Wall clock time and date at job start Mon Mar 30 2020 04:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47141 * 2 1 4 4 N 1.30791 * 125.72110 * 89.98078 * 3 2 1 5 5 C 1.34425 * 109.32069 * 180.02562 * 4 3 2 6 6 C 1.33859 * 107.79784 * 0.02562 * 5 4 3 7 7 N 1.34106 * 125.62530 * 269.93694 * 3 2 1 8 8 C 1.46472 * 128.69358 * 359.92455 * 7 3 2 9 9 C 1.53281 * 108.82527 * 197.30747 * 8 7 3 10 10 C 1.53116 * 109.71232 * 309.15389 * 9 8 7 11 11 H 1.09000 * 109.49314 * 309.95369 * 10 9 8 12 12 C 1.50699 * 109.49787 * 189.88925 * 10 9 8 13 13 H 1.07997 * 120.00124 * 359.97438 * 12 10 9 14 14 C 1.37879 * 119.99611 * 180.02562 * 12 10 9 15 15 N 1.31510 * 120.00241 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99661 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47240 * 90.00053 * 16 14 12 18 18 H 1.48507 * 109.47158 * 209.99408 * 16 14 12 19 19 H 1.48497 * 109.47401 * 329.99822 * 16 14 12 20 20 C 1.50712 * 128.68154 * 179.97438 * 6 5 4 21 21 H 1.09000 * 109.47358 * 59.99945 * 1 2 3 22 22 H 1.09006 * 109.47382 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46832 * 299.99281 * 1 2 3 24 24 H 1.09007 * 109.47233 * 240.00219 * 2 1 3 25 25 H 1.09003 * 109.47317 * 120.00589 * 2 1 3 26 26 H 1.07998 * 126.10072 * 179.97438 * 5 4 3 27 27 H 1.09002 * 109.60019 * 77.46537 * 8 7 3 28 28 H 1.08997 * 109.59783 * 317.14883 * 8 7 3 29 29 H 1.08998 * 109.42964 * 69.22806 * 9 8 7 30 30 H 1.09000 * 109.43025 * 189.12737 * 9 8 7 31 31 H 0.97005 * 120.00442 * 180.02562 * 15 14 12 32 32 H 1.08998 * 109.74296 * 76.10721 * 20 6 5 33 33 H 1.08993 * 109.78434 * 315.41208 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2865 2.1409 1.0618 5 6 2.7160 3.3568 0.6823 6 6 2.7264 3.3877 -0.6559 7 7 2.2938 2.1569 -1.0901 8 6 2.1647 1.7826 -2.5003 9 6 2.9721 2.7703 -3.3500 10 6 2.5923 4.2053 -2.9745 11 1 1.5073 4.3092 -2.9854 12 6 3.1993 5.1626 -3.9676 13 1 3.7966 4.7861 -4.7848 14 6 2.9929 6.5191 -3.8322 15 7 2.2660 6.9775 -2.8368 16 14 3.7459 7.7057 -5.0628 17 1 2.7968 7.9247 -6.1837 18 1 4.0279 9.0007 -4.3929 19 1 5.0114 7.1352 -5.5900 20 6 3.1250 4.5187 -1.5689 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8901 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.0009 4.1649 1.3397 27 1 1.1157 1.8200 -2.7940 28 1 2.5500 0.7737 -2.6475 29 1 4.0363 2.6179 -3.1702 30 1 2.7550 2.6028 -4.4050 31 1 2.1204 7.9319 -2.7417 32 1 4.2113 4.6043 -1.5963 33 1 2.6910 5.4522 -1.2110 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261083197.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:12 Heat of formation + Delta-G solvation = 35.350402 kcal Electronic energy + Delta-G solvation = -15075.040485 eV Core-core repulsion = 12714.657285 eV Total energy + Delta-G solvation = -2360.383201 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.66138 -36.13620 -33.77818 -33.00844 -30.92685 -29.50442 -27.14270 -25.03259 -23.35559 -22.87348 -20.59616 -19.73241 -18.04795 -16.41847 -16.16426 -15.19129 -14.61330 -14.17680 -13.71314 -13.36762 -13.06290 -12.81553 -12.78009 -12.37260 -12.19181 -11.64288 -11.29675 -11.11665 -11.02522 -10.91266 -10.62983 -10.47353 -9.91803 -9.48197 -9.35749 -8.91671 -8.82497 -8.49621 -7.42522 -6.10598 -4.17693 2.76475 3.24790 3.32507 3.34713 3.44670 3.76256 4.34826 4.78038 5.10550 5.19293 5.22827 5.34670 5.46649 5.55661 5.66621 5.71327 5.86932 6.04074 6.14899 6.23209 6.29002 6.40309 6.50622 6.68547 6.87630 6.88912 7.32121 7.44524 7.59926 7.73620 7.89349 7.96847 8.25999 8.73424 8.85354 9.48297 10.96441 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.051733 B = 0.007481 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.108554 B = 3742.106829 C = 4019.462507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.030 4.030 3 C 0.180 3.820 4 N -0.499 5.499 5 C -0.056 4.056 6 C 0.013 3.987 7 N -0.448 5.448 8 C 0.105 3.895 9 C -0.124 4.124 10 C 0.047 3.953 11 H 0.029 0.971 12 C -0.520 4.520 13 H 0.058 0.942 14 C 0.064 3.936 15 N -0.887 5.887 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.041 4.041 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.162 0.838 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.263 0.737 32 H 0.061 0.939 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.147 -10.211 1.613 10.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.069 4.069 3 C -0.082 4.082 4 N -0.219 5.219 5 C -0.202 4.202 6 C -0.102 4.102 7 N -0.132 5.132 8 C -0.018 4.018 9 C -0.162 4.162 10 C 0.029 3.971 11 H 0.047 0.953 12 C -0.558 4.558 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.525 5.525 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.080 4.080 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.105 0.895 26 H 0.180 0.820 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.322 -10.363 2.362 10.711 hybrid contribution 0.464 1.059 -1.453 1.857 sum -0.858 -9.304 0.909 9.388 Atomic orbital electron populations 1.21722 0.94522 1.01503 1.02561 1.19797 0.95983 0.88093 1.03073 1.22720 1.06898 0.96523 0.82014 1.70276 1.18890 1.04367 1.28354 1.21699 1.09756 0.96152 0.92595 1.22222 1.03987 0.88307 0.95706 1.45250 1.49114 1.11909 1.06961 1.22020 1.01778 0.99486 0.78484 1.22013 0.98763 0.97100 0.98314 1.18758 0.96912 0.89074 0.92380 0.95258 1.21088 1.32564 0.91061 1.11088 0.92413 1.24984 0.94917 0.98401 0.95512 1.69882 1.38569 1.14014 1.30061 0.86571 0.79590 0.80481 0.81236 1.20676 1.21123 1.19890 1.20561 0.99808 0.93533 0.94056 0.92878 0.92182 0.92019 0.91093 0.89471 0.82047 0.90710 0.90796 0.92317 0.90813 0.92727 0.92050 0.87517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.89 37.16 0.37 -1.36 16 2 C -0.03 -0.41 6.30 -27.88 -0.18 -0.58 16 3 C 0.18 3.30 7.19 -156.02 -1.12 2.18 16 4 N -0.50 -10.29 11.27 -11.09 -0.12 -10.42 16 5 C -0.06 -1.18 11.84 -17.95 -0.21 -1.40 16 6 C 0.01 0.27 6.58 -81.58 -0.54 -0.26 16 7 N -0.45 -8.65 3.13 -109.42 -0.34 -8.99 16 8 C 0.10 1.74 6.67 -3.91 -0.03 1.71 16 9 C -0.12 -2.38 5.16 -26.53 -0.14 -2.52 16 10 C 0.05 1.12 2.12 -91.43 -0.19 0.93 16 11 H 0.03 0.77 8.12 -51.93 -0.42 0.35 16 12 C -0.52 -13.52 8.52 -34.44 -0.29 -13.82 16 13 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 15 N -0.89 -24.48 11.50 55.43 0.64 -23.84 16 16 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 C -0.04 -0.96 5.19 -27.59 -0.14 -1.10 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.81 7.59 -51.92 -0.39 0.42 16 25 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.16 3.08 8.06 -52.49 -0.42 2.65 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.07 1.00 7.72 -51.93 -0.40 0.60 16 29 H 0.06 1.13 8.11 -51.93 -0.42 0.71 16 30 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.06 1.44 8.11 -51.93 -0.42 1.02 16 33 H 0.11 2.74 6.52 -51.93 -0.34 2.40 16 LS Contribution 270.63 15.07 4.08 4.08 Total: -1.00 -29.12 270.63 -8.24 -37.35 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.90 Total: 0.92 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -2.57 Total: -14.60 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.17 Total: -43.25 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.12 -8.24 -37.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261083197.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.705 kcal (2) G-P(sol) polarization free energy of solvation -29.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds