.65633 -15.03815 -14.84778 -14.61793 -14.48735 -13.98957 -13.54477 -12.99668 -12.76423 -12.58598 -12.14303 -11.89954 -11.77096 -11.62692 -11.40567 -11.35185 -11.09163 -10.76827 -10.51172 -10.38428 -9.87474 -9.79741 -8.62064 -8.07532 -7.83330 -6.60565 -6.54171 -3.72805 2.33302 2.58584 3.16476 3.17689 3.18512 4.06121 4.37828 4.63009 5.21318 5.27061 5.48170 5.66022 5.74858 5.77547 5.85495 6.00760 6.09558 6.13692 6.14001 6.34378 6.36070 6.50803 6.60911 6.71016 7.03287 7.23620 7.26939 7.40777 7.49055 7.55923 7.73110 7.83225 8.26258 8.77775 9.38083 9.57081 10.63015 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.041067 B = 0.007120 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.643288 B = 3931.539706 C = 4432.180126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.191 4.191 3 C -0.059 4.059 4 C -0.220 4.220 5 C 0.217 3.783 6 N -0.566 5.566 7 C -0.300 4.300 8 H 0.101 0.899 9 C 0.018 3.982 10 N -0.897 5.897 11 Si 0.931 3.069 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.273 1.273 15 C -0.267 4.267 16 C 0.138 3.862 17 N -0.506 5.506 18 C 0.030 3.970 19 C 0.032 3.968 20 H 0.043 0.957 21 H 0.060 0.940 22 H 0.041 0.959 23 H 0.104 0.896 24 H 0.114 0.886 25 H 0.397 0.603 26 H 0.274 0.726 27 H 0.099 0.901 28 H 0.029 0.971 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.584 -2.714 0.006 9.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.196 4.196 3 C -0.079 4.079 4 C -0.244 4.244 5 C 0.096 3.904 6 N -0.169 5.169 7 C -0.430 4.430 8 H 0.119 0.881 9 C -0.185 4.185 10 N -0.535 5.535 11 Si 0.757 3.243 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.198 1.198 15 C -0.294 4.294 16 C 0.044 3.956 17 N -0.226 5.226 18 C -0.117 4.117 19 C -0.116 4.116 20 H 0.062 0.938 21 H 0.079 0.921 22 H 0.060 0.940 23 H 0.122 0.878 24 H 0.132 0.868 25 H 0.232 0.768 26 H 0.084 0.916 27 H 0.117 0.883 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -9.594 -2.498 -0.011 9.914 hybrid contribution 1.834 0.144 0.043 1.841 sum -7.760 -2.354 0.032 8.109 Atomic orbital electron populations 1.20276 0.92500 1.00639 1.00057 1.18962 0.94805 0.91292 1.14541 1.20476 0.93423 0.96133 0.97825 1.20477 0.93449 0.96672 1.13785 1.17684 0.84206 0.93192 0.95354 1.40975 1.01073 1.08744 1.66113 1.19675 0.89324 0.86471 1.47520 0.88150 1.25266 0.96705 0.98814 0.97698 1.69678 1.08755 1.25655 1.49442 0.85905 0.78290 0.81016 0.79042 1.19802 1.20785 1.19806 1.20546 0.94104 0.95900 1.18867 1.18051 0.89329 0.89373 0.98867 1.59681 1.56799 1.03604 1.02541 1.22377 0.99066 0.97178 0.93105 1.22358 0.99368 0.97474 0.92358 0.93841 0.92082 0.94035 0.87756 0.86773 0.76827 0.91629 0.88320 0.95240 0.91935 0.91469 0.91474 0.91927 0.95293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 9.76 36.01 0.35 -0.87 16 2 C -0.19 -3.61 5.90 -104.35 -0.62 -4.23 16 3 C -0.06 -1.14 9.68 -39.64 -0.38 -1.52 16 4 C -0.22 -4.82 9.30 -39.30 -0.37 -5.19 16 5 C 0.22 5.04 6.62 -83.87 -0.55 4.49 16 6 N -0.57 -14.38 5.43 -9.62 -0.05 -14.43 16 7 C -0.30 -7.89 9.56 -15.10 -0.14 -8.03 16 8 H 0.10 2.53 5.68 -52.49 -0.30 2.23 16 9 C 0.02 0.46 5.50 -17.45 -0.10 0.36 16 10 N -0.90 -24.51 13.05 55.49 0.72 -23.79 16 11 Si 0.93 20.21 29.55 -169.99 -5.02 15.19 16 12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 15 C -0.27 -5.66 8.41 -39.14 -0.33 -5.99 16 16 C 0.14 2.65 4.71 -83.82 -0.39 2.26 16 17 N -0.51 -8.29 3.93 -186.89 -0.73 -9.02 16 18 C 0.03 0.44 9.34 60.07 0.56 1.00 16 19 C 0.03 0.46 9.38 60.06 0.56 1.02 16 20 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 21 H 0.06 0.94 7.45 -51.93 -0.39 0.56 16 22 H 0.04 0.59 8.08 -51.93 -0.42 0.17 16 23 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 24 H 0.11 2.50 5.95 -52.49 -0.31 2.19 16 25 H 0.40 10.30 7.90 -40.82 -0.32 9.97 16 26 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.10 2.04 7.02 -52.49 -0.37 1.68 16 28 H 0.03 0.45 7.12 -51.93 -0.37 0.08 16 29 H 0.06 0.75 8.12 -51.93 -0.42 0.32 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.75 8.12 -51.93 -0.42 0.32 16 33 H 0.03 0.44 7.34 -51.93 -0.38 0.06 16 LS Contribution 275.02 15.07 4.14 4.14 Total: -1.00 -27.29 275.02 -6.88 -34.16 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -4.53 Total: 10.44 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -1.41 Total: -16.70 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.06 Total: -47.24 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.29 -6.88 -34.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227990730.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.472 kcal (2) G-P(sol) polarization free energy of solvation -27.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds