Wall clock time and date at job start Mon Mar 30 2020 03:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47265 * 2 1 4 4 C 1.36935 * 120.00172 * 275.65810 * 3 2 1 5 5 H 1.08002 * 120.00424 * 34.00313 * 4 3 2 6 6 C 1.38819 * 120.00052 * 214.01104 * 4 3 2 7 7 N 1.31623 * 119.99997 * 22.90094 * 6 4 3 8 8 Si 1.86797 * 120.00057 * 202.89959 * 6 4 3 9 9 H 1.48499 * 109.47149 * 59.99998 * 8 6 4 10 10 H 1.48503 * 109.47192 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47268 * 300.00184 * 8 6 4 12 12 C 1.46499 * 120.00073 * 95.65216 * 3 2 1 13 13 C 1.50698 * 109.47272 * 270.00074 * 12 3 2 14 14 C 1.38288 * 119.92373 * 90.00011 * 13 12 3 15 15 C 1.38110 * 120.07587 * 180.02562 * 14 13 12 16 16 C 1.38911 * 119.92152 * 359.97438 * 15 14 13 17 17 N 1.39672 * 120.07460 * 179.97438 * 16 15 14 18 18 C 1.38916 * 119.85454 * 0.25366 * 16 15 14 19 19 C 1.38107 * 119.92051 * 359.49260 * 18 16 15 20 20 H 1.08994 * 109.47100 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47461 * 300.00137 * 1 2 3 22 22 H 1.09005 * 109.46867 * 60.00170 * 1 2 3 23 23 H 1.09001 * 109.47461 * 239.99863 * 2 1 3 24 24 H 1.09005 * 109.46867 * 119.99830 * 2 1 3 25 25 H 0.96994 * 120.00177 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.47569 * 150.00110 * 12 3 2 27 27 H 1.09003 * 109.47085 * 30.00314 * 12 3 2 28 28 H 1.07999 * 119.96742 * 0.02562 * 14 13 12 29 29 H 1.07995 * 120.03621 * 179.97438 * 15 14 13 30 30 H 0.97007 * 119.99803 * 359.97438 * 17 16 15 31 31 H 0.97001 * 120.00098 * 179.72673 * 17 16 15 32 32 H 1.08001 * 120.03765 * 179.72600 * 18 16 15 33 33 H 1.08003 * 119.96124 * 180.25282 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1364 2.0657 -1.1801 5 1 1.4323 1.8889 -1.9798 6 6 3.1611 2.9869 -1.3487 7 7 4.2518 2.8993 -0.6171 8 14 2.9922 4.3507 -2.6139 9 1 1.8091 5.1862 -2.2862 10 1 4.2137 5.1951 -2.5976 11 1 2.8193 3.7554 -3.9633 12 6 2.3803 2.0301 1.2625 13 6 1.1715 2.7240 1.8354 14 6 0.3277 2.0433 2.6940 15 6 -0.7813 2.6760 3.2205 16 6 -1.0485 3.9977 2.8869 17 7 -2.1695 4.6405 3.4171 18 6 -0.2015 4.6771 2.0204 19 6 0.9087 4.0400 1.5018 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8901 25 1 4.9679 3.5427 -0.7351 26 1 3.1678 2.7619 1.0823 27 1 2.7367 1.2793 1.9679 28 1 0.5362 1.0159 2.9533 29 1 -1.4400 2.1437 3.8906 30 1 -2.7627 4.1637 4.0186 31 1 -2.3529 5.5647 3.1866 32 1 -0.4089 5.7034 1.7556 33 1 1.5699 4.5688 0.8312 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035361382.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:10 Heat of formation + Delta-G solvation = 39.973626 kcal Electronic energy + Delta-G solvation = -15060.011604 eV Core-core repulsion = 12699.828882 eV Total energy + Delta-G solvation = -2360.182723 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.74316 -35.97035 -33.76915 -31.82699 -30.16502 -29.73276 -27.93025 -24.95003 -23.18444 -22.07874 -20.77063 -19.89939 -16.70887 -16.48229 -16.30926 -15.01623 -14.41528 -13.80803 -13.70308 -13.32792 -13.01178 -12.71923 -12.54776 -12.25154 -12.04156 -11.33521 -11.06053 -10.77065 -10.60146 -10.47879 -10.30095 -10.04246 -9.92196 -9.75269 -9.45270 -8.42145 -8.19509 -6.85261 -6.53220 -5.72722 -3.25430 2.15112 2.35953 3.40041 3.46003 3.49334 4.24520 4.50619 4.64147 5.37108 5.53269 5.59266 5.74103 6.04094 6.13987 6.16547 6.27924 6.46836 6.48395 6.55828 6.65481 6.72195 6.84936 6.97993 6.99689 7.21734 7.30740 7.53988 7.62088 7.86149 7.88069 8.02138 8.09418 8.57489 9.25202 9.89561 10.46299 11.26794 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.025541 B = 0.010728 C = 0.008693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.026152 B = 2609.406077 C = 3220.112924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.143 3.857 3 N -0.578 5.578 4 C -0.248 4.248 5 H 0.059 0.941 6 C 0.008 3.992 7 N -0.887 5.887 8 Si 0.890 3.110 9 H -0.282 1.282 10 H -0.290 1.290 11 H -0.282 1.282 12 C 0.175 3.825 13 C -0.118 4.118 14 C -0.076 4.076 15 C -0.203 4.203 16 C 0.188 3.812 17 N -0.890 5.890 18 C -0.200 4.200 19 C -0.053 4.053 20 H 0.032 0.968 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.033 0.967 25 H 0.255 0.745 26 H 0.106 0.894 27 H 0.029 0.971 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.390 0.610 31 H 0.391 0.609 32 H 0.107 0.893 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.605 1.007 7.027 11.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.017 3.983 3 N -0.297 5.297 4 C -0.377 4.377 5 H 0.076 0.924 6 C -0.191 4.191 7 N -0.531 5.531 8 Si 0.720 3.280 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.208 1.208 12 C 0.049 3.951 13 C -0.122 4.122 14 C -0.095 4.095 15 C -0.226 4.226 16 C 0.086 3.914 17 N -0.430 5.430 18 C -0.223 4.223 19 C -0.073 4.073 20 H 0.051 0.949 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.123 0.877 27 H 0.047 0.953 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.217 0.783 31 H 0.218 0.782 32 H 0.125 0.875 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.342 1.032 6.961 10.914 hybrid contribution -0.630 1.001 -0.547 1.303 sum -8.972 2.033 6.413 11.214 Atomic orbital electron populations 1.22394 1.00089 0.98718 1.01718 1.20823 0.91781 0.87128 0.98578 1.43773 1.75624 1.08063 1.02256 1.18978 1.07162 1.18506 0.93093 0.92371 1.25015 0.94249 1.01482 0.98363 1.69969 1.04620 1.35993 1.42478 0.86554 0.77031 0.82730 0.81697 1.20871 1.21618 1.20806 1.20035 0.92990 0.96668 0.85427 1.20985 1.00556 0.94062 0.96614 1.20749 0.93746 0.98538 0.96486 1.20402 1.01264 0.93929 1.07011 1.17642 0.87859 0.91997 0.93930 1.42320 1.28758 1.15703 1.56245 1.20530 0.98295 0.99906 1.03558 1.20862 0.95398 0.94639 0.96380 0.94869 0.93031 0.93463 0.93985 0.94822 0.93527 0.87682 0.95299 0.87260 0.87633 0.78280 0.78199 0.87501 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 10.20 37.16 0.38 -2.90 16 2 C 0.14 3.11 6.44 -4.04 -0.03 3.08 16 3 N -0.58 -14.48 2.44 -174.61 -0.43 -14.91 16 4 C -0.25 -6.79 9.48 -15.06 -0.14 -6.93 16 5 H 0.06 1.62 7.93 -52.49 -0.42 1.20 16 6 C 0.01 0.23 4.95 -17.43 -0.09 0.14 16 7 N -0.89 -25.25 11.31 55.49 0.63 -24.62 16 8 Si 0.89 21.57 29.61 -169.99 -5.03 16.54 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.17 4.16 5.45 -5.20 -0.03 4.13 16 13 C -0.12 -2.51 5.45 -104.59 -0.57 -3.08 16 14 C -0.08 -1.42 7.86 -39.61 -0.31 -1.73 16 15 C -0.20 -3.42 9.90 -39.38 -0.39 -3.81 16 16 C 0.19 3.10 6.75 -83.79 -0.57 2.53 16 17 N -0.89 -10.89 9.09 32.41 0.29 -10.59 16 18 C -0.20 -3.65 9.90 -39.38 -0.39 -4.04 16 19 C -0.05 -1.12 9.69 -39.61 -0.38 -1.51 16 20 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.05 1.00 6.13 -51.93 -0.32 0.68 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.04 0.93 8.09 -51.93 -0.42 0.51 16 24 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16 25 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.11 2.80 5.26 -51.93 -0.27 2.53 16 27 H 0.03 0.65 7.80 -51.93 -0.40 0.25 16 28 H 0.11 1.90 8.02 -52.49 -0.42 1.48 16 29 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.39 3.92 8.84 -40.82 -0.36 3.56 16 31 H 0.39 4.08 8.84 -40.82 -0.36 3.72 16 32 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.12 2.65 8.06 -52.48 -0.42 2.22 16 LS Contribution 277.35 15.07 4.18 4.18 Total: -1.00 -29.30 277.35 -7.50 -36.80 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -4.63 Total: 6.71 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -2.51 Total: -14.11 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.50 Total: -50.12 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.30 -7.50 -36.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035361382.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.776 kcal (2) G-P(sol) polarization free energy of solvation -29.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds