Wall clock time and date at job start Mon Mar 30 2020 03:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30792 * 125.72293 * 2 1 4 4 C 1.34423 * 109.32386 * 180.02562 * 3 2 1 5 5 C 1.33864 * 107.79772 * 359.97438 * 4 3 2 6 6 N 1.34406 * 125.72533 * 180.02562 * 2 1 3 7 7 C 1.46473 * 128.44882 * 359.82476 * 6 2 1 8 8 C 1.53288 * 108.69561 * 197.29535 * 7 6 2 9 9 H 1.09004 * 109.42883 * 69.26346 * 8 7 6 10 10 C 1.53000 * 109.42844 * 189.16435 * 8 7 6 11 11 C 1.50703 * 109.46912 * 185.00173 * 10 8 7 12 12 H 1.07996 * 119.99751 * 0.02562 * 11 10 8 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 10 8 14 14 N 1.31517 * 120.00094 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99955 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46999 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46942 * 119.99666 * 15 13 11 18 18 H 1.48504 * 109.46979 * 239.99580 * 15 13 11 19 19 C 1.53113 * 109.70495 * 309.23868 * 8 7 6 20 20 C 1.50708 * 128.68231 * 179.84826 * 5 4 3 21 21 H 1.09000 * 109.46943 * 269.99889 * 1 2 3 22 22 H 1.08995 * 109.47234 * 30.00165 * 1 2 3 23 23 H 1.09000 * 109.47022 * 150.00500 * 1 2 3 24 24 H 1.07996 * 126.10589 * 180.02562 * 4 3 2 25 25 H 1.09002 * 109.59700 * 77.53277 * 7 6 2 26 26 H 1.09005 * 109.59408 * 317.05808 * 7 6 2 27 27 H 1.09002 * 109.47398 * 305.00251 * 10 8 7 28 28 H 1.09001 * 109.47194 * 65.00432 * 10 8 7 29 29 H 0.97000 * 120.00333 * 179.97438 * 14 13 11 30 30 H 1.09001 * 109.49451 * 189.86868 * 19 8 7 31 31 H 1.09000 * 109.49605 * 309.96923 * 19 8 7 32 32 H 1.09002 * 109.74116 * 315.43475 * 20 5 4 33 33 H 1.08997 * 109.75005 * 76.10188 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6823 -0.0006 5 6 3.5928 -0.6559 -0.0004 6 7 2.2918 -1.0911 -0.0005 7 6 1.8923 -2.5004 0.0024 8 6 3.0932 -3.3506 0.4322 9 1 3.3058 -3.1711 1.4862 10 6 2.7693 -4.8312 0.2232 11 6 3.8989 -5.6729 0.7586 12 1 4.7612 -5.1992 1.2039 13 6 3.8314 -7.0478 0.6801 14 7 2.7810 -7.6247 0.1383 15 14 5.2312 -8.0911 1.3445 16 1 6.2873 -7.2069 1.8995 17 1 4.7186 -8.9832 2.4152 18 1 5.8008 -8.9126 0.2462 19 6 4.3185 -2.9739 -0.4050 20 6 4.7919 -1.5689 -0.0039 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8899 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 4.4170 1.3397 -0.0003 25 1 1.5768 -2.7930 -0.9991 26 1 1.0711 -2.6461 0.7042 27 1 1.8488 -5.0800 0.7513 28 1 2.6421 -5.0286 -0.8413 29 1 2.7337 -8.5920 0.0827 30 1 5.1180 -3.6921 -0.2232 31 1 4.0536 -2.9834 -1.4623 32 1 5.5254 -1.2105 -0.7262 33 1 5.2374 -1.5957 0.9905 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261227845.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:48 Heat of formation + Delta-G solvation = 15.703096 kcal Electronic energy + Delta-G solvation = -14852.355710 eV Core-core repulsion = 12491.120538 eV Total energy + Delta-G solvation = -2361.235172 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.27292 -38.33143 -35.02293 -34.24653 -32.71396 -31.20013 -28.72632 -27.31667 -25.35331 -23.84924 -22.33567 -21.04110 -19.84982 -18.50953 -17.49046 -16.89278 -16.45502 -15.50225 -15.28574 -14.92903 -14.72052 -14.24865 -14.10701 -13.89046 -13.78348 -13.34058 -13.16292 -12.83963 -12.72361 -12.47651 -12.26764 -11.89747 -11.59959 -11.22193 -11.10324 -10.87654 -10.55501 -10.43103 -9.09765 -8.20094 -6.28662 1.13372 1.40363 1.42505 1.53699 1.90134 2.14674 2.41485 3.14942 3.60034 3.66331 3.74514 3.85839 4.05758 4.25153 4.35392 4.46796 4.56074 4.63103 4.71840 4.82427 4.85121 4.96180 5.00605 5.14072 5.23304 5.36102 5.47801 5.54615 5.67405 5.81852 5.86885 6.21206 6.35430 6.86092 7.14010 7.40133 8.91945 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.049875 B = 0.006745 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.272541 B = 4150.411055 C = 4592.413585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.188 3.812 3 N -0.529 5.529 4 C -0.047 4.047 5 C -0.030 4.030 6 N -0.452 5.452 7 C 0.111 3.889 8 C -0.081 4.081 9 H 0.060 0.940 10 C 0.037 3.963 11 C -0.528 4.528 12 H 0.064 0.936 13 C 0.003 3.997 14 N -0.933 5.933 15 Si 0.957 3.043 16 H -0.261 1.261 17 H -0.282 1.282 18 H -0.281 1.281 19 C -0.107 4.107 20 C -0.040 4.040 21 H 0.090 0.910 22 H 0.097 0.903 23 H 0.085 0.915 24 H 0.186 0.814 25 H 0.085 0.915 26 H 0.098 0.902 27 H -0.002 1.002 28 H -0.001 1.001 29 H 0.262 0.738 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.103 0.897 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.282 11.300 -0.426 11.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.074 4.074 3 N -0.250 5.250 4 C -0.193 4.193 5 C -0.145 4.145 6 N -0.135 5.135 7 C -0.010 4.010 8 C -0.100 4.100 9 H 0.078 0.922 10 C 0.000 4.000 11 C -0.566 4.566 12 H 0.082 0.918 13 C -0.195 4.195 14 N -0.573 5.573 15 Si 0.783 3.217 16 H -0.185 1.185 17 H -0.208 1.208 18 H -0.207 1.207 19 C -0.145 4.145 20 C -0.078 4.078 21 H 0.109 0.891 22 H 0.115 0.885 23 H 0.103 0.897 24 H 0.203 0.797 25 H 0.103 0.897 26 H 0.116 0.884 27 H 0.016 0.984 28 H 0.018 0.982 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.121 0.879 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.710 11.810 -0.468 11.840 hybrid contribution 0.748 -1.755 0.235 1.922 sum 0.037 10.055 -0.232 10.058 Atomic orbital electron populations 1.20290 0.82699 1.04842 1.04443 1.23813 0.97115 0.81101 1.05345 1.70385 1.02773 1.29141 1.22661 1.22153 0.95092 0.92440 1.09640 1.21572 0.86509 0.95628 1.10747 1.45522 1.06613 1.07740 1.53626 1.22139 0.99233 0.76368 1.03304 1.21333 0.93806 0.95484 0.99399 0.92200 1.18931 0.95830 0.89689 0.95583 1.21589 1.04863 0.91593 1.38601 0.91832 1.25866 0.98280 0.99683 0.95702 1.70079 1.30670 1.10412 1.46155 0.85505 0.79501 0.78702 0.78014 1.18507 1.20816 1.20681 1.21597 0.98086 0.96113 0.98698 1.20316 0.92472 0.91647 1.03338 0.89140 0.88457 0.89661 0.79655 0.89697 0.88423 0.98363 0.98222 0.92879 0.90647 0.92849 0.87878 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.38 10.24 71.23 0.73 -0.65 16 2 C 0.19 5.78 7.94 138.24 1.10 6.87 16 3 N -0.53 -17.85 11.27 -188.78 -2.13 -19.98 16 4 C -0.05 -1.45 11.84 83.30 0.99 -0.46 16 5 C -0.03 -0.93 6.57 40.73 0.27 -0.67 16 6 N -0.45 -14.47 3.13 -500.10 -1.57 -16.04 16 7 C 0.11 3.55 5.90 86.48 0.51 4.06 16 8 C -0.08 -3.05 2.13 -10.66 -0.02 -3.07 16 9 H 0.06 2.34 8.11 -2.39 -0.02 2.32 16 10 C 0.04 1.78 4.44 29.85 0.13 1.92 16 11 C -0.53 -27.78 8.26 25.60 0.21 -27.57 16 12 H 0.06 3.21 7.10 -2.91 -0.02 3.19 16 13 C 0.00 0.14 5.46 84.65 0.46 0.60 16 14 N -0.93 -54.21 13.29 21.45 0.28 -53.92 16 15 Si 0.96 42.44 29.54 68.60 2.03 44.47 16 16 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 19 C -0.11 -3.65 5.19 30.83 0.16 -3.49 16 20 C -0.04 -1.12 6.31 30.05 0.19 -0.93 16 21 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.08 1.58 7.95 -2.39 -0.02 1.57 16 24 H 0.19 4.65 8.06 -2.91 -0.02 4.62 16 25 H 0.08 2.65 8.13 -2.39 -0.02 2.63 16 26 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 27 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 29 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 30 H 0.07 2.77 6.71 -2.39 -0.02 2.76 16 31 H 0.05 1.83 8.12 -2.39 -0.02 1.81 16 32 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -63.47 272.31 4.42 -59.05 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.08 Total: 9.81 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 4.72 Total: -23.39 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -3.41 Total: -89.94 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -63.47 4.42 -59.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227845.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.752 kcal (2) G-P(sol) polarization free energy of solvation -63.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds