Wall clock time and date at job start Mon Mar 30 2020 02:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86799 * 120.00280 * 2 1 4 4 H 1.48495 * 109.47053 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47213 * 119.99953 * 3 2 1 6 6 H 1.48501 * 109.46967 * 239.99502 * 3 2 1 7 7 C 1.40233 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99953 * 4.08066 * 7 2 1 9 9 C 1.39996 * 120.00270 * 184.08842 * 7 2 1 10 10 N 1.32981 * 125.96427 * 6.13176 * 9 7 2 11 11 C 1.32750 * 109.22902 * 179.97438 * 10 9 7 12 12 C 1.36224 * 108.62025 * 0.02562 * 11 10 9 13 13 C 1.50695 * 126.40264 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.47099 * 84.98010 * 13 12 11 15 15 C 1.53000 * 109.47274 * 179.97438 * 14 13 12 16 16 C 1.52996 * 109.46990 * 59.99808 * 15 14 13 17 17 C 1.53001 * 109.47154 * 299.99662 * 16 15 14 18 18 C 1.52992 * 109.47582 * 324.97655 * 13 12 11 19 19 N 1.36418 * 107.18804 * 359.77078 * 12 11 10 20 20 H 0.97000 * 126.55107 * 180.22332 * 19 12 11 21 21 H 0.97000 * 120.00603 * 174.84168 * 1 2 3 22 22 H 1.07999 * 125.69495 * 179.97438 * 11 10 9 23 23 H 1.09006 * 109.46836 * 204.97185 * 13 12 11 24 24 H 1.09000 * 109.46541 * 300.00042 * 14 13 12 25 25 H 1.09002 * 109.47209 * 59.99601 * 14 13 12 26 26 H 1.08997 * 109.46902 * 299.99522 * 15 14 13 27 27 H 1.09003 * 109.46732 * 179.97438 * 15 14 13 28 28 H 1.09003 * 109.46850 * 180.02562 * 16 15 14 29 29 H 1.08997 * 109.47531 * 60.00100 * 16 15 14 30 30 H 1.08997 * 109.47259 * 300.00605 * 17 16 15 31 31 H 1.09002 * 109.47094 * 180.02562 * 17 16 15 32 32 H 1.09003 * 109.47427 * 299.99776 * 18 13 12 33 33 H 1.08997 * 109.47133 * 59.99913 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 1.2760 2.7464 -0.0006 5 1 3.0946 1.6963 1.2125 6 1 3.0947 1.6962 -1.2125 7 6 2.0080 -1.2145 0.0005 8 1 1.4700 -2.1486 -0.0656 9 6 3.4052 -1.2161 0.0870 10 7 4.1765 -0.1516 0.2876 11 6 5.4483 -0.5315 0.3125 12 6 5.5034 -1.8793 0.1223 13 6 6.7491 -2.7262 0.0791 14 6 7.1519 -3.1139 1.5034 15 6 8.4163 -3.9743 1.4595 16 6 9.5503 -3.1813 0.8068 17 6 9.1475 -2.7937 -0.6175 18 6 7.8829 -1.9328 -0.5734 19 7 4.2197 -2.3197 -0.0159 20 1 3.9357 -3.2358 -0.1609 21 1 -0.4851 -0.8366 -0.0755 22 1 6.2977 0.1194 0.4583 23 1 6.5553 -3.6279 -0.5018 24 1 7.3455 -2.2121 2.0843 25 1 6.3441 -3.6791 1.9683 26 1 8.2222 -4.8759 0.8787 27 1 8.7034 -4.2500 2.4742 28 1 10.4509 -3.7945 0.7751 29 1 9.7444 -2.2796 1.3876 30 1 8.9534 -3.6954 -1.1983 31 1 9.9556 -2.2292 -1.0827 32 1 7.5960 -1.6567 -1.5881 33 1 8.0765 -1.0311 0.0075 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238553801.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:05 Heat of formation + Delta-G solvation = -14.630077 kcal Electronic energy + Delta-G solvation = -14841.068032 eV Core-core repulsion = 12478.517515 eV Total energy + Delta-G solvation = -2362.550517 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.24393 -39.14181 -35.59200 -33.27685 -32.59448 -31.56781 -30.09366 -26.21347 -23.68246 -23.28654 -22.11735 -21.52101 -20.58466 -19.38925 -18.00842 -16.25829 -15.74757 -15.49087 -15.28521 -15.05435 -14.84595 -14.78398 -14.31423 -13.75084 -13.30721 -13.16169 -13.01757 -12.67409 -12.43535 -11.97542 -11.88628 -11.64305 -11.32162 -11.18652 -11.09131 -10.97976 -10.52110 -9.83917 -9.35180 -9.16078 -6.56571 1.32287 1.63107 1.81222 2.08074 2.44162 2.51835 2.73232 3.29769 3.84254 3.90121 3.96704 4.31876 4.38823 4.43457 4.53047 4.56501 4.67693 4.70033 4.80421 4.90102 5.02773 5.19439 5.25425 5.31112 5.33256 5.38853 5.45039 5.50168 5.51555 5.61691 5.89893 6.02873 6.43655 6.73040 7.15582 7.74480 8.12285 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.059019 B = 0.007026 C = 0.006639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.305922 B = 3984.276474 C = 4216.491946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.032 3.968 3 Si 1.169 2.831 4 H -0.318 1.318 5 H -0.277 1.277 6 H -0.295 1.295 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.346 3.654 10 N -0.616 5.616 11 C -0.028 4.028 12 C -0.086 4.086 13 C 0.011 3.989 14 C -0.106 4.106 15 C -0.113 4.113 16 C -0.117 4.117 17 C -0.113 4.113 18 C -0.104 4.104 19 N -0.603 5.603 20 H 0.412 0.588 21 H 0.277 0.723 22 H 0.163 0.837 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.577 -7.451 0.353 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.184 4.184 3 Si 1.000 3.000 4 H -0.250 1.250 5 H -0.204 1.204 6 H -0.222 1.222 7 C -0.578 4.578 8 H 0.083 0.917 9 C 0.098 3.902 10 N -0.344 5.344 11 C -0.175 4.175 12 C -0.199 4.199 13 C -0.009 4.009 14 C -0.144 4.144 15 C -0.151 4.151 16 C -0.155 4.155 17 C -0.151 4.151 18 C -0.142 4.142 19 N -0.209 5.209 20 H 0.249 0.751 21 H 0.088 0.912 22 H 0.180 0.820 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.141 -5.087 0.535 17.888 hybrid contribution -0.481 -3.074 -0.234 3.120 sum 16.660 -8.161 0.302 18.554 Atomic orbital electron populations 1.70655 1.08011 1.32128 1.37005 1.27929 0.95480 1.06511 0.88438 0.81814 0.70260 0.68759 0.79164 1.24963 1.20440 1.22239 1.19366 0.88607 0.96256 1.53569 0.91726 1.20195 0.92280 0.81615 0.96087 1.69482 1.03622 1.28036 1.33278 1.22014 0.94041 0.93179 1.08287 1.21319 0.85805 0.95291 1.17462 1.19392 0.88671 0.95747 0.97072 1.21561 0.97663 0.99757 0.95388 1.21528 0.94156 0.98125 1.01270 1.21544 0.97935 1.00248 0.95738 1.21534 0.96475 0.99652 0.97402 1.21502 0.94117 0.98587 0.99976 1.43094 1.06237 1.09733 1.61863 0.75132 0.91243 0.82006 0.91377 0.92605 0.93754 0.91655 0.91178 0.90500 0.92052 0.91731 0.90751 0.92878 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.47 13.65 21.88 0.30 -49.17 16 2 C 0.03 1.84 5.52 85.35 0.47 2.31 16 3 Si 1.17 60.75 25.88 68.60 1.78 62.53 16 4 H -0.32 -15.87 7.11 99.48 0.71 -15.16 16 5 H -0.28 -14.62 6.75 99.48 0.67 -13.95 16 6 H -0.29 -15.43 7.11 99.48 0.71 -14.72 16 7 C -0.54 -30.82 9.89 23.18 0.23 -30.59 16 8 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16 9 C 0.35 18.48 7.36 133.59 0.98 19.47 16 10 N -0.62 -32.85 6.41 -194.17 -1.25 -34.10 16 11 C -0.03 -1.25 11.05 84.08 0.93 -0.32 16 12 C -0.09 -3.37 6.17 41.37 0.26 -3.11 16 13 C 0.01 0.31 2.65 -11.54 -0.03 0.28 16 14 C -0.11 -2.70 5.19 30.60 0.16 -2.54 16 15 C -0.11 -2.12 5.92 30.59 0.18 -1.94 16 16 C -0.12 -1.94 5.92 30.59 0.18 -1.76 16 17 C -0.11 -2.04 5.93 30.61 0.18 -1.86 16 18 C -0.10 -2.54 4.80 30.61 0.15 -2.40 16 19 N -0.60 -26.50 6.25 -179.88 -1.13 -27.62 16 20 H 0.41 15.65 8.96 -92.71 -0.83 14.82 16 21 H 0.28 15.55 8.72 -92.71 -0.81 14.74 16 22 H 0.16 6.25 7.39 -2.91 -0.02 6.23 16 23 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 24 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.59 7.30 -2.39 -0.02 1.57 16 Total: -1.00 -64.74 265.40 3.58 -61.16 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.19 Total: 9.65 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: 3.69 Total: -22.45 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -2.07 Total: -110.89 kcal Atomic # 14 Polarization: 60.75 SS G_CDS: 1.78 Total: 62.53 kcal Total: -64.74 3.58 -61.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238553801.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.531 kcal (2) G-P(sol) polarization free energy of solvation -64.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds