Wall clock time and date at job start Mon Mar 30 2020 02:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34568 * 126.18949 * 2 1 4 4 C 1.40485 * 108.03744 * 179.88162 * 3 2 1 5 5 N 1.30131 * 108.22906 * 0.11931 * 4 3 2 6 6 N 1.35200 * 126.18876 * 179.68548 * 2 1 3 7 7 C 1.46493 * 126.00504 * 0.02562 * 6 2 1 8 8 C 1.50947 * 123.49068 * 180.30827 * 4 3 2 9 9 C 1.53370 * 108.20129 * 16.55194 * 8 4 3 10 10 H 1.09000 * 109.42525 * 69.42316 * 9 8 4 11 11 C 1.50690 * 109.42912 * 189.31764 * 9 8 4 12 12 H 1.08001 * 120.00513 * 120.00390 * 11 9 8 13 13 C 1.37876 * 119.99936 * 299.99714 * 11 9 8 14 14 N 1.31516 * 120.00104 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00084 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47251 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47438 * 119.99939 * 15 13 11 18 18 H 1.48499 * 109.47358 * 240.00028 * 15 13 11 19 19 C 1.53028 * 109.73874 * 309.34581 * 9 8 4 20 20 C 1.50884 * 128.32622 * 359.71701 * 3 2 1 21 21 H 1.09002 * 109.47152 * 90.00335 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.00435 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.00416 * 1 2 3 24 24 H 1.08995 * 109.47186 * 90.00154 * 7 6 2 25 25 H 1.09001 * 109.47274 * 210.00232 * 7 6 2 26 26 H 1.09004 * 109.47475 * 329.99828 * 7 6 2 27 27 H 1.09002 * 109.71866 * 136.22876 * 8 4 3 28 28 H 1.08997 * 109.71848 * 256.83144 * 8 4 3 29 29 H 0.96998 * 119.99782 * 179.97438 * 14 13 11 30 30 H 1.09003 * 109.43569 * 191.82215 * 19 9 8 31 31 H 1.09009 * 109.42796 * 311.71891 * 19 9 8 32 32 H 1.08996 * 109.72392 * 316.28984 * 20 3 2 33 33 H 1.09000 * 109.71338 * 76.93976 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3016 1.0861 0.0000 4 6 3.6365 0.6484 0.0028 5 7 3.6383 -0.6529 0.0018 6 7 2.3053 -1.0911 0.0060 7 6 1.8573 -2.4859 0.0131 8 6 4.8202 1.5851 0.0104 9 6 4.3278 2.9759 0.4292 10 1 4.0421 2.9578 1.4809 11 6 5.4325 3.9806 0.2271 12 1 5.2874 4.8155 -0.4426 13 6 6.6285 3.8343 0.8973 14 7 6.8050 2.8181 1.7133 15 14 7.9977 5.0802 0.6474 16 1 7.5505 6.1214 -0.3124 17 1 8.3315 5.7164 1.9471 18 1 9.1995 4.3937 0.1092 19 6 3.1183 3.3733 -0.4199 20 6 1.8988 2.5401 -0.0058 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5139 24 1 1.7466 -2.8372 -1.0127 25 1 2.5934 -3.1013 0.5305 26 1 0.8987 -2.5571 0.5270 27 1 5.5660 1.2295 0.7213 28 1 5.2569 1.6339 -0.9871 29 1 7.6466 2.7150 2.1845 30 1 2.9022 4.4312 -0.2706 31 1 3.3391 3.1933 -1.4721 32 1 1.0887 2.6946 -0.7185 33 1 1.5732 2.8355 0.9916 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261124570.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:26 Heat of formation + Delta-G solvation = 35.795807 kcal Electronic energy + Delta-G solvation = -15000.286174 eV Core-core repulsion = 12639.922288 eV Total energy + Delta-G solvation = -2360.363886 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.30306 -37.83827 -34.65134 -34.14110 -32.59327 -30.45001 -28.53713 -27.34017 -26.19728 -23.66996 -22.13128 -20.25913 -19.57053 -18.30237 -17.01771 -16.61988 -16.45937 -15.52777 -15.12326 -14.55072 -14.30907 -14.02322 -13.86996 -13.55033 -13.51080 -13.25580 -13.06630 -12.81668 -12.56866 -12.26053 -12.23337 -12.10535 -11.69825 -11.27220 -10.81713 -10.71443 -10.49626 -9.83964 -8.99330 -8.06921 -6.21430 1.02818 1.42812 1.44307 1.56462 1.79045 1.92270 2.46035 3.20146 3.66831 3.88565 4.26333 4.37230 4.41440 4.44554 4.49697 4.55196 4.66219 4.81986 4.96720 4.97831 5.02161 5.10971 5.12708 5.22508 5.34761 5.43487 5.59829 5.68102 5.78924 6.00273 6.09661 6.36414 6.41258 6.89527 6.96709 7.47631 8.98802 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.049462 B = 0.007621 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.951419 B = 3673.230777 C = 4103.517967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.083 3.917 3 C -0.263 4.263 4 C 0.071 3.929 5 N -0.349 5.349 6 N -0.393 5.393 7 C 0.096 3.904 8 C -0.019 4.019 9 C 0.055 3.945 10 H -0.006 1.006 11 C -0.532 4.532 12 H 0.061 0.939 13 C 0.009 3.991 14 N -0.921 5.921 15 Si 0.958 3.042 16 H -0.262 1.262 17 H -0.281 1.281 18 H -0.283 1.283 19 C -0.101 4.101 20 C -0.027 4.027 21 H 0.096 0.904 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.117 0.883 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.260 0.740 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.401 -6.630 -3.678 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 C -0.274 4.274 4 C -0.095 4.095 5 N -0.171 5.171 6 N -0.177 5.177 7 C -0.043 4.043 8 C -0.059 4.059 9 C 0.036 3.964 10 H 0.012 0.988 11 C -0.570 4.570 12 H 0.079 0.921 13 C -0.189 4.189 14 N -0.561 5.561 15 Si 0.783 3.217 16 H -0.186 1.186 17 H -0.206 1.206 18 H -0.209 1.209 19 C -0.139 4.139 20 C -0.065 4.065 21 H 0.115 0.885 22 H 0.111 0.889 23 H 0.110 0.890 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.136 0.864 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.618 -7.942 -3.565 16.163 hybrid contribution 1.066 0.989 0.163 1.463 sum -12.553 -6.953 -3.401 14.747 Atomic orbital electron populations 1.20561 0.83483 1.05137 1.04613 1.21234 0.96294 0.86095 1.00721 1.20239 0.91637 0.97453 1.18110 1.23002 0.97728 0.91388 0.97424 1.76942 0.98720 1.13173 1.28238 1.48843 1.02682 1.07369 1.58760 1.22094 1.01962 0.75962 1.04302 1.20085 0.92267 0.93989 0.99539 1.18588 0.93061 0.90986 0.93812 0.98771 1.21645 0.99403 1.10007 1.25909 0.92124 1.25850 1.01027 0.97316 0.94742 1.70080 1.25699 1.31049 1.29273 0.85511 0.78923 0.79243 0.78015 1.18630 1.20648 1.20914 1.21539 0.94765 0.98803 0.98744 1.19970 0.97385 0.88080 1.01083 0.88545 0.88887 0.88953 0.89696 0.90014 0.86430 0.91842 0.93853 0.93132 0.92059 0.93694 0.89354 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 9.97 71.24 0.71 -0.72 16 2 C 0.08 2.63 6.92 41.20 0.29 2.92 16 3 C -0.26 -10.47 5.88 -20.10 -0.12 -10.59 16 4 C 0.07 3.40 7.10 43.44 0.31 3.71 16 5 N -0.35 -15.92 12.56 -47.14 -0.59 -16.51 16 6 N -0.39 -13.35 4.02 -356.44 -1.43 -14.78 16 7 C 0.10 1.99 11.28 127.77 1.44 3.43 16 8 C -0.02 -1.02 5.20 30.05 0.16 -0.87 16 9 C 0.05 2.91 2.04 -11.41 -0.02 2.88 16 10 H -0.01 -0.35 8.10 -2.39 -0.02 -0.37 16 11 C -0.53 -30.17 8.51 25.60 0.22 -29.96 16 12 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 13 C 0.01 0.51 5.30 84.65 0.45 0.96 16 14 N -0.92 -55.91 11.45 21.45 0.25 -55.67 16 15 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 16 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 19 C -0.10 -4.32 5.12 30.73 0.16 -4.16 16 20 C -0.03 -0.97 5.97 30.04 0.18 -0.79 16 21 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.09 1.54 8.01 -2.39 -0.02 1.52 16 23 H 0.09 1.16 7.08 -2.38 -0.02 1.14 16 24 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.12 1.50 7.06 -2.39 -0.02 1.48 16 27 H 0.06 3.86 6.42 -2.39 -0.02 3.84 16 28 H 0.04 2.37 8.12 -2.39 -0.02 2.35 16 29 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 30 H 0.06 2.47 8.08 -2.39 -0.02 2.45 16 31 H 0.04 1.91 8.10 -2.38 -0.02 1.89 16 32 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -73.04 269.92 5.09 -67.95 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 1.09 Total: 5.40 kcal Atomic # 6 Polarization: -36.94 SS G_CDS: 3.76 Total: -33.18 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -1.78 Total: -86.96 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -73.04 5.09 -67.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261124570.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.745 kcal (2) G-P(sol) polarization free energy of solvation -73.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds