Wall clock time and date at job start Mon Mar 30 2020 03:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46905 * 110.99995 * 2 1 4 4 C 1.50695 * 109.46944 * 66.04457 * 3 2 1 5 5 H 1.08001 * 120.00376 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99938 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00366 * 180.02562 * 6 4 3 8 8 Si 1.86807 * 119.99817 * 0.02562 * 6 4 3 9 9 H 1.48485 * 109.47144 * 89.99902 * 8 6 4 10 10 H 1.48504 * 109.46766 * 209.99962 * 8 6 4 11 11 H 1.48497 * 109.46901 * 329.99521 * 8 6 4 12 12 C 1.46897 * 110.99814 * 236.04544 * 2 1 3 13 13 C 1.50694 * 109.47330 * 293.95439 * 12 2 1 14 14 C 1.38286 * 119.92597 * 269.72654 * 13 12 2 15 15 C 1.38110 * 120.07347 * 179.72493 * 14 13 12 16 16 C 1.38906 * 119.92413 * 0.54584 * 15 14 13 17 17 N 1.39678 * 120.07227 * 179.70626 * 16 15 14 18 18 C 1.38911 * 119.85079 * 359.73014 * 16 15 14 19 19 C 1.38104 * 119.92729 * 359.97438 * 18 16 15 20 20 H 1.08992 * 109.47459 * 183.95199 * 1 2 3 21 21 H 1.09004 * 109.47040 * 303.95350 * 1 2 3 22 22 H 1.09000 * 109.47033 * 63.95302 * 1 2 3 23 23 H 1.09002 * 109.46783 * 186.04686 * 3 2 1 24 24 H 1.09002 * 109.46955 * 306.04307 * 3 2 1 25 25 H 0.96993 * 120.00265 * 180.02562 * 7 6 4 26 26 H 1.09009 * 109.47296 * 53.95365 * 12 2 1 27 27 H 1.09002 * 109.47055 * 173.95064 * 12 2 1 28 28 H 1.07997 * 119.96072 * 359.97438 * 14 13 12 29 29 H 1.07996 * 120.03467 * 180.27543 * 15 14 13 30 30 H 0.96999 * 119.99554 * 180.02562 * 17 16 15 31 31 H 0.96999 * 120.00131 * 0.02562 * 17 16 15 32 32 H 1.08005 * 120.03560 * 180.02562 * 18 16 15 33 33 H 1.07999 * 119.96318 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0746 1.5113 2.0488 6 6 2.0277 3.3492 1.5289 7 7 1.7152 3.9387 2.6622 8 14 3.0009 4.2758 0.2313 9 1 2.0645 4.9803 -0.6806 10 1 3.8881 5.2667 0.8919 11 1 3.8241 3.3170 -0.5486 12 6 1.9954 -0.7660 -1.1376 13 6 1.6369 -2.2204 -0.9729 14 6 2.4980 -3.0718 -0.3051 15 6 2.1698 -4.4041 -0.1474 16 6 0.9786 -4.8909 -0.6704 17 7 0.6465 -6.2390 -0.5181 18 6 0.1186 -4.0340 -1.3456 19 6 0.4500 -2.7016 -1.4944 20 1 -0.3634 -1.0251 0.0708 21 1 -0.3633 0.5740 0.8525 22 1 -0.3633 0.4513 -0.9233 23 1 3.0798 1.3444 -0.1083 24 1 1.5612 1.9274 -0.8310 25 1 1.9898 4.8548 2.8242 26 1 1.5611 -0.3872 -2.0629 27 1 3.0797 -0.6611 -1.1757 28 1 3.4262 -2.6936 0.0971 29 1 2.8407 -5.0675 0.3781 30 1 -0.1854 -6.5779 -0.8841 31 1 1.2478 -6.8363 -0.0464 32 1 -0.8085 -4.4093 -1.7531 33 1 -0.2179 -2.0351 -2.0197 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833159.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:01 Heat of formation + Delta-G solvation = 6.336489 kcal Electronic energy + Delta-G solvation = -14376.663990 eV Core-core repulsion = 12015.022652 eV Total energy + Delta-G solvation = -2361.641338 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.39967 -38.20136 -35.44704 -34.43929 -31.72266 -31.07255 -29.36786 -27.46298 -24.97369 -23.60070 -22.39088 -21.46861 -18.97527 -17.89472 -17.64335 -16.76732 -16.23535 -16.00609 -15.94397 -14.89399 -14.73507 -14.47354 -14.17109 -14.00546 -13.92859 -13.41679 -12.96362 -12.66604 -12.55881 -12.44775 -11.79722 -11.78141 -11.68230 -11.42891 -11.24264 -10.77579 -9.72744 -8.99828 -8.27617 -8.25109 -6.30166 0.63029 0.74304 1.35846 1.37926 1.49185 2.36212 2.94986 3.06616 3.11573 3.55901 4.02282 4.11041 4.25012 4.40519 4.52233 4.62558 4.67045 4.74999 4.85941 4.96225 5.03184 5.06348 5.20703 5.26127 5.48179 5.54845 5.59548 5.95287 6.00833 6.08079 6.40459 6.67651 6.70542 6.76033 7.09373 7.33494 8.90124 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.057965 B = 0.005656 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.936978 B = 4948.950126 C = 4982.988024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.544 5.544 3 C 0.170 3.830 4 C -0.517 4.517 5 H 0.036 0.964 6 C 0.007 3.993 7 N -0.949 5.949 8 Si 0.949 3.051 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.248 1.248 12 C 0.098 3.902 13 C -0.145 4.145 14 C -0.065 4.065 15 C -0.207 4.207 16 C 0.209 3.791 17 N -0.869 5.869 18 C -0.205 4.205 19 C -0.072 4.072 20 H 0.073 0.927 21 H 0.044 0.956 22 H 0.021 0.979 23 H 0.031 0.969 24 H -0.013 1.013 25 H 0.267 0.733 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.118 0.882 29 H 0.134 0.866 30 H 0.406 0.594 31 H 0.405 0.595 32 H 0.138 0.862 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.857 -18.384 -10.873 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.268 5.268 3 C 0.043 3.957 4 C -0.555 4.555 5 H 0.054 0.946 6 C -0.190 4.190 7 N -0.590 5.590 8 Si 0.772 3.228 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.172 1.172 12 C -0.029 4.029 13 C -0.147 4.147 14 C -0.084 4.084 15 C -0.230 4.230 16 C 0.103 3.897 17 N -0.410 5.410 18 C -0.228 4.228 19 C -0.091 4.091 20 H 0.091 0.909 21 H 0.063 0.937 22 H 0.039 0.961 23 H 0.049 0.951 24 H 0.005 0.995 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.092 0.908 28 H 0.136 0.864 29 H 0.152 0.848 30 H 0.235 0.765 31 H 0.235 0.765 32 H 0.155 0.845 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.671 -18.424 -10.354 21.145 hybrid contribution -0.066 0.954 -0.583 1.120 sum -0.737 -17.470 -10.937 20.624 Atomic orbital electron populations 1.22177 0.87758 1.01005 0.99501 1.61874 1.08242 1.14364 1.42326 1.19975 0.95308 0.85822 0.94572 1.21277 1.34827 0.97556 1.01849 0.94606 1.25862 0.96966 0.98366 0.97773 1.70052 1.48682 1.13885 1.26406 0.85687 0.79239 0.78685 0.79159 1.19248 1.20594 1.17203 1.20983 0.99890 0.90691 0.91351 1.19538 0.96966 0.94466 1.03730 1.20889 0.98994 0.93015 0.95504 1.20735 0.98303 0.96164 1.07788 1.17878 0.92928 0.85812 0.93087 1.42390 1.26977 1.05967 1.65641 1.20728 1.01668 0.93455 1.06946 1.20912 0.95191 0.95320 0.97655 0.90853 0.93703 0.96093 0.95138 0.99526 0.92420 0.94516 0.90820 0.86374 0.84789 0.76457 0.76521 0.84450 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.78 8.95 127.69 1.14 2.93 16 2 N -0.54 -23.81 4.74 -931.63 -4.42 -28.23 16 3 C 0.17 8.47 3.79 85.55 0.32 8.79 16 4 C -0.52 -30.86 9.01 25.60 0.23 -30.63 16 5 H 0.04 2.39 7.37 -2.91 -0.02 2.37 16 6 C 0.01 0.44 5.47 84.66 0.46 0.90 16 7 N -0.95 -60.48 13.96 21.45 0.30 -60.18 16 8 Si 0.95 44.75 27.47 68.60 1.88 46.63 16 9 H -0.27 -12.10 7.10 99.48 0.71 -11.39 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 12 C 0.10 3.45 5.12 85.56 0.44 3.89 16 13 C -0.14 -4.49 4.89 -19.84 -0.10 -4.59 16 14 C -0.06 -1.89 9.69 22.25 0.22 -1.67 16 15 C -0.21 -5.06 9.90 22.40 0.22 -4.84 16 16 C 0.21 4.58 6.75 38.21 0.26 4.84 16 17 N -0.87 -12.27 9.09 -51.37 -0.47 -12.73 16 18 C -0.21 -4.73 9.90 22.40 0.22 -4.50 16 19 C -0.07 -1.94 7.95 22.25 0.18 -1.76 16 20 H 0.07 2.64 6.16 -2.39 -0.01 2.62 16 21 H 0.04 2.09 6.76 -2.38 -0.02 2.07 16 22 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.03 1.50 6.99 -2.39 -0.02 1.48 16 24 H -0.01 -0.63 7.55 -2.39 -0.02 -0.64 16 25 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 26 H 0.04 1.21 8.06 -2.38 -0.02 1.20 16 27 H 0.07 2.52 7.87 -2.39 -0.02 2.50 16 28 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 29 H 0.13 2.66 8.06 -2.91 -0.02 2.63 16 30 H 0.41 4.10 8.84 -92.71 -0.82 3.28 16 31 H 0.41 4.28 8.84 -92.71 -0.82 3.46 16 32 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 33 H 0.12 3.07 8.03 -2.91 -0.02 3.04 16 Total: -1.00 -69.69 274.53 0.31 -69.38 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -0.58 Total: 11.78 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 3.60 Total: -26.65 kcal Atomic # 7 Polarization: -96.56 SS G_CDS: -4.59 Total: -101.15 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Total: -69.69 0.31 -69.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833159.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.719 kcal (2) G-P(sol) polarization free energy of solvation -69.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds