Wall clock time and date at job start Mon Mar 30 2020 04:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47141 * 2 1 4 4 N 1.30791 * 125.72110 * 89.98078 * 3 2 1 5 5 C 1.34425 * 109.32069 * 180.02562 * 4 3 2 6 6 C 1.33859 * 107.79784 * 0.02562 * 5 4 3 7 7 N 1.34106 * 125.62530 * 269.93694 * 3 2 1 8 8 C 1.46472 * 128.69358 * 359.92455 * 7 3 2 9 9 C 1.53281 * 108.82527 * 197.30747 * 8 7 3 10 10 C 1.53116 * 109.71232 * 309.15389 * 9 8 7 11 11 H 1.09000 * 109.49314 * 309.95369 * 10 9 8 12 12 C 1.50699 * 109.49787 * 189.88925 * 10 9 8 13 13 H 1.07997 * 120.00124 * 359.97438 * 12 10 9 14 14 C 1.37879 * 119.99611 * 180.02562 * 12 10 9 15 15 N 1.31510 * 120.00241 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99661 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47240 * 90.00053 * 16 14 12 18 18 H 1.48507 * 109.47158 * 209.99408 * 16 14 12 19 19 H 1.48497 * 109.47401 * 329.99822 * 16 14 12 20 20 C 1.50712 * 128.68154 * 179.97438 * 6 5 4 21 21 H 1.09000 * 109.47358 * 59.99945 * 1 2 3 22 22 H 1.09006 * 109.47382 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46832 * 299.99281 * 1 2 3 24 24 H 1.09007 * 109.47233 * 240.00219 * 2 1 3 25 25 H 1.09003 * 109.47317 * 120.00589 * 2 1 3 26 26 H 1.07998 * 126.10072 * 179.97438 * 5 4 3 27 27 H 1.09002 * 109.60019 * 77.46537 * 8 7 3 28 28 H 1.08997 * 109.59783 * 317.14883 * 8 7 3 29 29 H 1.08998 * 109.42964 * 69.22806 * 9 8 7 30 30 H 1.09000 * 109.43025 * 189.12737 * 9 8 7 31 31 H 0.97005 * 120.00442 * 180.02562 * 15 14 12 32 32 H 1.08998 * 109.74296 * 76.10721 * 20 6 5 33 33 H 1.08993 * 109.78434 * 315.41208 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2865 2.1409 1.0618 5 6 2.7160 3.3568 0.6823 6 6 2.7264 3.3877 -0.6559 7 7 2.2938 2.1569 -1.0901 8 6 2.1647 1.7826 -2.5003 9 6 2.9721 2.7703 -3.3500 10 6 2.5923 4.2053 -2.9745 11 1 1.5073 4.3092 -2.9854 12 6 3.1993 5.1626 -3.9676 13 1 3.7966 4.7861 -4.7848 14 6 2.9929 6.5191 -3.8322 15 7 2.2660 6.9775 -2.8368 16 14 3.7459 7.7057 -5.0628 17 1 2.7968 7.9247 -6.1837 18 1 4.0279 9.0007 -4.3929 19 1 5.0114 7.1352 -5.5900 20 6 3.1250 4.5187 -1.5689 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8901 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.0009 4.1649 1.3397 27 1 1.1157 1.8200 -2.7940 28 1 2.5500 0.7737 -2.6475 29 1 4.0363 2.6179 -3.1702 30 1 2.7550 2.6028 -4.4050 31 1 2.1204 7.9319 -2.7417 32 1 4.2113 4.6043 -1.5963 33 1 2.6910 5.4522 -1.2110 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261083197.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:11 Heat of formation + Delta-G solvation = 19.446099 kcal Electronic energy + Delta-G solvation = -15075.730148 eV Core-core repulsion = 12714.657285 eV Total energy + Delta-G solvation = -2361.072863 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.18885 -37.81762 -35.15094 -34.61912 -32.64516 -31.06087 -28.76678 -26.76840 -24.81181 -24.28426 -22.32212 -21.17213 -19.64777 -18.39778 -17.59920 -16.75139 -16.43492 -15.31735 -15.08372 -14.93469 -14.76294 -14.51263 -14.26704 -13.91110 -13.39860 -13.26043 -12.84640 -12.66354 -12.49212 -12.41120 -12.29164 -11.95187 -11.67757 -11.22407 -11.08385 -10.75055 -10.50689 -10.31761 -9.04260 -8.12849 -6.27084 1.22679 1.42163 1.44024 1.53375 2.00816 2.19339 2.42151 3.15926 3.54578 3.81803 3.94257 4.02080 4.26777 4.33970 4.41913 4.49604 4.56891 4.73621 4.79575 4.88932 4.92335 5.00783 5.07403 5.11944 5.28270 5.34619 5.53840 5.67439 5.72770 5.89952 5.99186 6.26423 6.49720 6.83926 7.19625 7.42464 8.93009 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.051733 B = 0.007481 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.108554 B = 3742.106829 C = 4019.462507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.031 4.031 3 C 0.195 3.805 4 N -0.528 5.528 5 C -0.064 4.064 6 C -0.018 4.018 7 N -0.451 5.451 8 C 0.105 3.895 9 C -0.117 4.117 10 C 0.045 3.955 11 H -0.004 1.004 12 C -0.535 4.535 13 H 0.061 0.939 14 C 0.014 3.986 15 N -0.918 5.918 16 Si 0.956 3.044 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.266 1.266 20 C -0.025 4.025 21 H 0.045 0.955 22 H 0.094 0.906 23 H 0.043 0.957 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.168 0.832 27 H 0.085 0.915 28 H 0.119 0.881 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.262 0.738 32 H 0.049 0.951 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.098 -12.500 0.726 12.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 C -0.068 4.068 4 N -0.248 5.248 5 C -0.209 4.209 6 C -0.133 4.133 7 N -0.135 5.135 8 C -0.016 4.016 9 C -0.154 4.154 10 C 0.026 3.974 11 H 0.014 0.986 12 C -0.573 4.573 13 H 0.079 0.921 14 C -0.185 4.185 15 N -0.556 5.556 16 Si 0.782 3.218 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.190 1.190 20 C -0.064 4.064 21 H 0.064 0.936 22 H 0.113 0.887 23 H 0.062 0.938 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.185 0.815 27 H 0.104 0.896 28 H 0.137 0.863 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.269 -12.662 1.457 12.809 hybrid contribution 0.414 1.721 -1.148 2.110 sum -0.855 -10.941 0.309 10.978 Atomic orbital electron populations 1.21694 0.93355 1.03414 1.01367 1.20110 0.96806 0.84897 1.05195 1.23781 1.04019 0.97939 0.81016 1.70312 1.20503 1.04386 1.29592 1.21930 1.09407 0.96877 0.92725 1.21920 1.06495 0.89215 0.95672 1.45429 1.48711 1.11065 1.08285 1.22208 1.02258 1.00697 0.76468 1.21859 0.99089 0.94689 0.99780 1.18696 0.94573 0.91980 0.92163 0.98634 1.21490 1.32378 0.91844 1.11551 0.92083 1.25771 0.95399 1.00196 0.97133 1.70032 1.39851 1.14119 1.31648 0.85588 0.79025 0.78204 0.79031 1.20176 1.21239 1.19039 1.20155 0.98617 0.93171 0.94496 0.93572 0.88722 0.93751 0.88106 0.88200 0.81491 0.89635 0.86332 0.92442 0.89289 0.92929 0.93260 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.89 71.98 0.71 -2.15 16 2 C -0.03 -0.71 6.30 29.85 0.19 -0.52 16 3 C 0.19 6.74 7.19 138.34 0.99 7.74 16 4 N -0.53 -21.38 11.27 -188.99 -2.13 -23.51 16 5 C -0.06 -2.73 11.84 83.30 0.99 -1.74 16 6 C -0.02 -0.78 6.58 40.68 0.27 -0.52 16 7 N -0.45 -16.71 3.13 -500.10 -1.57 -18.28 16 8 C 0.10 3.18 6.67 86.48 0.58 3.76 16 9 C -0.12 -4.30 5.16 30.73 0.16 -4.14 16 10 C 0.04 2.15 2.12 -11.32 -0.02 2.13 16 11 H 0.00 -0.24 8.12 -2.39 -0.02 -0.26 16 12 C -0.53 -28.12 8.52 25.60 0.22 -27.90 16 13 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 14 C 0.01 0.77 5.30 84.66 0.45 1.22 16 15 N -0.92 -52.28 11.50 21.45 0.25 -52.04 16 16 Si 0.96 42.39 29.54 68.60 2.03 44.41 16 17 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 18 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 20 C -0.03 -1.24 5.19 30.04 0.16 -1.08 16 21 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 23 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.10 1.74 7.59 -2.38 -0.02 1.73 16 25 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.17 6.61 8.06 -2.91 -0.02 6.59 16 27 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.12 2.61 7.72 -2.39 -0.02 2.59 16 29 H 0.06 2.13 8.11 -2.39 -0.02 2.11 16 30 H 0.09 2.99 8.11 -2.39 -0.02 2.97 16 31 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 32 H 0.05 2.42 8.11 -2.39 -0.02 2.40 16 33 H 0.07 4.02 6.52 -2.39 -0.02 4.00 16 Total: -1.00 -64.31 270.63 4.34 -59.98 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 1.08 Total: 12.63 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 4.68 Total: -23.20 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -3.45 Total: -93.82 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -64.31 4.34 -59.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261083197.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.423 kcal (2) G-P(sol) polarization free energy of solvation -64.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds