Wall clock time and date at job start Mon Mar 30 2020 02:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33049 * 125.78927 * 2 1 4 4 C 1.33264 * 109.29094 * 179.97438 * 3 2 1 5 5 C 1.39990 * 126.04507 * 179.97438 * 4 3 2 6 6 H 1.07997 * 120.00401 * 198.71640 * 5 4 3 7 7 C 1.40242 * 120.00336 * 18.71716 * 5 4 3 8 8 N 1.30695 * 119.99363 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00239 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47147 * 60.00302 * 9 7 5 11 11 H 1.48499 * 109.47119 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47310 * 300.00042 * 9 7 5 13 13 N 1.36874 * 107.90672 * 359.94415 * 4 3 2 14 14 C 1.35512 * 125.79076 * 179.97438 * 2 1 3 15 15 C 1.50770 * 128.46473 * 0.18795 * 14 2 1 16 16 C 1.53479 * 108.05796 * 164.14617 * 15 14 2 17 17 C 1.53126 * 109.31793 * 48.75213 * 16 15 14 18 18 C 1.46405 * 128.48168 * 180.15390 * 13 4 3 19 19 H 1.09002 * 109.73090 * 282.62093 * 18 13 4 20 20 C 1.53000 * 109.59772 * 43.01373 * 18 13 4 21 21 H 1.08999 * 109.46978 * 90.02888 * 1 2 3 22 22 H 1.09005 * 109.46808 * 210.02463 * 1 2 3 23 23 H 1.08998 * 109.47558 * 330.02148 * 1 2 3 24 24 H 0.97003 * 119.99169 * 180.02562 * 8 7 5 25 25 H 1.09008 * 109.73718 * 283.78829 * 15 14 2 26 26 H 1.09001 * 109.73767 * 44.44324 * 15 14 2 27 27 H 1.09001 * 109.51884 * 288.78553 * 16 15 14 28 28 H 1.09000 * 109.47553 * 168.69490 * 16 15 14 29 29 H 1.09002 * 109.43709 * 170.14875 * 17 16 15 30 30 H 1.08993 * 109.43561 * 50.22413 * 17 16 15 31 31 H 1.08998 * 109.47077 * 171.54109 * 20 18 13 32 32 H 1.09004 * 109.47172 * 291.54092 * 20 18 13 33 33 H 1.09001 * 109.47374 * 51.53804 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2850 1.0793 0.0000 4 6 3.5628 0.7008 0.0006 5 6 4.6741 1.5522 0.0002 6 1 5.6415 1.1773 -0.2994 7 6 4.5311 2.8920 0.3890 8 7 3.3604 3.3456 0.7521 9 14 6.0138 4.0282 0.3879 10 1 6.5730 4.1109 -0.9853 11 1 5.6001 5.3823 0.8356 12 1 7.0468 3.4949 1.3118 13 7 3.5965 -0.6675 0.0022 14 6 2.2995 -1.0992 0.0005 15 6 1.8904 -2.5503 -0.0027 16 6 3.1133 -3.3885 -0.3993 17 6 4.3193 -2.9524 0.4374 18 6 4.7646 -1.5501 0.0064 19 1 5.1961 -1.5942 -0.9936 20 6 5.8066 -1.0175 0.9920 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3634 0.8901 0.5135 24 1 3.2615 4.2725 1.0206 25 1 1.5525 -2.8398 0.9924 26 1 1.0874 -2.7048 -0.7235 27 1 3.3307 -3.2380 -1.4568 28 1 2.9060 -4.4429 -0.2167 29 1 5.1386 -3.6554 0.2868 30 1 4.0430 -2.9377 1.4916 31 1 6.6060 -1.7496 1.1065 32 1 6.2211 -0.0832 0.6130 33 1 5.3352 -0.8400 1.9586 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260146166.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:04 Heat of formation + Delta-G solvation = 36.159832 kcal Electronic energy + Delta-G solvation = -15435.029143 eV Core-core repulsion = 13074.681042 eV Total energy + Delta-G solvation = -2360.348101 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.37929 -35.97751 -33.66154 -32.53248 -30.05260 -28.93563 -27.17566 -26.20128 -23.43841 -21.82856 -20.75265 -18.94203 -17.72989 -16.86780 -15.39951 -14.50169 -14.19756 -13.92289 -13.45319 -13.22230 -12.92098 -12.51341 -12.03304 -12.02372 -11.64624 -11.36626 -11.28647 -11.16741 -11.03861 -10.74000 -10.51057 -10.46468 -10.26690 -10.02368 -9.66519 -9.02807 -7.70500 -7.67479 -6.72227 -6.33803 -4.17581 3.10140 3.19013 3.19943 3.66406 4.06925 4.39006 4.70812 5.09867 5.21503 5.31977 5.64006 5.74447 5.80950 5.91291 6.04514 6.08941 6.19346 6.22018 6.25909 6.39010 6.45708 6.54529 6.55215 6.63614 6.71289 6.82817 6.86145 7.34920 7.48771 7.74342 8.28337 8.34027 8.66076 9.06198 9.44074 10.32042 10.62822 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.030575 B = 0.011489 C = 0.008619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.575206 B = 2436.546061 C = 3247.962226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.012 3.988 3 N -0.515 5.515 4 C 0.388 3.612 5 C -0.469 4.469 6 H 0.080 0.920 7 C 0.086 3.914 8 N -0.755 5.755 9 Si 0.906 3.094 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.269 1.269 13 N -0.494 5.494 14 C -0.139 4.139 15 C -0.021 4.021 16 C -0.118 4.118 17 C -0.122 4.122 18 C 0.153 3.847 19 H 0.062 0.938 20 C -0.162 4.162 21 H 0.048 0.952 22 H 0.046 0.954 23 H 0.057 0.943 24 H 0.271 0.729 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.017 -8.747 -0.140 8.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.122 4.122 3 N -0.236 5.236 4 C 0.144 3.856 5 C -0.508 4.508 6 H 0.098 0.902 7 C -0.137 4.137 8 N -0.380 5.380 9 Si 0.731 3.269 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.193 1.193 13 N -0.184 5.184 14 C -0.251 4.251 15 C -0.059 4.059 16 C -0.156 4.156 17 C -0.160 4.160 18 C 0.048 3.952 19 H 0.080 0.920 20 C -0.219 4.219 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.682 -7.858 -0.061 8.036 hybrid contribution 1.039 -0.310 0.020 1.085 sum 2.722 -8.167 -0.042 8.609 Atomic orbital electron populations 1.19814 0.90837 1.00485 1.00022 1.20229 0.94830 0.89948 1.07148 1.71315 0.98983 1.25398 1.27908 1.19943 0.93068 0.77473 0.95163 1.18068 0.93090 0.93656 1.45966 0.90210 1.25658 0.96320 0.98106 0.93597 1.69954 1.22814 1.15277 1.29984 0.86442 0.81910 0.79271 0.79309 1.19267 1.20474 1.19344 1.45430 1.03886 1.06804 1.62274 1.20120 0.85061 0.94356 1.25534 1.19768 0.96172 0.90105 0.99854 1.21581 0.95614 0.98608 0.99770 1.21865 0.98012 0.95524 1.00633 1.20903 0.86561 0.88988 0.98753 0.92010 1.22220 0.97682 1.02268 0.99768 0.93364 0.93455 0.92442 0.91807 0.92832 0.92142 0.92244 0.92324 0.91448 0.91540 0.92970 0.89725 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.11 10.27 36.00 0.37 -0.74 16 2 C 0.01 0.30 7.07 -83.04 -0.59 -0.28 16 3 N -0.51 -15.27 9.68 -9.15 -0.09 -15.36 16 4 C 0.39 10.97 7.13 -155.99 -1.11 9.86 16 5 C -0.47 -12.81 7.94 -38.17 -0.30 -13.12 16 6 H 0.08 2.02 5.80 -52.49 -0.30 1.71 16 7 C 0.09 2.29 5.50 -17.28 -0.10 2.20 16 8 N -0.75 -21.56 12.06 55.56 0.67 -20.89 16 9 Si 0.91 19.52 29.56 -169.99 -5.03 14.50 16 10 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 11 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 12 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 13 N -0.49 -12.03 3.03 -104.47 -0.32 -12.35 16 14 C -0.14 -3.28 6.60 -81.36 -0.54 -3.82 16 15 C -0.02 -0.37 6.00 -27.60 -0.17 -0.54 16 16 C -0.12 -1.83 5.95 -26.42 -0.16 -1.99 16 17 C -0.12 -1.95 5.23 -26.50 -0.14 -2.09 16 18 C 0.15 2.97 3.56 -67.82 -0.24 2.73 16 19 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 20 C -0.16 -2.96 8.63 37.16 0.32 -2.64 16 21 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.05 0.84 8.01 -51.93 -0.42 0.43 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 25 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.68 5.19 -51.93 -0.27 1.41 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 266.32 15.07 4.01 4.01 Total: -1.00 -31.88 266.32 -8.16 -40.04 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.77 Total: 0.47 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -2.65 Total: -10.43 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.27 Total: -48.59 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.88 -8.16 -40.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260146166.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.201 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds