Wall clock time and date at job start Mon Mar 30 2020 03:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30792 * 125.72293 * 2 1 4 4 C 1.34423 * 109.32386 * 180.02562 * 3 2 1 5 5 C 1.33864 * 107.79772 * 359.97438 * 4 3 2 6 6 N 1.34406 * 125.72533 * 180.02562 * 2 1 3 7 7 C 1.46473 * 128.44882 * 359.82476 * 6 2 1 8 8 C 1.53288 * 108.69561 * 197.29535 * 7 6 2 9 9 H 1.09004 * 109.42883 * 69.26346 * 8 7 6 10 10 C 1.53000 * 109.42844 * 189.16435 * 8 7 6 11 11 C 1.50703 * 109.46912 * 185.00173 * 10 8 7 12 12 H 1.07996 * 119.99751 * 0.02562 * 11 10 8 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 10 8 14 14 N 1.31517 * 120.00094 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99955 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46999 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46942 * 119.99666 * 15 13 11 18 18 H 1.48504 * 109.46979 * 239.99580 * 15 13 11 19 19 C 1.53113 * 109.70495 * 309.23868 * 8 7 6 20 20 C 1.50708 * 128.68231 * 179.84826 * 5 4 3 21 21 H 1.09000 * 109.46943 * 269.99889 * 1 2 3 22 22 H 1.08995 * 109.47234 * 30.00165 * 1 2 3 23 23 H 1.09000 * 109.47022 * 150.00500 * 1 2 3 24 24 H 1.07996 * 126.10589 * 180.02562 * 4 3 2 25 25 H 1.09002 * 109.59700 * 77.53277 * 7 6 2 26 26 H 1.09005 * 109.59408 * 317.05808 * 7 6 2 27 27 H 1.09002 * 109.47398 * 305.00251 * 10 8 7 28 28 H 1.09001 * 109.47194 * 65.00432 * 10 8 7 29 29 H 0.97000 * 120.00333 * 179.97438 * 14 13 11 30 30 H 1.09001 * 109.49451 * 189.86868 * 19 8 7 31 31 H 1.09000 * 109.49605 * 309.96923 * 19 8 7 32 32 H 1.09002 * 109.74116 * 315.43475 * 20 5 4 33 33 H 1.08997 * 109.75005 * 76.10188 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6823 -0.0006 5 6 3.5928 -0.6559 -0.0004 6 7 2.2918 -1.0911 -0.0005 7 6 1.8923 -2.5004 0.0024 8 6 3.0932 -3.3506 0.4322 9 1 3.3058 -3.1711 1.4862 10 6 2.7693 -4.8312 0.2232 11 6 3.8989 -5.6729 0.7586 12 1 4.7612 -5.1992 1.2039 13 6 3.8314 -7.0478 0.6801 14 7 2.7810 -7.6247 0.1383 15 14 5.2312 -8.0911 1.3445 16 1 6.2873 -7.2069 1.8995 17 1 4.7186 -8.9832 2.4152 18 1 5.8008 -8.9126 0.2462 19 6 4.3185 -2.9739 -0.4050 20 6 4.7919 -1.5689 -0.0039 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8899 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 4.4170 1.3397 -0.0003 25 1 1.5768 -2.7930 -0.9991 26 1 1.0711 -2.6461 0.7042 27 1 1.8488 -5.0800 0.7513 28 1 2.6421 -5.0286 -0.8413 29 1 2.7337 -8.5920 0.0827 30 1 5.1180 -3.6921 -0.2232 31 1 4.0536 -2.9834 -1.4623 32 1 5.5254 -1.2105 -0.7262 33 1 5.2374 -1.5957 0.9905 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261227845.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:48 Heat of formation + Delta-G solvation = 31.930670 kcal Electronic energy + Delta-G solvation = -14851.652030 eV Core-core repulsion = 12491.120538 eV Total energy + Delta-G solvation = -2360.531491 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.02065 -36.84801 -33.12378 -33.02023 -31.16301 -29.99449 -26.99957 -26.08975 -23.65991 -22.39870 -20.95260 -19.64107 -18.46823 -16.62944 -16.13490 -15.55778 -14.57135 -14.09891 -13.89373 -13.67233 -13.47133 -12.81175 -12.70815 -12.63221 -12.20871 -12.18795 -11.78762 -11.29911 -10.94883 -10.85542 -10.50011 -10.37140 -9.96311 -9.65430 -9.44568 -9.20298 -9.09804 -8.47850 -7.87724 -6.12371 -4.14975 2.37071 3.15859 3.23876 3.32326 3.35519 3.38521 4.35933 4.69341 4.96948 5.07106 5.19137 5.25692 5.32485 5.44839 5.56872 5.66022 5.69901 5.72185 5.88540 5.94080 6.13647 6.23554 6.26065 6.65962 6.75953 6.81112 6.85260 7.09157 7.46794 7.56546 7.58035 7.84970 8.25891 8.38016 8.90385 9.49827 10.98991 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.049875 B = 0.006745 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.272541 B = 4150.411055 C = 4592.413585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.192 3.808 3 N -0.502 5.502 4 C -0.040 4.040 5 C -0.012 4.012 6 N -0.444 5.444 7 C 0.103 3.897 8 C -0.091 4.091 9 H 0.067 0.933 10 C 0.030 3.970 11 C -0.518 4.518 12 H 0.059 0.941 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.111 4.111 20 C -0.050 4.050 21 H 0.076 0.924 22 H 0.085 0.915 23 H 0.071 0.929 24 H 0.164 0.836 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.019 0.981 28 H 0.020 0.980 29 H 0.261 0.739 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.920 10.475 -0.753 10.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.070 4.070 3 N -0.222 5.222 4 C -0.187 4.187 5 C -0.127 4.127 6 N -0.126 5.126 7 C -0.019 4.019 8 C -0.110 4.110 9 H 0.086 0.914 10 C -0.007 4.007 11 C -0.557 4.557 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.149 4.149 20 C -0.089 4.089 21 H 0.095 0.905 22 H 0.104 0.896 23 H 0.090 0.910 24 H 0.182 0.818 25 H 0.099 0.901 26 H 0.103 0.897 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.363 10.964 -0.798 11.077 hybrid contribution 0.983 -1.534 0.346 1.855 sum -0.380 9.430 -0.452 9.449 Atomic orbital electron populations 1.20103 0.85402 1.03594 1.03153 1.23012 0.95491 0.81675 1.06772 1.70352 1.02026 1.28384 1.21403 1.21720 0.94655 0.92071 1.10290 1.21278 0.86158 0.95181 1.10115 1.45455 1.06229 1.07819 1.53119 1.22320 1.00211 0.76521 1.02804 1.21581 0.91887 0.98066 0.99473 0.91419 1.19095 0.97393 0.86666 0.97560 1.21177 1.04208 0.91027 1.39252 0.92303 1.25011 0.95884 0.98170 0.95282 1.69961 1.28657 1.10099 1.44607 0.86538 0.82348 0.80431 0.78729 1.19665 1.20985 1.20965 1.21694 0.99306 0.94692 0.99220 1.20349 0.92474 0.93810 1.02218 0.90546 0.89630 0.90969 0.81850 0.90053 0.89693 0.96249 0.96129 0.92923 0.89236 0.92498 0.90314 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 10.24 36.00 0.37 -0.39 16 2 C 0.19 3.13 7.94 -155.75 -1.24 1.89 16 3 N -0.50 -8.89 11.27 -11.02 -0.12 -9.01 16 4 C -0.04 -0.66 11.84 -17.95 -0.21 -0.87 16 5 C -0.01 -0.20 6.57 -81.72 -0.54 -0.73 16 6 N -0.44 -7.45 3.13 -109.42 -0.34 -7.79 16 7 C 0.10 1.69 5.90 -3.91 -0.02 1.67 16 8 C -0.09 -1.73 2.13 -90.41 -0.19 -1.92 16 9 H 0.07 1.34 8.11 -51.93 -0.42 0.92 16 10 C 0.03 0.71 4.44 -27.88 -0.12 0.59 16 11 C -0.52 -13.58 8.26 -34.44 -0.28 -13.86 16 12 H 0.06 1.50 7.10 -52.49 -0.37 1.13 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 15 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 C -0.11 -1.95 5.19 -26.36 -0.14 -2.08 16 20 C -0.05 -0.76 6.31 -27.57 -0.17 -0.93 16 21 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 22 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.07 0.76 7.95 -51.93 -0.41 0.34 16 24 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 25 H 0.08 1.30 8.13 -51.93 -0.42 0.88 16 26 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.09 1.67 6.71 -51.93 -0.35 1.32 16 31 H 0.06 1.00 8.12 -51.93 -0.42 0.57 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 272.31 15.07 4.10 4.10 Total: -1.00 -30.04 272.31 -8.21 -38.26 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -4.92 Total: -1.23 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -2.65 Total: -15.16 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.27 Total: -41.71 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.04 -8.21 -38.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227845.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.187 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds