Wall clock time and date at job start Mon Mar 30 2020 03:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37900 * 120.46720 * 2 1 4 4 N 1.31988 * 120.84265 * 179.97438 * 3 2 1 5 5 C 1.32000 * 121.91497 * 359.97438 * 4 3 2 6 6 C 1.37894 * 120.83862 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.46636 * 180.02562 * 6 5 4 8 8 C 1.39476 * 119.07048 * 0.02562 * 6 5 4 9 9 N 1.39163 * 120.86839 * 179.97438 * 8 6 5 10 10 C 1.46898 * 111.00137 * 306.13379 * 9 8 6 11 11 C 1.46901 * 111.00215 * 70.08973 * 9 8 6 12 12 C 1.50698 * 109.47239 * 174.11498 * 11 9 8 13 13 H 1.07996 * 120.00175 * 0.02562 * 12 11 9 14 14 C 1.37876 * 119.99934 * 179.97438 * 12 11 9 15 15 N 1.31513 * 120.00203 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99920 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.47014 * 89.99956 * 16 14 12 18 18 H 1.48501 * 109.47174 * 209.99517 * 16 14 12 19 19 H 1.48501 * 109.47248 * 329.99929 * 16 14 12 20 20 H 1.09000 * 109.47537 * 89.99987 * 1 2 3 21 21 H 1.09006 * 109.47247 * 210.00567 * 1 2 3 22 22 H 1.09003 * 109.47291 * 330.00250 * 1 2 3 23 23 H 1.08002 * 119.57315 * 359.94893 * 3 2 1 24 24 H 1.07992 * 119.58265 * 179.97438 * 5 4 3 25 25 H 1.09000 * 109.47161 * 275.55072 * 7 6 5 26 26 H 1.08994 * 109.46806 * 35.55119 * 7 6 5 27 27 H 1.08999 * 109.46962 * 155.54910 * 7 6 5 28 28 H 1.09003 * 109.47271 * 59.99678 * 10 9 8 29 29 H 1.08994 * 109.47557 * 180.02562 * 10 9 8 30 30 H 1.09003 * 109.46902 * 300.00468 * 10 9 8 31 31 H 1.09004 * 109.46556 * 294.11507 * 11 9 8 32 32 H 1.08996 * 109.47219 * 54.11263 * 11 9 8 33 33 H 0.97001 * 119.99970 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2061 1.1886 0.0000 4 7 3.5260 1.1972 0.0005 5 6 4.2312 0.0814 0.0015 6 6 3.6079 -1.1487 0.0016 7 6 4.4212 -2.4174 0.0033 8 6 2.2142 -1.2022 0.0000 9 7 1.5465 -2.4232 -0.0005 10 6 2.0048 -3.2733 -1.1074 11 6 1.7022 -3.1090 1.2892 12 6 0.8515 -4.3528 1.3028 13 1 0.2551 -4.6085 0.4395 14 6 0.8353 -5.1648 2.4169 15 7 0.0932 -6.2505 2.4286 16 14 1.8674 -4.7228 3.9098 17 1 1.0708 -3.8687 4.8271 18 1 2.2726 -5.9644 4.6167 19 1 3.0792 -3.9840 3.4728 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 1.6668 2.1243 -0.0008 24 1 5.3099 0.1324 0.0015 25 1 4.7022 -2.6703 -1.0190 26 1 5.3204 -2.2716 0.6018 27 1 3.8292 -3.2278 0.4285 28 1 3.0738 -3.4595 -1.0041 29 1 1.4667 -4.2209 -1.0847 30 1 1.8137 -2.7700 -2.0552 31 1 2.7478 -3.3824 1.4314 32 1 1.3877 -2.4448 2.0942 33 1 0.0816 -6.8216 3.2127 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260462588.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:15 Heat of formation + Delta-G solvation = 33.808662 kcal Electronic energy + Delta-G solvation = -15188.129901 eV Core-core repulsion = 12827.679846 eV Total energy + Delta-G solvation = -2360.450055 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.75282 -38.51866 -34.83856 -34.63671 -32.85043 -30.02054 -29.06087 -27.96987 -26.32422 -23.84234 -22.24577 -22.06142 -19.17723 -17.95576 -17.61622 -16.68798 -15.77650 -15.51684 -15.37507 -15.22630 -14.84541 -14.56455 -14.13361 -14.04432 -13.44799 -13.27748 -13.15596 -12.94304 -12.62195 -12.55068 -12.36139 -12.33368 -11.92380 -11.50236 -10.82115 -10.50197 -10.12467 -9.68444 -9.12520 -8.31580 -6.35104 0.18157 0.24993 1.31717 1.32970 1.42371 2.29977 2.80075 2.99608 3.05691 3.57663 3.85276 3.89541 4.10572 4.27374 4.39749 4.48648 4.57583 4.64795 4.65074 4.78053 4.80759 4.86782 4.91627 5.06565 5.17886 5.25601 5.33922 5.45515 5.55183 5.74107 5.92633 6.24436 6.67946 6.71056 7.02678 7.27698 8.84223 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.032081 B = 0.009368 C = 0.008904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.589345 B = 2988.289858 C = 3143.918599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.128 4.128 3 C 0.091 3.909 4 N -0.504 5.504 5 C 0.091 3.909 6 C -0.174 4.174 7 C -0.128 4.128 8 C 0.117 3.883 9 N -0.506 5.506 10 C 0.021 3.979 11 C 0.176 3.824 12 C -0.515 4.515 13 H 0.046 0.954 14 C 0.016 3.984 15 N -0.942 5.942 16 Si 0.936 3.064 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.251 1.251 20 H 0.077 0.923 21 H 0.054 0.946 22 H 0.086 0.914 23 H 0.183 0.817 24 H 0.176 0.824 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.013 0.987 32 H 0.015 0.985 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.593 12.037 -4.439 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.131 4.131 3 C -0.066 4.066 4 N -0.212 5.212 5 C -0.065 4.065 6 C -0.178 4.178 7 C -0.184 4.184 8 C 0.014 3.986 9 N -0.227 5.227 10 C -0.125 4.125 11 C 0.051 3.949 12 C -0.554 4.554 13 H 0.064 0.936 14 C -0.182 4.182 15 N -0.582 5.582 16 Si 0.760 3.240 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.175 1.175 20 H 0.095 0.905 21 H 0.073 0.927 22 H 0.104 0.896 23 H 0.200 0.800 24 H 0.193 0.807 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.031 0.969 32 H 0.033 0.967 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.469 12.756 -4.405 15.424 hybrid contribution 0.294 -1.420 0.822 1.666 sum 7.763 11.336 -3.583 14.199 Atomic orbital electron populations 1.20540 0.89006 1.02923 1.02813 1.21181 0.98882 0.92382 1.00670 1.22934 0.89683 0.97750 0.96193 1.67709 1.08795 1.31493 1.13200 1.22803 1.01052 0.86403 0.96287 1.21817 0.94833 0.98408 1.02766 1.21235 0.99726 0.93879 1.03558 1.19442 0.90616 0.92222 0.96291 1.59320 1.55786 1.02387 1.05187 1.22662 1.00470 0.97158 0.92202 1.20060 0.95464 0.92671 0.86684 1.21159 1.26336 1.06239 1.01628 0.93611 1.25700 0.96497 0.94579 1.01407 1.70019 1.41692 1.15347 1.31160 0.85874 0.80189 0.78259 0.79651 1.19537 1.20395 1.17462 0.90470 0.92733 0.89566 0.79986 0.80658 0.89113 0.89502 0.91613 0.92319 0.92112 0.91671 0.96947 0.96730 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.72 9.82 71.23 0.70 -2.02 16 2 C -0.13 -4.05 5.91 -19.65 -0.12 -4.17 16 3 C 0.09 2.52 10.85 84.59 0.92 3.43 16 4 N -0.50 -14.80 10.36 -196.16 -2.03 -16.84 16 5 C 0.09 2.56 10.87 84.59 0.92 3.48 16 6 C -0.17 -5.46 5.66 -19.65 -0.11 -5.57 16 7 C -0.13 -3.58 7.92 71.24 0.56 -3.01 16 8 C 0.12 4.18 4.70 38.58 0.18 4.37 16 9 N -0.51 -20.77 3.83 -723.81 -2.77 -23.54 16 10 C 0.02 0.80 8.86 127.69 1.13 1.93 16 11 C 0.18 8.28 3.47 85.56 0.30 8.58 16 12 C -0.52 -28.87 8.99 25.60 0.23 -28.64 16 13 H 0.05 2.84 7.07 -2.91 -0.02 2.82 16 14 C 0.02 0.93 5.47 84.65 0.46 1.40 16 15 N -0.94 -57.51 13.96 21.45 0.30 -57.21 16 16 Si 0.94 43.22 27.47 68.60 1.88 45.10 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 20 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 21 H 0.05 1.92 7.55 -2.38 -0.02 1.90 16 22 H 0.09 1.92 8.09 -2.39 -0.02 1.90 16 23 H 0.18 3.71 8.06 -2.91 -0.02 3.69 16 24 H 0.18 3.74 8.06 -2.91 -0.02 3.72 16 25 H 0.09 2.17 7.49 -2.39 -0.02 2.16 16 26 H 0.09 2.02 8.13 -2.39 -0.02 2.00 16 27 H 0.07 2.26 3.40 -2.39 -0.01 2.25 16 28 H 0.06 1.98 3.83 -2.39 -0.01 1.97 16 29 H 0.06 2.58 6.47 -2.39 -0.02 2.56 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.01 0.60 4.25 -2.39 -0.01 0.59 16 32 H 0.01 0.71 7.53 -2.39 -0.02 0.70 16 33 H 0.27 15.28 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -64.92 263.41 3.61 -61.31 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 1.05 Total: 11.41 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 5.18 Total: -20.24 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -4.50 Total: -97.59 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.88 Total: 45.10 kcal Total: -64.92 3.61 -61.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260462588.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.118 kcal (2) G-P(sol) polarization free energy of solvation -64.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds