Wall clock time and date at job start Mon Mar 30 2020 03:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46905 * 110.99995 * 2 1 4 4 C 1.50695 * 109.46944 * 66.04457 * 3 2 1 5 5 H 1.08001 * 120.00376 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99938 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00366 * 180.02562 * 6 4 3 8 8 Si 1.86807 * 119.99817 * 0.02562 * 6 4 3 9 9 H 1.48485 * 109.47144 * 89.99902 * 8 6 4 10 10 H 1.48504 * 109.46766 * 209.99962 * 8 6 4 11 11 H 1.48497 * 109.46901 * 329.99521 * 8 6 4 12 12 C 1.46897 * 110.99814 * 236.04544 * 2 1 3 13 13 C 1.50694 * 109.47330 * 293.95439 * 12 2 1 14 14 C 1.38286 * 119.92597 * 269.72654 * 13 12 2 15 15 C 1.38110 * 120.07347 * 179.72493 * 14 13 12 16 16 C 1.38906 * 119.92413 * 0.54584 * 15 14 13 17 17 N 1.39678 * 120.07227 * 179.70626 * 16 15 14 18 18 C 1.38911 * 119.85079 * 359.73014 * 16 15 14 19 19 C 1.38104 * 119.92729 * 359.97438 * 18 16 15 20 20 H 1.08992 * 109.47459 * 183.95199 * 1 2 3 21 21 H 1.09004 * 109.47040 * 303.95350 * 1 2 3 22 22 H 1.09000 * 109.47033 * 63.95302 * 1 2 3 23 23 H 1.09002 * 109.46783 * 186.04686 * 3 2 1 24 24 H 1.09002 * 109.46955 * 306.04307 * 3 2 1 25 25 H 0.96993 * 120.00265 * 180.02562 * 7 6 4 26 26 H 1.09009 * 109.47296 * 53.95365 * 12 2 1 27 27 H 1.09002 * 109.47055 * 173.95064 * 12 2 1 28 28 H 1.07997 * 119.96072 * 359.97438 * 14 13 12 29 29 H 1.07996 * 120.03467 * 180.27543 * 15 14 13 30 30 H 0.96999 * 119.99554 * 180.02562 * 17 16 15 31 31 H 0.96999 * 120.00131 * 0.02562 * 17 16 15 32 32 H 1.08005 * 120.03560 * 180.02562 * 18 16 15 33 33 H 1.07999 * 119.96318 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0746 1.5113 2.0488 6 6 2.0277 3.3492 1.5289 7 7 1.7152 3.9387 2.6622 8 14 3.0009 4.2758 0.2313 9 1 2.0645 4.9803 -0.6806 10 1 3.8881 5.2667 0.8919 11 1 3.8241 3.3170 -0.5486 12 6 1.9954 -0.7660 -1.1376 13 6 1.6369 -2.2204 -0.9729 14 6 2.4980 -3.0718 -0.3051 15 6 2.1698 -4.4041 -0.1474 16 6 0.9786 -4.8909 -0.6704 17 7 0.6465 -6.2390 -0.5181 18 6 0.1186 -4.0340 -1.3456 19 6 0.4500 -2.7016 -1.4944 20 1 -0.3634 -1.0251 0.0708 21 1 -0.3633 0.5740 0.8525 22 1 -0.3633 0.4513 -0.9233 23 1 3.0798 1.3444 -0.1083 24 1 1.5612 1.9274 -0.8310 25 1 1.9898 4.8548 2.8242 26 1 1.5611 -0.3872 -2.0629 27 1 3.0797 -0.6611 -1.1757 28 1 3.4262 -2.6936 0.0971 29 1 2.8407 -5.0675 0.3781 30 1 -0.1854 -6.5779 -0.8841 31 1 1.2478 -6.8363 -0.0464 32 1 -0.8085 -4.4093 -1.7531 33 1 -0.2179 -2.0351 -2.0197 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833159.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:01 Heat of formation + Delta-G solvation = 29.374568 kcal Electronic energy + Delta-G solvation = -14375.664984 eV Core-core repulsion = 12015.022652 eV Total energy + Delta-G solvation = -2360.642332 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.31318 -36.67211 -34.26838 -32.36724 -30.68395 -29.68383 -27.54011 -26.00920 -23.32181 -22.54334 -20.90034 -19.95895 -16.98773 -16.81716 -16.72777 -15.26482 -14.64573 -14.52491 -14.15074 -13.61286 -13.48016 -13.14864 -12.93655 -12.63627 -12.24675 -11.65324 -11.22860 -11.19449 -10.97638 -10.68643 -10.56171 -10.27787 -10.08172 -9.76422 -9.23078 -8.67455 -8.53546 -7.42519 -7.19225 -6.00799 -3.97640 1.67429 1.82311 3.31327 3.38788 3.41257 3.88424 4.07843 4.45906 5.04496 5.13171 5.18250 5.30670 5.38122 5.63279 5.70896 5.94533 5.95592 6.15490 6.27106 6.27704 6.35787 6.49415 6.64905 6.78227 6.91133 7.04828 7.07439 7.09142 7.56030 7.65816 7.74218 7.98829 8.13431 8.72108 9.08620 9.61158 11.12470 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.057965 B = 0.005656 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.936978 B = 4948.950126 C = 4982.988024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.526 5.526 3 C 0.161 3.839 4 C -0.507 4.507 5 H 0.081 0.919 6 C 0.067 3.933 7 N -0.902 5.902 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.094 3.906 13 C -0.118 4.118 14 C -0.051 4.051 15 C -0.199 4.199 16 C 0.204 3.796 17 N -0.885 5.885 18 C -0.200 4.200 19 C -0.066 4.066 20 H 0.052 0.948 21 H 0.077 0.923 22 H 0.009 0.991 23 H 0.028 0.972 24 H -0.017 1.017 25 H 0.263 0.737 26 H 0.028 0.972 27 H 0.073 0.927 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.394 0.606 31 H 0.395 0.605 32 H 0.114 0.886 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 -16.842 -8.962 19.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.249 5.249 3 C 0.034 3.966 4 C -0.545 4.545 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.541 5.541 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.192 1.192 12 C -0.034 4.034 13 C -0.120 4.120 14 C -0.070 4.070 15 C -0.221 4.221 16 C 0.100 3.900 17 N -0.424 5.424 18 C -0.223 4.223 19 C -0.086 4.086 20 H 0.071 0.929 21 H 0.096 0.904 22 H 0.027 0.973 23 H 0.046 0.954 24 H 0.001 0.999 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.091 0.909 28 H 0.140 0.860 29 H 0.133 0.867 30 H 0.221 0.779 31 H 0.222 0.778 32 H 0.132 0.868 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.918 -16.818 -8.434 18.837 hybrid contribution 0.092 0.652 -1.248 1.411 sum -0.826 -16.166 -9.682 18.862 Atomic orbital electron populations 1.22295 0.88378 1.00211 1.00452 1.61973 1.07466 1.15898 1.39589 1.20214 0.95189 0.84188 0.96968 1.21058 1.35360 0.97163 1.00940 0.90120 1.24902 0.95809 0.97355 0.95316 1.69895 1.47065 1.13218 1.23939 0.86857 0.80644 0.80032 0.82180 1.20401 1.21190 1.19170 1.20991 0.99998 0.89812 0.92640 1.19656 0.95474 0.95584 1.01306 1.20793 0.98994 0.92044 0.95212 1.20529 0.97473 0.96579 1.07559 1.17742 0.93514 0.84458 0.94251 1.42406 1.26348 1.07233 1.66453 1.20464 1.00709 0.93989 1.07119 1.20794 0.95696 0.94321 0.97756 0.92935 0.90397 0.97293 0.95408 0.99933 0.92720 0.95393 0.90871 0.85992 0.86684 0.77852 0.77790 0.86815 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 8.95 60.07 0.54 1.25 16 2 N -0.53 -11.49 4.74 -245.82 -1.17 -12.66 16 3 C 0.16 4.01 3.79 -4.98 -0.02 3.99 16 4 C -0.51 -14.71 9.01 -34.44 -0.31 -15.03 16 5 H 0.08 2.55 7.37 -52.49 -0.39 2.17 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 8 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 9 H -0.28 -6.81 7.10 56.52 0.40 -6.40 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 11 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 12 C 0.09 1.69 5.12 -4.98 -0.03 1.66 16 13 C -0.12 -1.89 4.89 -104.59 -0.51 -2.41 16 14 C -0.05 -0.77 9.69 -39.61 -0.38 -1.16 16 15 C -0.20 -2.63 9.90 -39.38 -0.39 -3.02 16 16 C 0.20 2.52 6.75 -83.79 -0.57 1.96 16 17 N -0.88 -7.77 9.09 32.41 0.29 -7.48 16 18 C -0.20 -2.58 9.90 -39.38 -0.39 -2.97 16 19 C -0.07 -0.96 7.95 -39.61 -0.31 -1.28 16 20 H 0.05 0.96 6.16 -51.93 -0.32 0.64 16 21 H 0.08 1.75 6.76 -51.93 -0.35 1.40 16 22 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 23 H 0.03 0.70 6.99 -51.93 -0.36 0.33 16 24 H -0.02 -0.42 7.55 -51.93 -0.39 -0.81 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.03 0.48 8.06 -51.92 -0.42 0.06 16 27 H 0.07 1.28 7.87 -51.93 -0.41 0.87 16 28 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.39 2.72 8.84 -40.82 -0.36 2.36 16 31 H 0.39 2.77 8.84 -40.82 -0.36 2.40 16 32 H 0.11 1.22 8.06 -52.48 -0.42 0.79 16 33 H 0.12 1.57 8.03 -52.49 -0.42 1.15 16 LS Contribution 274.53 15.07 4.14 4.14 Total: -1.00 -31.94 274.53 -7.74 -39.68 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.64 Total: 1.54 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -2.47 Total: -15.12 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.10 Total: -47.36 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.94 -7.74 -39.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833159.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.058 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds