Wall clock time and date at job start Mon Mar 30 2020 03:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46909 * 110.99747 * 2 1 4 4 C 1.50697 * 109.47136 * 66.04706 * 3 2 1 5 5 H 1.08002 * 119.99809 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00160 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99600 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99989 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47070 * 60.00043 * 8 6 4 10 10 H 1.48501 * 109.46849 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47310 * 299.99926 * 8 6 4 12 12 C 1.46896 * 111.00280 * 236.04783 * 2 1 3 13 13 C 1.50704 * 109.46918 * 288.09384 * 12 2 1 14 14 C 1.38127 * 120.03529 * 105.22839 * 13 12 2 15 15 C 1.38259 * 120.07189 * 180.29883 * 14 13 12 16 16 C 1.38315 * 120.15054 * 359.44268 * 15 14 13 17 17 C 1.38081 * 120.07086 * 0.55357 * 16 15 14 18 18 C 1.38887 * 120.03843 * 285.24760 * 13 12 2 19 19 N 1.39676 * 120.07349 * 359.95779 * 18 13 12 20 20 H 1.09001 * 109.46829 * 187.46185 * 1 2 3 21 21 H 1.08997 * 109.47306 * 307.45608 * 1 2 3 22 22 H 1.08997 * 109.47340 * 67.46024 * 1 2 3 23 23 H 1.08997 * 109.46884 * 186.04374 * 3 2 1 24 24 H 1.08996 * 109.46903 * 306.04480 * 3 2 1 25 25 H 0.97000 * 119.99697 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.47209 * 168.09126 * 12 2 1 27 27 H 1.08999 * 109.46969 * 48.09507 * 12 2 1 28 28 H 1.07999 * 119.96317 * 0.02562 * 14 13 12 29 29 H 1.08000 * 119.92427 * 179.70492 * 15 14 13 30 30 H 1.07996 * 119.96504 * 180.28037 * 16 15 14 31 31 H 1.08002 * 120.03759 * 179.69648 * 17 16 15 32 32 H 0.97006 * 120.00146 * 354.03059 * 19 18 13 33 33 H 0.96996 * 119.99957 * 174.03316 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0484 6 6 2.0267 3.3496 1.5285 7 7 2.7118 4.0020 0.6149 8 14 1.5816 4.1873 3.1377 9 1 2.1734 3.4304 4.2700 10 1 2.1139 5.5737 3.1377 11 1 0.1045 4.2236 3.2849 12 6 1.9955 -0.7659 -1.1376 13 6 1.7636 -2.2365 -0.9034 14 6 0.7698 -2.8988 -1.5974 15 6 0.5523 -4.2465 -1.3787 16 6 1.3359 -4.9387 -0.4733 17 6 2.3311 -4.2827 0.2238 18 6 2.5486 -2.9272 0.0107 19 7 3.5547 -2.2607 0.7139 20 1 -0.3633 -1.0190 0.1335 21 1 -0.3634 0.6250 0.8158 22 1 -0.3634 0.3939 -0.9491 23 1 3.0797 1.3445 -0.1082 24 1 1.5611 1.9274 -0.8309 25 1 2.9863 4.9181 0.7769 26 1 3.0645 -0.5782 -1.2384 27 1 1.4850 -0.4583 -2.0501 28 1 0.1591 -2.3622 -2.3085 29 1 -0.2286 -4.7609 -1.9192 30 1 1.1664 -5.9924 -0.3081 31 1 2.9395 -4.8227 0.9343 32 1 3.7638 -1.3373 0.5027 33 1 4.0442 -2.7211 1.4132 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833334.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:04 Heat of formation + Delta-G solvation = 24.454683 kcal Electronic energy + Delta-G solvation = -14679.205513 eV Core-core repulsion = 12318.349838 eV Total energy + Delta-G solvation = -2360.855674 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.27168 -36.24340 -34.04348 -32.66712 -30.97342 -28.40379 -27.09347 -26.37250 -23.73307 -21.98613 -21.10114 -19.88542 -16.77570 -16.51166 -16.32063 -15.20342 -14.84193 -14.24084 -13.92746 -13.62733 -13.47238 -13.22147 -12.61961 -12.29763 -11.89682 -11.60759 -11.16125 -10.94993 -10.82186 -10.70349 -10.58829 -10.40612 -10.23335 -9.82291 -9.23684 -8.48250 -8.41920 -7.23314 -7.05854 -6.03817 -4.05121 1.74875 2.00687 3.32567 3.36542 3.39741 4.17833 4.37770 4.43290 5.09664 5.21934 5.27671 5.32455 5.47076 5.67415 5.87085 5.97514 6.03994 6.23719 6.31220 6.38712 6.42429 6.68968 6.80252 6.86660 6.96758 7.25383 7.27411 7.35503 7.79539 7.94178 8.06619 8.21281 8.25025 8.55298 9.02894 9.59178 11.06829 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.046297 B = 0.006519 C = 0.006317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.647518 B = 4294.050823 C = 4431.568893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.533 5.533 3 C 0.191 3.809 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.096 3.904 13 C -0.144 4.144 14 C -0.070 4.070 15 C -0.190 4.190 16 C -0.080 4.080 17 C -0.210 4.210 18 C 0.244 3.756 19 N -0.865 5.865 20 H 0.046 0.954 21 H 0.073 0.927 22 H 0.008 0.992 23 H 0.027 0.973 24 H -0.010 1.010 25 H 0.261 0.739 26 H 0.068 0.932 27 H 0.031 0.969 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.407 0.593 33 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.986 -13.637 -2.636 13.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.257 5.257 3 C 0.066 3.934 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.032 4.032 13 C -0.149 4.149 14 C -0.089 4.089 15 C -0.210 4.210 16 C -0.099 4.099 17 C -0.234 4.234 18 C 0.136 3.864 19 N -0.402 5.402 20 H 0.065 0.935 21 H 0.091 0.909 22 H 0.027 0.973 23 H 0.045 0.955 24 H 0.008 0.992 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.049 0.951 28 H 0.131 0.869 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.238 0.762 33 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.743 -13.650 -2.252 13.855 hybrid contribution -0.242 1.145 0.320 1.213 sum -0.985 -12.505 -1.932 12.692 Atomic orbital electron populations 1.22190 0.88763 0.99997 0.99912 1.62139 1.07210 1.17137 1.39253 1.19755 0.95137 0.81853 0.96629 1.21122 1.34792 0.96872 1.01684 0.91938 1.24986 0.95334 0.97331 0.96950 1.69949 1.38385 1.11494 1.34072 0.86563 0.78726 0.78319 0.83804 1.20227 1.21377 1.20298 1.20851 0.99753 0.89518 0.93076 1.19440 0.98980 0.95697 1.00825 1.20790 0.95901 0.94204 0.98005 1.20733 1.02697 0.94757 1.02848 1.20730 0.94767 0.98809 0.95546 1.20502 1.03708 0.93040 1.06106 1.17572 0.87898 0.90636 0.90245 1.42562 1.39461 1.16780 1.41438 0.93474 0.90872 0.97315 0.95457 0.99212 0.92891 0.91371 0.95071 0.86866 0.87132 0.86972 0.86889 0.76230 0.78175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 9.24 60.07 0.55 1.37 16 2 N -0.53 -11.46 4.64 -245.82 -1.14 -12.60 16 3 C 0.19 4.92 4.71 -4.97 -0.02 4.90 16 4 C -0.51 -14.11 8.41 -34.44 -0.29 -14.40 16 5 H 0.06 1.74 7.15 -52.49 -0.38 1.37 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.10 1.78 4.34 -4.98 -0.02 1.76 16 13 C -0.14 -2.41 4.69 -104.42 -0.49 -2.90 16 14 C -0.07 -1.05 9.34 -39.61 -0.37 -1.42 16 15 C -0.19 -2.57 10.04 -39.55 -0.40 -2.97 16 16 C -0.08 -1.04 10.04 -39.61 -0.40 -1.44 16 17 C -0.21 -2.95 9.90 -39.38 -0.39 -3.34 16 18 C 0.24 3.86 6.74 -83.79 -0.56 3.30 16 19 N -0.87 -12.78 9.00 32.41 0.29 -12.49 16 20 H 0.05 0.88 7.32 -51.93 -0.38 0.50 16 21 H 0.07 1.59 6.69 -51.93 -0.35 1.25 16 22 H 0.01 0.17 8.04 -51.93 -0.42 -0.25 16 23 H 0.03 0.73 7.86 -51.93 -0.41 0.33 16 24 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.07 1.24 6.96 -51.93 -0.36 0.88 16 27 H 0.03 0.57 7.79 -51.93 -0.40 0.16 16 28 H 0.11 1.57 8.00 -52.49 -0.42 1.15 16 29 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.41 6.62 7.11 -40.82 -0.29 6.33 16 33 H 0.39 4.76 8.85 -40.82 -0.36 4.39 16 LS Contribution 277.06 15.07 4.18 4.18 Total: -1.00 -29.72 277.06 -8.03 -37.75 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -4.59 Total: 6.06 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -2.49 Total: -13.69 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.11 Total: -50.90 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.72 -8.03 -37.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833334.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.208 kcal (2) G-P(sol) polarization free energy of solvation -29.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds