Wall clock time and date at job start Mon Mar 30 2020 03:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 N 1.30414 * 125.25275 * 90.02667 * 3 2 1 5 5 C 1.36260 * 109.19719 * 179.97438 * 4 3 2 6 6 C 1.41219 * 126.56816 * 180.02562 * 5 4 3 7 7 H 1.08006 * 120.00549 * 179.97438 * 6 5 4 8 8 C 1.39723 * 120.00169 * 359.97241 * 6 5 4 9 9 N 1.31019 * 119.99646 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00236 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47087 * 60.00020 * 10 8 6 12 12 H 1.48497 * 109.47317 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47182 * 300.00515 * 10 8 6 14 14 C 1.38248 * 106.86775 * 359.97438 * 5 4 3 15 15 N 1.35458 * 125.24828 * 269.72025 * 3 2 1 16 16 C 1.46568 * 128.13041 * 0.16845 * 15 3 2 17 17 C 1.53261 * 108.73807 * 162.59954 * 16 15 3 18 18 C 1.53125 * 109.70915 * 50.79242 * 17 16 15 19 19 C 1.50603 * 128.69412 * 180.14438 * 14 5 4 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 25 25 H 0.97000 * 119.99419 * 179.97438 * 9 8 6 26 26 H 1.09009 * 109.58904 * 282.37495 * 16 15 3 27 27 H 1.09001 * 109.59527 * 42.81986 * 16 15 3 28 28 H 1.08992 * 109.42927 * 170.86961 * 17 16 15 29 29 H 1.09001 * 109.42821 * 290.72293 * 17 16 15 30 30 H 1.09002 * 109.50926 * 50.25632 * 18 17 16 31 31 H 1.08999 * 109.51093 * 170.35255 * 18 17 16 32 32 H 1.09000 * 109.74625 * 283.97112 * 19 14 5 33 33 H 1.09003 * 109.74518 * 44.68908 * 19 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2836 2.1304 1.0650 5 6 2.7205 3.3648 0.6881 6 6 3.0955 4.4225 1.5454 7 1 3.4284 5.3623 1.1300 8 6 3.0360 4.2534 2.9311 9 7 2.6326 3.1132 3.4350 10 14 3.5327 5.6521 4.0650 11 1 2.6636 6.8289 3.8096 12 1 3.3799 5.2220 5.4781 13 1 4.9490 6.0179 3.8088 14 6 2.7273 3.3832 -0.6942 15 7 2.2979 2.1561 -1.1062 16 6 2.1615 1.7597 -2.5106 17 6 2.1533 3.0219 -3.3799 18 6 3.3502 3.9058 -3.0183 19 6 3.1267 4.5028 -1.6190 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 2.5916 2.9957 4.3970 26 1 3.0015 1.1256 -2.7947 27 1 1.2271 1.2154 -2.6477 28 1 2.2158 2.7389 -4.4306 29 1 1.2295 3.5744 -3.2082 30 1 4.2604 3.3061 -3.0238 31 1 3.4409 4.7117 -3.7466 32 1 2.3377 5.2542 -1.6498 33 1 4.0543 4.9560 -1.2693 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258551623.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:22 Heat of formation + Delta-G solvation = 33.579787 kcal Electronic energy + Delta-G solvation = -15206.709575 eV Core-core repulsion = 12846.249594 eV Total energy + Delta-G solvation = -2360.459980 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.35665 -35.69063 -33.66695 -32.37509 -31.15677 -28.93972 -27.46906 -24.64506 -23.43649 -22.36171 -20.51198 -19.21878 -17.64135 -16.78974 -15.01375 -14.84211 -14.45382 -13.83070 -13.54116 -13.26391 -13.19809 -12.91436 -12.51046 -12.22909 -11.80829 -11.12992 -11.07490 -10.98908 -10.75539 -10.62030 -10.50384 -10.33017 -10.17890 -9.98493 -9.75178 -9.02821 -7.88242 -7.74422 -6.67932 -6.10588 -3.86662 3.20945 3.30048 3.32926 3.58445 4.13558 4.31332 4.69426 5.09348 5.16579 5.30693 5.47389 5.63347 5.72527 5.77748 5.84072 5.95021 6.03597 6.08291 6.13399 6.23403 6.27658 6.37097 6.45818 6.66283 6.73340 6.78290 6.85925 7.37644 7.63575 7.92774 8.15282 8.56641 8.90001 9.24475 9.44509 10.15731 10.83600 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.027179 B = 0.010821 C = 0.008008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.971624 B = 2586.990539 C = 3495.650932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.026 4.026 3 C 0.165 3.835 4 N -0.453 5.453 5 C 0.205 3.795 6 C -0.452 4.452 7 H 0.073 0.927 8 C 0.076 3.924 9 N -0.774 5.774 10 Si 0.898 3.102 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.271 1.271 14 C -0.197 4.197 15 N -0.463 5.463 16 C 0.118 3.882 17 C -0.125 4.125 18 C -0.119 4.119 19 C -0.005 4.005 20 H 0.050 0.950 21 H 0.062 0.938 22 H 0.044 0.956 23 H 0.082 0.918 24 H 0.056 0.944 25 H 0.265 0.735 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.516 -2.668 -9.746 10.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.065 4.065 3 C -0.095 4.095 4 N -0.176 5.176 5 C 0.081 3.919 6 C -0.487 4.487 7 H 0.091 0.909 8 C -0.142 4.142 9 N -0.400 5.400 10 Si 0.724 3.276 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.196 1.196 14 C -0.304 4.304 15 N -0.156 5.156 16 C -0.007 4.007 17 C -0.163 4.163 18 C -0.156 4.156 19 C -0.044 4.044 20 H 0.069 0.931 21 H 0.081 0.919 22 H 0.063 0.937 23 H 0.100 0.900 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.660 -3.099 -8.852 9.524 hybrid contribution 0.314 0.869 -0.330 0.981 sum -1.346 -2.231 -9.182 9.544 Atomic orbital electron populations 1.21689 0.95471 1.00492 1.02183 1.19662 0.95238 0.89718 1.01901 1.23123 1.07904 0.96105 0.82354 1.71373 1.18346 1.04257 1.23657 1.17999 0.95378 0.90957 0.87521 1.18381 1.42463 0.98052 0.89811 0.90928 1.25752 0.94030 0.95672 0.98761 1.70099 1.34907 1.22812 1.12208 0.86581 0.79619 0.82255 0.79190 1.19578 1.20851 1.19575 1.20679 1.26159 0.88782 0.94782 1.44516 1.54281 1.12594 1.04200 1.21474 1.00669 0.96971 0.81555 1.21749 1.00070 0.96277 0.98206 1.21660 0.97400 0.98603 0.97981 1.19575 0.99813 0.94234 0.90738 0.93086 0.91875 0.93654 0.89962 0.92516 0.92476 0.92289 0.91475 0.91466 0.91480 0.92317 0.92403 0.93135 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.89 37.16 0.37 -1.92 16 2 C -0.03 -0.48 6.28 -27.88 -0.18 -0.66 16 3 C 0.17 3.97 7.16 -155.11 -1.11 2.86 16 4 N -0.45 -13.11 9.54 -8.38 -0.08 -13.19 16 5 C 0.20 5.97 6.68 -84.76 -0.57 5.41 16 6 C -0.45 -13.20 9.23 -37.90 -0.35 -13.55 16 7 H 0.07 2.01 7.84 -52.48 -0.41 1.59 16 8 C 0.08 2.14 5.49 -17.34 -0.10 2.04 16 9 N -0.77 -22.87 11.95 55.54 0.66 -22.21 16 10 Si 0.90 20.72 29.56 -169.99 -5.02 15.70 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 14 C -0.20 -4.91 6.68 -80.62 -0.54 -5.45 16 15 N -0.46 -10.37 3.14 -108.24 -0.34 -10.71 16 16 C 0.12 1.96 6.55 -3.87 -0.03 1.93 16 17 C -0.13 -1.85 5.91 -26.53 -0.16 -2.01 16 18 C -0.12 -1.90 5.99 -26.27 -0.16 -2.06 16 19 C -0.01 -0.11 6.15 -27.53 -0.17 -0.28 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 24 H 0.06 0.89 7.91 -51.93 -0.41 0.48 16 25 H 0.26 7.23 8.30 -40.82 -0.34 6.89 16 26 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 30 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 273.23 15.07 4.12 4.12 Total: -1.00 -33.04 273.23 -8.67 -41.70 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -5.03 Total: -1.73 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -2.98 Total: -13.68 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.24 Total: -46.10 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.04 -8.67 -41.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258551623.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.283 kcal (2) G-P(sol) polarization free energy of solvation -33.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds