Wall clock time and date at job start Mon Mar 30 2020 03:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.47009 * 2 1 4 4 C 1.36942 * 119.99740 * 275.65471 * 3 2 1 5 5 H 1.08001 * 119.99871 * 34.01084 * 4 3 2 6 6 C 1.38806 * 119.99959 * 214.00985 * 4 3 2 7 7 N 1.31618 * 119.99854 * 22.90580 * 6 4 3 8 8 Si 1.86797 * 120.00152 * 202.90607 * 6 4 3 9 9 H 1.48500 * 109.47415 * 89.99930 * 8 6 4 10 10 H 1.48503 * 109.47294 * 209.99888 * 8 6 4 11 11 H 1.48500 * 109.47104 * 329.99932 * 8 6 4 12 12 C 1.46495 * 120.00412 * 95.65203 * 3 2 1 13 13 C 1.50694 * 109.47469 * 270.00318 * 12 3 2 14 14 C 1.38310 * 119.96496 * 270.02064 * 13 12 3 15 15 C 1.38265 * 120.15321 * 180.02562 * 14 13 12 16 16 C 1.38129 * 120.07205 * 359.97438 * 15 14 13 17 17 C 1.38887 * 119.92463 * 359.97438 * 16 15 14 18 18 N 1.39676 * 120.07318 * 180.02562 * 17 16 15 19 19 C 1.38091 * 119.96327 * 89.99418 * 13 12 3 20 20 H 1.08998 * 109.46977 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47106 * 300.00055 * 1 2 3 22 22 H 1.08998 * 109.47130 * 60.00223 * 1 2 3 23 23 H 1.08996 * 109.47459 * 239.99745 * 2 1 3 24 24 H 1.08998 * 109.47130 * 119.99777 * 2 1 3 25 25 H 0.97003 * 119.99684 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.47231 * 149.99844 * 12 3 2 27 27 H 1.09008 * 109.46718 * 30.00367 * 12 3 2 28 28 H 1.07996 * 119.92118 * 359.97438 * 14 13 12 29 29 H 1.07998 * 119.96070 * 180.02562 * 15 14 13 30 30 H 1.08002 * 120.03374 * 180.02562 * 16 15 14 31 31 H 0.96999 * 120.00374 * 179.97438 * 18 17 16 32 32 H 0.96999 * 119.99853 * 359.97438 * 18 17 16 33 33 H 1.07994 * 120.03523 * 359.72932 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1364 2.0657 -1.1802 5 1 1.4322 1.8888 -1.9798 6 6 3.1610 2.9869 -1.3488 7 7 4.2516 2.8993 -0.6172 8 14 2.9920 4.3507 -2.6140 9 1 2.3639 5.5382 -1.9811 10 1 4.3357 4.7171 -3.1294 11 1 2.1421 3.8811 -3.7376 12 6 2.3803 2.0303 1.2625 13 6 1.1715 2.7241 1.8354 14 6 0.9072 4.0400 1.5014 15 6 -0.2005 4.6805 2.0252 16 6 -1.0476 4.0073 2.8839 17 6 -0.7858 2.6855 3.2205 18 7 -1.6406 2.0017 4.0881 19 6 0.3284 2.0451 2.6928 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 4.9677 3.5429 -0.7353 26 1 3.1677 2.7620 1.0821 27 1 2.7367 1.2795 1.9678 28 1 1.5681 4.5686 0.8306 29 1 -0.4041 5.7079 1.7620 30 1 -1.9129 4.5081 3.2924 31 1 -1.4570 1.0785 4.3222 32 1 -2.4178 2.4501 4.4565 33 1 0.5327 1.0162 2.9494 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035364288.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:13 Heat of formation + Delta-G solvation = 39.485629 kcal Electronic energy + Delta-G solvation = -15120.712340 eV Core-core repulsion = 12760.508456 eV Total energy + Delta-G solvation = -2360.203884 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.74700 -35.91928 -33.84083 -31.85167 -30.87291 -28.79960 -27.78354 -25.49143 -23.45698 -21.61184 -20.86064 -19.91274 -16.76865 -16.39519 -15.90814 -15.19730 -14.77909 -13.85675 -13.75592 -13.29456 -13.12927 -12.70142 -12.46674 -12.28088 -11.78046 -11.24199 -11.07831 -10.88579 -10.59741 -10.51288 -10.26191 -10.00894 -9.93388 -9.83378 -9.65544 -8.45430 -7.95156 -6.94637 -6.57934 -5.75614 -3.28702 2.16918 2.37722 3.39610 3.47199 3.49059 4.25707 4.49798 4.64957 5.34787 5.55484 5.63311 5.69478 6.03179 6.11437 6.20732 6.32467 6.38976 6.44804 6.47279 6.69024 6.75288 6.86746 6.95341 6.96123 7.22830 7.30004 7.55337 7.60319 7.81612 7.86235 8.05202 8.11534 8.54315 9.21509 9.85599 10.41835 11.24127 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.028366 B = 0.010590 C = 0.008806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.869877 B = 2643.441361 C = 3178.845390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.144 3.856 3 N -0.575 5.575 4 C -0.248 4.248 5 H 0.060 0.940 6 C 0.009 3.991 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.285 1.285 10 H -0.292 1.292 11 H -0.278 1.278 12 C 0.167 3.833 13 C -0.023 4.023 14 C -0.152 4.152 15 C -0.083 4.083 16 C -0.219 4.219 17 C 0.200 3.800 18 N -0.888 5.888 19 C -0.193 4.193 20 H 0.032 0.968 21 H 0.051 0.949 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.033 0.967 25 H 0.255 0.745 26 H 0.109 0.891 27 H 0.031 0.969 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.392 0.608 32 H 0.390 0.610 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.215 -0.788 7.336 11.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.018 3.982 3 N -0.295 5.295 4 C -0.378 4.378 5 H 0.078 0.922 6 C -0.190 4.190 7 N -0.529 5.529 8 Si 0.722 3.278 9 H -0.212 1.212 10 H -0.218 1.218 11 H -0.203 1.203 12 C 0.041 3.959 13 C -0.027 4.027 14 C -0.172 4.172 15 C -0.102 4.102 16 C -0.242 4.242 17 C 0.098 3.902 18 N -0.428 5.428 19 C -0.216 4.216 20 H 0.051 0.949 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.127 0.873 27 H 0.049 0.951 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.219 0.781 32 H 0.217 0.783 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.971 -0.704 7.245 10.794 hybrid contribution -0.558 0.632 -0.419 0.941 sum -8.529 -0.072 6.826 10.925 Atomic orbital electron populations 1.22397 1.00025 0.98740 1.01821 1.20831 0.91808 0.86982 0.98627 1.43727 1.75609 1.08045 1.02075 1.19032 1.07250 1.18562 0.92963 0.92201 1.25028 0.94202 1.01418 0.98395 1.69975 1.04637 1.35856 1.42473 0.86441 0.76919 0.82982 0.81435 1.21162 1.21806 1.20334 1.20162 0.93055 0.96931 0.85702 1.20994 0.97658 0.93227 0.90799 1.20893 0.98688 0.95469 1.02181 1.20811 0.94534 0.98727 0.96145 1.20294 1.03024 0.94053 1.06818 1.17741 0.90370 0.91535 0.90561 1.42354 1.30454 1.15670 1.54351 1.20430 0.96881 0.99699 1.04625 0.94881 0.92946 0.93413 0.93858 0.94833 0.93516 0.87339 0.95081 0.86645 0.87342 0.87709 0.78085 0.78317 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 10.20 37.16 0.38 -2.91 16 2 C 0.14 3.10 6.44 -4.04 -0.03 3.08 16 3 N -0.58 -14.37 2.44 -174.61 -0.43 -14.79 16 4 C -0.25 -6.79 9.48 -15.06 -0.14 -6.93 16 5 H 0.06 1.66 7.93 -52.49 -0.42 1.25 16 6 C 0.01 0.25 4.95 -17.43 -0.09 0.17 16 7 N -0.89 -25.15 11.31 55.49 0.63 -24.52 16 8 Si 0.89 21.60 29.61 -169.99 -5.03 16.57 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.17 3.99 5.46 -5.20 -0.03 3.96 16 13 C -0.02 -0.49 5.44 -104.65 -0.57 -1.06 16 14 C -0.15 -3.23 9.70 -39.54 -0.38 -3.62 16 15 C -0.08 -1.53 10.04 -39.61 -0.40 -1.93 16 16 C -0.22 -3.68 9.90 -39.38 -0.39 -4.07 16 17 C 0.20 3.34 6.75 -83.79 -0.57 2.78 16 18 N -0.89 -11.06 9.09 32.41 0.29 -10.77 16 19 C -0.19 -3.62 7.72 -39.38 -0.30 -3.93 16 20 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.05 1.02 6.12 -51.93 -0.32 0.70 16 22 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.04 0.95 8.08 -51.93 -0.42 0.53 16 24 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 25 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.11 2.90 5.26 -51.93 -0.27 2.62 16 27 H 0.03 0.70 7.80 -51.92 -0.40 0.30 16 28 H 0.12 2.65 8.06 -52.49 -0.42 2.23 16 29 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.39 4.25 8.84 -40.82 -0.36 3.89 16 32 H 0.39 3.96 8.84 -40.82 -0.36 3.60 16 33 H 0.11 1.90 8.01 -52.49 -0.42 1.48 16 LS Contribution 277.35 15.07 4.18 4.18 Total: -1.00 -29.17 277.35 -7.50 -36.67 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -4.63 Total: 7.13 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -2.51 Total: -14.46 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.50 Total: -50.08 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.17 -7.50 -36.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035364288.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.154 kcal (2) G-P(sol) polarization free energy of solvation -29.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds