Wall clock time and date at job start Mon Mar 30 2020 03:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46909 * 110.99747 * 2 1 4 4 C 1.50697 * 109.47136 * 66.04706 * 3 2 1 5 5 H 1.08002 * 119.99809 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00160 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99600 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99989 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47070 * 60.00043 * 8 6 4 10 10 H 1.48501 * 109.46849 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47310 * 299.99926 * 8 6 4 12 12 C 1.46896 * 111.00280 * 236.04783 * 2 1 3 13 13 C 1.50704 * 109.46918 * 288.09384 * 12 2 1 14 14 C 1.38127 * 120.03529 * 105.22839 * 13 12 2 15 15 C 1.38259 * 120.07189 * 180.29883 * 14 13 12 16 16 C 1.38315 * 120.15054 * 359.44268 * 15 14 13 17 17 C 1.38081 * 120.07086 * 0.55357 * 16 15 14 18 18 C 1.38887 * 120.03843 * 285.24760 * 13 12 2 19 19 N 1.39676 * 120.07349 * 359.95779 * 18 13 12 20 20 H 1.09001 * 109.46829 * 187.46185 * 1 2 3 21 21 H 1.08997 * 109.47306 * 307.45608 * 1 2 3 22 22 H 1.08997 * 109.47340 * 67.46024 * 1 2 3 23 23 H 1.08997 * 109.46884 * 186.04374 * 3 2 1 24 24 H 1.08996 * 109.46903 * 306.04480 * 3 2 1 25 25 H 0.97000 * 119.99697 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.47209 * 168.09126 * 12 2 1 27 27 H 1.08999 * 109.46969 * 48.09507 * 12 2 1 28 28 H 1.07999 * 119.96317 * 0.02562 * 14 13 12 29 29 H 1.08000 * 119.92427 * 179.70492 * 15 14 13 30 30 H 1.07996 * 119.96504 * 180.28037 * 16 15 14 31 31 H 1.08002 * 120.03759 * 179.69648 * 17 16 15 32 32 H 0.97006 * 120.00146 * 354.03059 * 19 18 13 33 33 H 0.96996 * 119.99957 * 174.03316 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0484 6 6 2.0267 3.3496 1.5285 7 7 2.7118 4.0020 0.6149 8 14 1.5816 4.1873 3.1377 9 1 2.1734 3.4304 4.2700 10 1 2.1139 5.5737 3.1377 11 1 0.1045 4.2236 3.2849 12 6 1.9955 -0.7659 -1.1376 13 6 1.7636 -2.2365 -0.9034 14 6 0.7698 -2.8988 -1.5974 15 6 0.5523 -4.2465 -1.3787 16 6 1.3359 -4.9387 -0.4733 17 6 2.3311 -4.2827 0.2238 18 6 2.5486 -2.9272 0.0107 19 7 3.5547 -2.2607 0.7139 20 1 -0.3633 -1.0190 0.1335 21 1 -0.3634 0.6250 0.8158 22 1 -0.3634 0.3939 -0.9491 23 1 3.0797 1.3445 -0.1082 24 1 1.5611 1.9274 -0.8309 25 1 2.9863 4.9181 0.7769 26 1 3.0645 -0.5782 -1.2384 27 1 1.4850 -0.4583 -2.0501 28 1 0.1591 -2.3622 -2.3085 29 1 -0.2286 -4.7609 -1.9192 30 1 1.1664 -5.9924 -0.3081 31 1 2.9395 -4.8227 0.9343 32 1 3.7638 -1.3373 0.5027 33 1 4.0442 -2.7211 1.4132 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833334.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:04 Heat of formation + Delta-G solvation = 4.697453 kcal Electronic energy + Delta-G solvation = -14680.062250 eV Core-core repulsion = 12318.349838 eV Total energy + Delta-G solvation = -2361.712412 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.46678 -37.90591 -35.18932 -34.71372 -32.34018 -29.64366 -29.00288 -27.86680 -25.53283 -23.12308 -22.71646 -21.33640 -18.53012 -17.80942 -17.70084 -16.83215 -16.31789 -15.95718 -15.63388 -14.97889 -14.74344 -14.52539 -13.95693 -13.89087 -13.50387 -13.34427 -12.86401 -12.71001 -12.57592 -12.32291 -12.14734 -11.84437 -11.68200 -11.36195 -11.23627 -10.61486 -9.60031 -8.99498 -8.24833 -8.17596 -6.29933 0.61866 0.89826 1.40931 1.43436 1.51555 2.40186 3.01910 3.12356 3.24339 3.53441 4.02047 4.10194 4.38207 4.42449 4.51946 4.67485 4.73313 4.78462 4.83655 5.07653 5.10782 5.19580 5.26981 5.28937 5.57202 5.65533 5.75725 5.85701 6.05051 6.18475 6.33942 6.62695 6.77473 6.86165 7.12015 7.39662 8.90404 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.046297 B = 0.006519 C = 0.006317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.647518 B = 4294.050823 C = 4431.568893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.533 5.533 3 C 0.207 3.793 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.967 3.033 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.102 3.898 13 C -0.169 4.169 14 C -0.077 4.077 15 C -0.190 4.190 16 C -0.075 4.075 17 C -0.214 4.214 18 C 0.226 3.774 19 N -0.866 5.866 20 H 0.067 0.933 21 H 0.055 0.945 22 H 0.011 0.989 23 H 0.008 0.992 24 H -0.041 1.041 25 H 0.264 0.736 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.120 0.880 29 H 0.137 0.863 30 H 0.145 0.855 31 H 0.134 0.866 32 H 0.397 0.603 33 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.797 -15.413 -1.795 15.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.257 5.257 3 C 0.081 3.919 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.792 3.208 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.195 1.195 12 C -0.026 4.026 13 C -0.175 4.175 14 C -0.096 4.096 15 C -0.211 4.211 16 C -0.094 4.094 17 C -0.237 4.237 18 C 0.119 3.881 19 N -0.404 5.404 20 H 0.086 0.914 21 H 0.074 0.926 22 H 0.029 0.971 23 H 0.026 0.974 24 H -0.023 1.023 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.138 0.862 29 H 0.154 0.846 30 H 0.163 0.837 31 H 0.152 0.848 32 H 0.226 0.774 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -1.560 -15.465 -1.409 15.607 hybrid contribution 0.005 1.589 -0.002 1.589 sum -1.555 -13.875 -1.410 14.033 Atomic orbital electron populations 1.22127 0.87963 1.00815 0.99310 1.62080 1.07915 1.14611 1.41121 1.19417 0.93783 0.83876 0.94850 1.21400 1.34802 0.97433 1.02299 0.92159 1.25870 0.95053 0.98005 1.00537 1.70074 1.39333 1.11891 1.36119 0.85466 0.78731 0.77214 0.79372 1.19392 1.20834 1.19462 1.20797 0.99154 0.90814 0.91815 1.19323 1.00913 0.94331 1.02892 1.20962 0.95517 0.95205 0.97964 1.21067 1.03133 0.94094 1.02761 1.21161 0.93575 1.00356 0.94295 1.20813 1.04132 0.92278 1.06431 1.17829 0.88162 0.91642 0.90486 1.42556 1.39627 1.16335 1.41870 0.91421 0.92623 0.97065 0.97400 1.02308 0.92705 0.92028 0.95179 0.86230 0.84562 0.83748 0.84846 0.77380 0.76901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.89 9.24 127.69 1.18 3.07 16 2 N -0.53 -23.34 4.64 -931.65 -4.32 -27.66 16 3 C 0.21 11.03 4.71 85.55 0.40 11.43 16 4 C -0.52 -29.55 8.41 25.60 0.22 -29.33 16 5 H 0.06 3.38 7.15 -2.91 -0.02 3.36 16 6 C 0.00 0.19 5.46 84.66 0.46 0.66 16 7 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 8 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 12 C 0.10 3.83 4.34 85.56 0.37 4.20 16 13 C -0.17 -5.53 4.69 -19.73 -0.09 -5.62 16 14 C -0.08 -2.19 9.34 22.25 0.21 -1.98 16 15 C -0.19 -4.55 10.04 22.29 0.22 -4.32 16 16 C -0.08 -1.70 10.04 22.25 0.22 -1.47 16 17 C -0.21 -5.42 9.90 22.40 0.22 -5.20 16 18 C 0.23 6.90 6.74 38.21 0.26 7.15 16 19 N -0.87 -25.33 9.00 -51.37 -0.46 -25.80 16 20 H 0.07 2.46 7.32 -2.39 -0.02 2.44 16 21 H 0.05 2.43 6.69 -2.39 -0.02 2.42 16 22 H 0.01 0.43 8.04 -2.39 -0.02 0.42 16 23 H 0.01 0.45 7.86 -2.39 -0.02 0.43 16 24 H -0.04 -2.38 8.12 -2.39 -0.02 -2.40 16 25 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 26 H 0.06 2.34 6.96 -2.39 -0.02 2.33 16 27 H 0.03 1.12 7.79 -2.39 -0.02 1.10 16 28 H 0.12 3.14 8.00 -2.91 -0.02 3.11 16 29 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 30 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 31 H 0.13 2.77 8.06 -2.91 -0.02 2.74 16 32 H 0.40 13.20 7.11 -92.70 -0.66 12.54 16 33 H 0.40 9.48 8.85 -92.71 -0.82 8.66 16 Total: -1.00 -63.39 277.06 0.83 -62.57 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -0.37 Total: 21.72 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 3.67 Total: -21.43 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -4.50 Total: -109.24 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -63.39 0.83 -62.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833334.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.263 kcal (2) G-P(sol) polarization free energy of solvation -63.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds