Wall clock time and date at job start Mon Mar 30 2020 03:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 N 1.30414 * 125.25275 * 90.02667 * 3 2 1 5 5 C 1.36260 * 109.19719 * 179.97438 * 4 3 2 6 6 C 1.41219 * 126.56816 * 180.02562 * 5 4 3 7 7 H 1.08006 * 120.00549 * 179.97438 * 6 5 4 8 8 C 1.39723 * 120.00169 * 359.97241 * 6 5 4 9 9 N 1.31019 * 119.99646 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00236 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47087 * 60.00020 * 10 8 6 12 12 H 1.48497 * 109.47317 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47182 * 300.00515 * 10 8 6 14 14 C 1.38248 * 106.86775 * 359.97438 * 5 4 3 15 15 N 1.35458 * 125.24828 * 269.72025 * 3 2 1 16 16 C 1.46568 * 128.13041 * 0.16845 * 15 3 2 17 17 C 1.53261 * 108.73807 * 162.59954 * 16 15 3 18 18 C 1.53125 * 109.70915 * 50.79242 * 17 16 15 19 19 C 1.50603 * 128.69412 * 180.14438 * 14 5 4 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 25 25 H 0.97000 * 119.99419 * 179.97438 * 9 8 6 26 26 H 1.09009 * 109.58904 * 282.37495 * 16 15 3 27 27 H 1.09001 * 109.59527 * 42.81986 * 16 15 3 28 28 H 1.08992 * 109.42927 * 170.86961 * 17 16 15 29 29 H 1.09001 * 109.42821 * 290.72293 * 17 16 15 30 30 H 1.09002 * 109.50926 * 50.25632 * 18 17 16 31 31 H 1.08999 * 109.51093 * 170.35255 * 18 17 16 32 32 H 1.09000 * 109.74625 * 283.97112 * 19 14 5 33 33 H 1.09003 * 109.74518 * 44.68908 * 19 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2836 2.1304 1.0650 5 6 2.7205 3.3648 0.6881 6 6 3.0955 4.4225 1.5454 7 1 3.4284 5.3623 1.1300 8 6 3.0360 4.2534 2.9311 9 7 2.6326 3.1132 3.4350 10 14 3.5327 5.6521 4.0650 11 1 2.6636 6.8289 3.8096 12 1 3.3799 5.2220 5.4781 13 1 4.9490 6.0179 3.8088 14 6 2.7273 3.3832 -0.6942 15 7 2.2979 2.1561 -1.1062 16 6 2.1615 1.7597 -2.5106 17 6 2.1533 3.0219 -3.3799 18 6 3.3502 3.9058 -3.0183 19 6 3.1267 4.5028 -1.6190 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 2.5916 2.9957 4.3970 26 1 3.0015 1.1256 -2.7947 27 1 1.2271 1.2154 -2.6477 28 1 2.2158 2.7389 -4.4306 29 1 1.2295 3.5744 -3.2082 30 1 4.2604 3.3061 -3.0238 31 1 3.4409 4.7117 -3.7466 32 1 2.3377 5.2542 -1.6498 33 1 4.0543 4.9560 -1.2693 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258551623.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:21 Heat of formation + Delta-G solvation = 13.193370 kcal Electronic energy + Delta-G solvation = -15207.593596 eV Core-core repulsion = 12846.249594 eV Total energy + Delta-G solvation = -2361.344002 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.16493 -37.18568 -35.50538 -34.11416 -32.78190 -30.59766 -29.35158 -26.41453 -24.92167 -23.92058 -22.16177 -20.98139 -19.26561 -18.74982 -16.82381 -16.51664 -16.15235 -15.33355 -15.00043 -14.75936 -14.61421 -14.40180 -14.35979 -13.84171 -13.25501 -12.91648 -12.81491 -12.60472 -12.34945 -12.16992 -12.01065 -11.84882 -11.77583 -11.52111 -11.48513 -11.01511 -9.84647 -9.64549 -8.66446 -8.16286 -5.98252 1.37018 1.39759 1.52197 1.75622 2.34771 2.54975 2.69088 3.75706 3.83349 3.91775 3.93358 4.06077 4.26343 4.43475 4.49021 4.51109 4.61374 4.71742 4.82432 4.93523 4.99461 5.01781 5.08999 5.12229 5.21479 5.36192 5.39772 5.42537 5.65664 6.01103 6.20520 6.48836 7.02908 7.22985 7.40575 8.22033 8.79927 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.027179 B = 0.010821 C = 0.008008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.971624 B = 2586.990539 C = 3495.650932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.023 4.023 3 C 0.154 3.846 4 N -0.511 5.511 5 C 0.142 3.858 6 C -0.489 4.489 7 H 0.071 0.929 8 C 0.022 3.978 9 N -0.820 5.820 10 Si 0.977 3.023 11 H -0.263 1.263 12 H -0.276 1.276 13 H -0.263 1.263 14 C -0.188 4.188 15 N -0.460 5.460 16 C 0.103 3.897 17 C -0.121 4.121 18 C -0.111 4.111 19 C -0.011 4.011 20 H 0.090 0.910 21 H 0.029 0.971 22 H 0.052 0.948 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.265 0.735 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.114 0.886 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.681 -3.043 -12.449 12.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.063 4.063 3 C -0.107 4.107 4 N -0.235 5.235 5 C 0.018 3.982 6 C -0.525 4.525 7 H 0.089 0.911 8 C -0.191 4.191 9 N -0.448 5.448 10 Si 0.799 3.201 11 H -0.188 1.188 12 H -0.200 1.200 13 H -0.187 1.187 14 C -0.298 4.298 15 N -0.150 5.150 16 C -0.018 4.018 17 C -0.158 4.158 18 C -0.149 4.149 19 C -0.049 4.049 20 H 0.109 0.891 21 H 0.048 0.952 22 H 0.071 0.929 23 H 0.090 0.910 24 H 0.112 0.888 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.132 0.868 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.830 -3.490 -11.612 12.262 hybrid contribution 0.344 0.908 0.320 1.023 sum -1.486 -2.582 -11.292 11.678 Atomic orbital electron populations 1.21608 0.93653 1.02673 1.00884 1.19846 0.96660 0.86591 1.03155 1.23999 1.06767 0.97823 0.82116 1.71220 1.20356 1.05083 1.26824 1.18551 0.98031 0.91795 0.89838 1.18710 1.44083 0.98522 0.91136 0.91053 1.26668 0.93784 0.98544 1.00132 1.70262 1.36996 1.25206 1.12356 0.85367 0.79421 0.78519 0.76799 1.18763 1.20044 1.18739 1.21283 1.23457 0.90635 0.94392 1.44842 1.52366 1.11330 1.06497 1.22006 1.02883 0.98731 0.78214 1.21792 0.98833 0.94833 1.00347 1.21629 0.98039 0.99795 0.95413 1.19711 0.99193 0.93057 0.92975 0.89101 0.95202 0.92874 0.91028 0.88806 0.92508 0.90196 0.88906 0.86756 0.92309 0.92399 0.89031 0.93005 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 9.89 71.98 0.71 -3.31 16 2 C -0.02 -0.84 6.28 29.85 0.19 -0.65 16 3 C 0.15 7.46 7.16 138.02 0.99 8.45 16 4 N -0.51 -30.92 9.54 -180.43 -1.72 -32.64 16 5 C 0.14 8.65 6.68 39.19 0.26 8.91 16 6 C -0.49 -30.10 9.23 23.36 0.22 -29.88 16 7 H 0.07 4.16 7.84 -2.91 -0.02 4.14 16 8 C 0.02 1.28 5.49 85.17 0.47 1.74 16 9 N -0.82 -51.16 11.95 21.79 0.26 -50.90 16 10 Si 0.98 44.38 29.56 68.60 2.03 46.41 16 11 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 12 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 13 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 14 C -0.19 -9.50 6.68 41.82 0.28 -9.22 16 15 N -0.46 -20.10 3.14 -496.38 -1.56 -21.65 16 16 C 0.10 3.03 6.55 86.45 0.57 3.60 16 17 C -0.12 -3.01 5.91 30.72 0.18 -2.83 16 18 C -0.11 -3.18 5.99 30.89 0.18 -2.99 16 19 C -0.01 -0.44 6.15 30.08 0.18 -0.25 16 20 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 21 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 24 H 0.09 2.64 7.91 -2.39 -0.02 2.62 16 25 H 0.27 15.29 8.30 -92.71 -0.77 14.52 16 26 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.06 1.59 8.11 -2.39 -0.02 1.58 16 30 H 0.06 1.68 8.12 -2.39 -0.02 1.66 16 31 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -78.08 273.23 4.32 -73.76 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 1.08 Total: 11.44 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 4.23 Total: -26.42 kcal Atomic # 7 Polarization: -102.18 SS G_CDS: -3.02 Total: -105.20 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -78.08 4.32 -73.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258551623.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.952 kcal (2) G-P(sol) polarization free energy of solvation -78.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds