Wall clock time and date at job start Mon Mar 30 2020 02:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33049 * 125.78927 * 2 1 4 4 C 1.33264 * 109.29094 * 179.97438 * 3 2 1 5 5 C 1.39990 * 126.04507 * 179.97438 * 4 3 2 6 6 H 1.07997 * 120.00401 * 198.71640 * 5 4 3 7 7 C 1.40242 * 120.00336 * 18.71716 * 5 4 3 8 8 N 1.30695 * 119.99363 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00239 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47147 * 60.00302 * 9 7 5 11 11 H 1.48499 * 109.47119 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47310 * 300.00042 * 9 7 5 13 13 N 1.36874 * 107.90672 * 359.94415 * 4 3 2 14 14 C 1.35512 * 125.79076 * 179.97438 * 2 1 3 15 15 C 1.50770 * 128.46473 * 0.18795 * 14 2 1 16 16 C 1.53479 * 108.05796 * 164.14617 * 15 14 2 17 17 C 1.53126 * 109.31793 * 48.75213 * 16 15 14 18 18 C 1.46405 * 128.48168 * 180.15390 * 13 4 3 19 19 H 1.09002 * 109.73090 * 282.62093 * 18 13 4 20 20 C 1.53000 * 109.59772 * 43.01373 * 18 13 4 21 21 H 1.08999 * 109.46978 * 90.02888 * 1 2 3 22 22 H 1.09005 * 109.46808 * 210.02463 * 1 2 3 23 23 H 1.08998 * 109.47558 * 330.02148 * 1 2 3 24 24 H 0.97003 * 119.99169 * 180.02562 * 8 7 5 25 25 H 1.09008 * 109.73718 * 283.78829 * 15 14 2 26 26 H 1.09001 * 109.73767 * 44.44324 * 15 14 2 27 27 H 1.09001 * 109.51884 * 288.78553 * 16 15 14 28 28 H 1.09000 * 109.47553 * 168.69490 * 16 15 14 29 29 H 1.09002 * 109.43709 * 170.14875 * 17 16 15 30 30 H 1.08993 * 109.43561 * 50.22413 * 17 16 15 31 31 H 1.08998 * 109.47077 * 171.54109 * 20 18 13 32 32 H 1.09004 * 109.47172 * 291.54092 * 20 18 13 33 33 H 1.09001 * 109.47374 * 51.53804 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2850 1.0793 0.0000 4 6 3.5628 0.7008 0.0006 5 6 4.6741 1.5522 0.0002 6 1 5.6415 1.1773 -0.2994 7 6 4.5311 2.8920 0.3890 8 7 3.3604 3.3456 0.7521 9 14 6.0138 4.0282 0.3879 10 1 6.5730 4.1109 -0.9853 11 1 5.6001 5.3823 0.8356 12 1 7.0468 3.4949 1.3118 13 7 3.5965 -0.6675 0.0022 14 6 2.2995 -1.0992 0.0005 15 6 1.8904 -2.5503 -0.0027 16 6 3.1133 -3.3885 -0.3993 17 6 4.3193 -2.9524 0.4374 18 6 4.7646 -1.5501 0.0064 19 1 5.1961 -1.5942 -0.9936 20 6 5.8066 -1.0175 0.9920 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3634 0.8901 0.5135 24 1 3.2615 4.2725 1.0206 25 1 1.5525 -2.8398 0.9924 26 1 1.0874 -2.7048 -0.7235 27 1 3.3307 -3.2380 -1.4568 28 1 2.9060 -4.4429 -0.2167 29 1 5.1386 -3.6554 0.2868 30 1 4.0430 -2.9377 1.4916 31 1 6.6060 -1.7496 1.1065 32 1 6.2211 -0.0832 0.6130 33 1 5.3352 -0.8400 1.9586 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260146166.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:03 Heat of formation + Delta-G solvation = 16.749600 kcal Electronic energy + Delta-G solvation = -15435.870834 eV Core-core repulsion = 13074.681042 eV Total energy + Delta-G solvation = -2361.189792 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.20725 -37.52614 -35.51566 -34.23345 -31.71655 -30.73071 -29.03385 -27.76407 -25.15124 -23.39915 -22.39470 -20.76596 -19.40734 -18.74787 -17.23796 -16.24354 -15.86576 -15.34393 -15.04638 -14.77162 -14.51954 -14.10914 -13.67370 -13.52995 -13.34566 -13.08006 -12.96971 -12.86311 -12.62577 -12.37712 -12.07164 -11.85028 -11.78896 -11.64641 -11.23696 -10.95419 -9.68842 -9.61239 -8.66707 -8.30821 -6.20541 1.37697 1.41242 1.53751 1.82779 2.27014 2.66468 2.75638 3.58981 3.80291 3.89134 4.01002 4.31555 4.33648 4.45031 4.50197 4.71834 4.73319 4.81344 4.89590 4.95806 5.01629 5.05998 5.08791 5.14736 5.15421 5.24441 5.39962 5.50070 5.61864 5.85894 6.37758 6.37903 6.78939 7.07857 7.50183 8.36151 8.68665 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.030575 B = 0.011489 C = 0.008619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.575206 B = 2436.546061 C = 3247.962226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.045 4.045 3 N -0.565 5.565 4 C 0.346 3.654 5 C -0.492 4.492 6 H 0.090 0.910 7 C 0.033 3.967 8 N -0.807 5.807 9 Si 0.986 3.014 10 H -0.261 1.261 11 H -0.276 1.276 12 H -0.255 1.255 13 N -0.496 5.496 14 C -0.124 4.124 15 C -0.023 4.023 16 C -0.114 4.114 17 C -0.116 4.116 18 C 0.136 3.864 19 H 0.066 0.934 20 C -0.153 4.153 21 H 0.059 0.941 22 H 0.077 0.923 23 H 0.041 0.959 24 H 0.272 0.728 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.276 -11.304 -0.249 11.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.176 4.176 3 N -0.288 5.288 4 C 0.100 3.900 5 C -0.531 4.531 6 H 0.108 0.892 7 C -0.184 4.184 8 N -0.435 5.435 9 Si 0.807 3.193 10 H -0.185 1.185 11 H -0.201 1.201 12 H -0.179 1.179 13 N -0.185 5.185 14 C -0.237 4.237 15 C -0.062 4.062 16 C -0.151 4.151 17 C -0.153 4.153 18 C 0.033 3.967 19 H 0.084 0.916 20 C -0.210 4.210 21 H 0.078 0.922 22 H 0.096 0.904 23 H 0.061 0.939 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.948 -10.461 -0.175 10.869 hybrid contribution 0.595 0.335 0.035 0.684 sum 3.543 -10.125 -0.139 10.728 Atomic orbital electron populations 1.19814 0.88176 1.01208 1.00967 1.21058 0.97050 0.90087 1.09404 1.71174 1.00470 1.28150 1.28963 1.20271 0.93182 0.79504 0.97060 1.18469 0.93481 0.94507 1.46647 0.89170 1.26716 0.99522 0.99611 0.92573 1.70120 1.25605 1.15732 1.32004 0.85220 0.77709 0.76663 0.79710 1.18492 1.20079 1.17910 1.45751 1.05708 1.06340 1.60663 1.21062 0.84520 0.96780 1.21289 1.19992 0.98113 0.86672 1.01379 1.21597 0.93887 1.00351 0.99286 1.21887 0.99714 0.93600 1.00142 1.21385 0.85423 0.90433 0.99488 0.91554 1.22127 0.98373 1.02594 0.97941 0.92224 0.90400 0.93946 0.91759 0.91343 0.90405 0.92669 0.88184 0.87357 0.92129 0.88531 0.91885 0.94635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.83 10.27 71.23 0.73 -1.10 16 2 C -0.04 -2.34 7.07 41.74 0.30 -2.05 16 3 N -0.56 -35.05 9.68 -182.86 -1.77 -36.82 16 4 C 0.35 20.32 7.13 133.72 0.95 21.28 16 5 C -0.49 -27.84 7.94 23.18 0.18 -27.65 16 6 H 0.09 4.68 5.80 -2.91 -0.02 4.66 16 7 C 0.03 1.83 5.50 85.35 0.47 2.30 16 8 N -0.81 -48.43 12.06 21.88 0.26 -48.17 16 9 Si 0.99 41.06 29.56 68.60 2.03 43.08 16 10 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 11 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 12 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 13 N -0.50 -24.22 3.03 -484.42 -1.47 -25.69 16 14 C -0.12 -5.76 6.60 41.19 0.27 -5.49 16 15 C -0.02 -0.77 6.00 30.03 0.18 -0.59 16 16 C -0.11 -3.02 5.95 30.80 0.18 -2.84 16 17 C -0.12 -3.22 5.23 30.74 0.16 -3.06 16 18 C 0.14 5.05 3.56 45.11 0.16 5.21 16 19 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 20 C -0.15 -5.40 8.63 71.98 0.62 -4.78 16 21 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 22 H 0.08 2.68 8.01 -2.38 -0.02 2.66 16 23 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.27 15.02 8.29 -92.71 -0.77 14.25 16 25 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 26 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.05 1.53 8.12 -2.39 -0.02 1.52 16 28 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.06 1.78 8.09 -2.39 -0.02 1.76 16 31 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.06 2.49 5.19 -2.39 -0.01 2.47 16 33 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -74.03 266.32 4.36 -69.67 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 1.09 Total: 16.68 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 4.21 Total: -18.76 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -2.97 Total: -110.68 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -74.03 4.36 -69.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260146166.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.424 kcal (2) G-P(sol) polarization free energy of solvation -74.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds