Wall clock time and date at job start Mon Mar 30 2020 03:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31884 * 119.62125 * 2 1 4 4 C 1.31853 * 121.72894 * 180.02562 * 3 2 1 5 5 C 1.38221 * 120.76520 * 359.74158 * 4 3 2 6 6 C 1.38639 * 119.15950 * 0.49232 * 5 4 3 7 7 C 1.50697 * 120.79051 * 179.79851 * 6 5 4 8 8 H 1.09002 * 109.46822 * 219.71373 * 7 6 5 9 9 N 1.46904 * 109.47123 * 339.71241 * 7 6 5 10 10 C 1.53002 * 109.47354 * 99.71412 * 7 6 5 11 11 C 1.50696 * 109.46919 * 174.99865 * 10 7 6 12 12 H 1.07999 * 120.00202 * 359.97438 * 11 10 7 13 13 C 1.37884 * 119.99746 * 180.02562 * 11 10 7 14 14 N 1.31514 * 119.99573 * 0.27650 * 13 11 10 15 15 Si 1.86800 * 119.99781 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47035 * 60.00183 * 15 13 11 17 17 H 1.48503 * 109.46845 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47237 * 299.99939 * 15 13 11 19 19 C 1.38190 * 119.61919 * 179.97438 * 2 1 3 20 20 C 1.50699 * 120.41272 * 359.97438 * 19 2 1 21 21 H 1.08997 * 109.47302 * 270.02123 * 1 2 3 22 22 H 1.09001 * 109.46643 * 30.01867 * 1 2 3 23 23 H 1.08997 * 109.47008 * 150.01467 * 1 2 3 24 24 H 1.08007 * 119.61811 * 180.02562 * 4 3 2 25 25 H 1.07999 * 120.42604 * 180.25989 * 5 4 3 26 26 H 1.00904 * 110.99623 * 60.00262 * 9 7 6 27 27 H 1.00900 * 111.00058 * 183.95379 * 9 7 6 28 28 H 1.09000 * 109.46497 * 55.00130 * 10 7 6 29 29 H 1.08999 * 109.46623 * 295.00194 * 10 7 6 30 30 H 0.97001 * 120.00651 * 359.71956 * 14 13 11 31 31 H 1.08998 * 109.47428 * 270.01981 * 20 19 2 32 32 H 1.09002 * 109.47439 * 30.02480 * 20 19 2 33 33 H 1.09005 * 109.46758 * 150.02172 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1950 -0.0005 5 6 4.2267 0.0341 0.0043 6 6 3.5766 -1.1904 -0.0007 7 6 4.3582 -2.4788 -0.0003 8 1 3.8733 -3.1981 -0.6603 9 7 5.7247 -2.2227 -0.4747 10 6 4.4091 -3.0440 1.4206 11 6 5.0835 -4.3915 1.4013 12 1 5.4398 -4.8038 0.4688 13 6 5.2448 -5.0986 2.5740 14 7 4.8052 -4.5994 3.7085 15 14 6.0802 -6.7692 2.5499 16 1 7.4619 -6.6242 2.0255 17 1 6.1297 -7.3177 3.9290 18 1 5.3135 -7.6935 1.6762 19 6 2.1899 -1.2013 0.0005 20 6 1.4372 -2.5068 0.0017 21 1 -0.3634 0.0004 1.0276 22 1 -0.3633 0.8898 -0.5141 23 1 -0.3633 -0.8901 -0.5136 24 1 3.9754 2.1529 -0.0001 25 1 5.3057 0.0802 0.0081 26 1 6.1957 -1.5584 0.1211 27 1 6.2500 -3.0813 -0.5449 28 1 3.3950 -3.1508 1.8056 29 1 4.9716 -2.3652 2.0616 30 1 4.3711 -3.7320 3.7209 31 1 1.2558 -2.8208 1.0296 32 1 0.4847 -2.3775 -0.5122 33 1 2.0267 -3.2666 -0.5115 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260555128.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:55 Heat of formation + Delta-G solvation = -10.516546 kcal Electronic energy + Delta-G solvation = -14840.031852 eV Core-core repulsion = 12477.659711 eV Total energy + Delta-G solvation = -2362.372141 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.52201 -37.87244 -34.99917 -34.80074 -32.81301 -29.88780 -29.06620 -27.91588 -26.23552 -23.97666 -22.72104 -21.12180 -19.11783 -18.00960 -17.52880 -15.85487 -15.80376 -15.63025 -15.60534 -15.15215 -15.08353 -14.38734 -14.11828 -13.93528 -13.65578 -13.29773 -13.14388 -12.87237 -12.74098 -12.55390 -12.26633 -12.04396 -11.96804 -10.86725 -10.61075 -10.38356 -10.36634 -9.70813 -9.53739 -8.71920 -6.44361 0.17794 0.30621 1.52015 1.59094 1.77790 2.53468 2.80045 3.12175 3.43563 3.51639 3.85671 3.90334 3.99654 4.06978 4.35213 4.50179 4.58685 4.63535 4.65797 4.73741 4.80026 4.84074 4.99872 5.10110 5.17787 5.20950 5.28422 5.54178 5.82864 5.87479 6.11712 6.21710 6.50259 6.54272 7.02702 7.38410 8.67804 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.039494 B = 0.007434 C = 0.006856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.801424 B = 3765.479737 C = 4082.854747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.110 3.890 3 N -0.508 5.508 4 C 0.088 3.912 5 C -0.173 4.173 6 C -0.040 4.040 7 C 0.146 3.854 8 H 0.079 0.921 9 N -0.828 5.828 10 C 0.000 4.000 11 C -0.610 4.610 12 H 0.059 0.941 13 C -0.036 4.036 14 N -0.936 5.936 15 Si 1.116 2.884 16 H -0.267 1.267 17 H -0.289 1.289 18 H -0.269 1.269 19 C -0.149 4.149 20 C -0.108 4.108 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.094 0.906 24 H 0.182 0.818 25 H 0.144 0.856 26 H 0.335 0.665 27 H 0.348 0.652 28 H -0.007 1.007 29 H -0.019 1.019 30 H 0.253 0.747 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.589 6.571 -8.279 11.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.027 4.027 3 N -0.218 5.218 4 C -0.069 4.069 5 C -0.193 4.193 6 C -0.048 4.048 7 C 0.034 3.966 8 H 0.097 0.903 9 N -0.357 5.357 10 C -0.039 4.039 11 C -0.648 4.648 12 H 0.077 0.923 13 C -0.233 4.233 14 N -0.573 5.573 15 Si 0.938 3.062 16 H -0.192 1.192 17 H -0.215 1.215 18 H -0.194 1.194 19 C -0.151 4.151 20 C -0.165 4.165 21 H 0.101 0.899 22 H 0.101 0.899 23 H 0.113 0.887 24 H 0.199 0.801 25 H 0.162 0.838 26 H 0.148 0.852 27 H 0.162 0.838 28 H 0.011 0.989 29 H -0.001 1.001 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.118 0.882 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.945 6.377 -8.014 11.373 hybrid contribution 0.501 0.204 0.406 0.676 sum -4.444 6.582 -7.608 10.998 Atomic orbital electron populations 1.20820 0.86713 1.04458 1.03746 1.21572 0.98435 0.87305 0.95395 1.67527 1.10622 1.29441 1.14222 1.23089 0.89311 0.99075 0.95390 1.22096 1.02240 0.92504 1.02435 1.20507 0.93840 0.95986 0.94488 1.20105 0.89852 0.91666 0.94996 0.90325 1.59265 1.03274 1.17479 1.55643 1.19755 0.95200 0.95512 0.93394 1.22326 1.41727 1.04434 0.96337 0.92299 1.27372 0.96382 1.07621 0.91975 1.70929 1.38252 1.19467 1.28690 0.82934 0.76279 0.70920 0.76092 1.19160 1.21455 1.19395 1.20772 0.93709 0.97724 1.02923 1.20818 1.00596 0.92772 1.02316 0.89876 0.89911 0.88746 0.80072 0.83832 0.85243 0.83847 0.98913 1.00093 0.93791 0.92021 0.88212 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.28 9.77 71.23 0.70 -1.58 16 2 C 0.11 3.46 6.78 42.54 0.29 3.75 16 3 N -0.51 -16.50 10.27 -183.88 -1.89 -18.39 16 4 C 0.09 2.65 11.18 84.69 0.95 3.59 16 5 C -0.17 -5.73 9.33 22.36 0.21 -5.52 16 6 C -0.04 -1.49 5.11 -19.67 -0.10 -1.59 16 7 C 0.15 5.92 2.46 44.17 0.11 6.03 16 8 H 0.08 3.28 6.53 -2.39 -0.02 3.26 16 9 N -0.83 -30.17 8.71 -171.79 -1.50 -31.67 16 10 C 0.00 0.01 3.88 29.85 0.12 0.12 16 11 C -0.61 -32.73 8.55 25.60 0.22 -32.51 16 12 H 0.06 3.01 7.15 -2.91 -0.02 2.99 16 13 C -0.04 -1.99 5.46 84.66 0.46 -1.53 16 14 N -0.94 -57.15 13.65 21.45 0.29 -56.86 16 15 Si 1.12 48.54 29.90 68.60 2.05 50.59 16 16 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 17 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 19 C -0.15 -5.13 5.90 -19.77 -0.12 -5.24 16 20 C -0.11 -3.34 8.62 71.24 0.61 -2.72 16 21 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 22 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.09 1.76 5.94 -2.39 -0.01 1.75 16 24 H 0.18 4.09 8.06 -2.91 -0.02 4.07 16 25 H 0.14 4.30 6.39 -2.91 -0.02 4.28 16 26 H 0.34 11.64 7.36 -89.69 -0.66 10.98 16 27 H 0.35 12.91 7.90 -89.69 -0.71 12.20 16 28 H -0.01 -0.40 7.11 -2.39 -0.02 -0.42 16 29 H -0.02 -1.05 8.01 -2.39 -0.02 -1.07 16 30 H 0.25 15.80 7.22 -92.71 -0.67 15.13 16 31 H 0.06 2.05 7.87 -2.39 -0.02 2.03 16 32 H 0.10 2.31 5.96 -2.39 -0.01 2.30 16 33 H 0.06 2.00 6.26 -2.38 -0.01 1.99 16 Total: -1.00 -65.04 268.94 2.27 -62.77 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: -0.13 Total: 30.76 kcal Atomic # 6 Polarization: -40.65 SS G_CDS: 3.44 Total: -37.21 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -3.09 Total: -106.92 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.05 Total: 50.59 kcal Total: -65.04 2.27 -62.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555128.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.254 kcal (2) G-P(sol) polarization free energy of solvation -65.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds