Wall clock time and date at job start Mon Mar 30 2020 04:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47319 * 2 1 4 4 C 1.50700 * 109.47036 * 119.99806 * 2 1 3 5 5 C 1.38886 * 120.74861 * 300.28634 * 4 2 1 6 6 C 1.38026 * 119.33120 * 180.29789 * 5 4 2 7 7 N 1.31974 * 120.85540 * 359.68539 * 6 5 4 8 8 C 1.32400 * 121.61845 * 0.02562 * 7 6 5 9 9 N 1.39009 * 119.69949 * 180.02562 * 8 7 6 10 10 C 1.46501 * 119.99795 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47147 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99788 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00005 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00169 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00113 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47029 * 89.99907 * 15 13 11 17 17 H 1.48505 * 109.47190 * 210.00414 * 15 13 11 18 18 H 1.48501 * 109.47047 * 329.99999 * 15 13 11 19 19 C 1.38297 * 120.74853 * 119.99615 * 4 2 1 20 20 H 1.09004 * 109.47120 * 300.00325 * 1 2 3 21 21 H 1.08994 * 109.47349 * 60.00212 * 1 2 3 22 22 H 1.09008 * 109.47266 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47168 * 239.99591 * 2 1 3 24 24 H 1.09004 * 109.47291 * 59.99779 * 3 2 1 25 25 H 1.09003 * 109.47150 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47322 * 300.00118 * 3 2 1 27 27 H 1.08003 * 120.33334 * 0.02562 * 5 4 2 28 28 H 1.08004 * 119.57370 * 179.69860 * 6 5 4 29 29 H 0.96994 * 119.99820 * 359.97438 * 9 8 7 30 30 H 1.09001 * 109.46940 * 299.99956 * 10 9 8 31 31 H 1.09003 * 109.46805 * 59.99711 * 10 9 8 32 32 H 0.96998 * 119.99963 * 179.97438 * 14 13 11 33 33 H 1.08002 * 120.45299 * 0.02562 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7014 -0.2528 2.4994 6 6 2.1827 -0.9222 3.6063 7 7 2.9452 -1.9911 3.4724 8 6 3.2778 -2.4615 2.2804 9 7 4.0829 -3.5907 2.1857 10 6 4.4545 -4.1172 0.8700 11 6 5.3245 -5.3353 1.0438 12 1 5.5758 -5.6824 2.0352 13 6 5.7996 -6.0067 -0.0627 14 7 5.4940 -5.5837 -1.2700 15 14 6.8786 -7.5162 0.1526 16 1 6.0252 -8.7299 0.2143 17 1 7.8124 -7.6254 -0.9969 18 1 7.6561 -7.3934 1.4119 19 6 2.8282 -1.8361 1.1217 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.0775 0.6207 2.6187 28 1 1.9319 -0.5669 4.5949 29 1 4.3985 -4.0301 2.9908 30 1 3.5537 -4.3890 0.3198 31 1 5.0029 -3.3555 0.3157 32 1 5.8285 -6.0558 -2.0484 33 1 3.1012 -2.2216 0.1504 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260255853.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:54 Heat of formation + Delta-G solvation = 13.980506 kcal Electronic energy + Delta-G solvation = -14339.097190 eV Core-core repulsion = 11977.787321 eV Total energy + Delta-G solvation = -2361.309869 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.75633 -36.16127 -34.81796 -32.59433 -30.51886 -29.35077 -27.07854 -26.62341 -23.50147 -23.17958 -21.47579 -19.71999 -17.30052 -16.05222 -15.89076 -15.15669 -14.64656 -14.33225 -13.99083 -13.74423 -13.21296 -13.11465 -13.10719 -12.30216 -12.07762 -12.07722 -11.50319 -11.15827 -11.10367 -10.97935 -10.92697 -10.57390 -10.22714 -9.51544 -9.45751 -8.97265 -8.84489 -8.57019 -6.82730 -6.24075 -4.29352 1.86329 2.04450 3.22394 3.28578 3.31925 4.10526 4.36948 4.49144 4.81756 4.96342 5.13489 5.28369 5.29472 5.51978 5.66320 5.69429 5.77295 5.86281 5.92544 6.01220 6.05824 6.27869 6.30757 6.38939 6.56927 6.91761 7.03135 7.27774 7.34836 7.60792 7.88548 7.94348 8.61888 8.70613 8.98420 9.37593 10.86537 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.038565 B = 0.006159 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.869938 B = 4544.996495 C = 5079.800384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.059 4.059 3 C -0.140 4.140 4 C 0.004 3.996 5 C -0.256 4.256 6 C 0.146 3.854 7 N -0.565 5.565 8 C 0.411 3.589 9 N -0.704 5.704 10 C 0.254 3.746 11 C -0.540 4.540 12 H 0.064 0.936 13 C 0.064 3.936 14 N -0.889 5.889 15 Si 0.906 3.094 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.272 1.272 19 C -0.239 4.239 20 H 0.056 0.944 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.080 0.920 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.118 0.882 28 H 0.144 0.856 29 H 0.396 0.604 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.266 0.734 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.652 10.778 2.688 13.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.003 4.003 5 C -0.281 4.281 6 C -0.012 4.012 7 N -0.285 5.285 8 C 0.172 3.828 9 N -0.330 5.330 10 C 0.133 3.867 11 C -0.578 4.578 12 H 0.082 0.918 13 C -0.139 4.139 14 N -0.527 5.527 15 Si 0.733 3.267 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.265 4.265 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.098 0.902 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.136 0.864 28 H 0.161 0.839 29 H 0.231 0.769 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.218 10.180 2.978 12.830 hybrid contribution 0.415 -0.598 -0.434 0.847 sum -6.803 9.582 2.544 12.024 Atomic orbital electron populations 1.21809 0.94315 1.02057 1.01578 1.20139 0.95920 0.96010 0.95708 1.21807 1.01363 0.95004 1.01579 1.19873 0.92980 0.92948 0.94522 1.21356 1.09108 1.04761 0.92828 1.22182 0.91239 0.89704 0.98120 1.67215 1.19566 1.16223 1.25455 1.18631 0.88059 0.87333 0.88752 1.45394 1.50455 1.26032 1.11168 1.19185 0.95310 0.93782 0.78423 1.21186 1.31776 1.11401 0.93419 0.91762 1.24923 0.96254 0.97894 0.94844 1.69943 1.44779 1.40245 0.97736 0.86375 0.80077 0.82364 0.77917 1.20395 1.20957 1.19676 1.21376 1.06267 0.99785 0.99053 0.92472 0.92569 0.92506 0.90198 0.92475 0.92508 0.92564 0.86357 0.83917 0.76947 0.95877 0.95872 0.92408 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.01 37.16 0.33 -1.23 16 2 C -0.06 -0.77 3.12 -91.77 -0.29 -1.06 16 3 C -0.14 -1.57 9.02 37.16 0.34 -1.23 16 4 C 0.00 0.07 4.79 -104.36 -0.50 -0.43 16 5 C -0.26 -3.81 8.83 -39.42 -0.35 -4.16 16 6 C 0.15 2.35 11.17 -17.57 -0.20 2.15 16 7 N -0.56 -11.08 10.39 -12.43 -0.13 -11.21 16 8 C 0.41 8.65 7.65 -155.01 -1.19 7.47 16 9 N -0.70 -15.91 5.72 -61.60 -0.35 -16.26 16 10 C 0.25 6.50 4.64 -5.20 -0.02 6.47 16 11 C -0.54 -14.68 9.28 -34.44 -0.32 -15.00 16 12 H 0.06 1.69 7.60 -52.48 -0.40 1.29 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 15 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 C -0.24 -4.66 8.98 -39.23 -0.35 -5.01 16 20 H 0.06 0.59 7.46 -51.93 -0.39 0.20 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 23 H 0.08 1.08 7.94 -51.93 -0.41 0.67 16 24 H 0.06 0.59 7.49 -51.93 -0.39 0.20 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.12 1.43 7.27 -52.48 -0.38 1.05 16 28 H 0.14 1.80 8.06 -52.48 -0.42 1.37 16 29 H 0.40 8.65 8.44 -40.82 -0.34 8.31 16 30 H 0.02 0.63 7.93 -51.93 -0.41 0.22 16 31 H 0.02 0.63 7.93 -51.93 -0.41 0.22 16 32 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.13 2.68 6.65 -52.49 -0.35 2.33 16 LS Contribution 279.86 15.07 4.22 4.22 Total: -1.00 -28.85 279.86 -7.92 -36.77 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -4.73 Total: 5.63 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -2.64 Total: -10.38 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.25 Total: -52.09 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.85 -7.92 -36.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260255853.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.750 kcal (2) G-P(sol) polarization free energy of solvation -28.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds