Wall clock time and date at job start Mon Mar 30 2020 03:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.46835 * 2 1 4 4 C 1.36943 * 120.00346 * 264.43349 * 3 2 1 5 5 H 1.07996 * 119.99860 * 142.29316 * 4 3 2 6 6 C 1.38815 * 119.99798 * 322.29994 * 4 3 2 7 7 N 1.31611 * 120.00101 * 340.11456 * 6 4 3 8 8 Si 1.86797 * 119.99628 * 160.11483 * 6 4 3 9 9 H 1.48502 * 109.46911 * 90.00058 * 8 6 4 10 10 H 1.48503 * 109.47074 * 210.00048 * 8 6 4 11 11 H 1.48498 * 109.47553 * 329.99705 * 8 6 4 12 12 C 1.46504 * 120.00257 * 84.44350 * 3 2 1 13 13 C 1.50690 * 109.47522 * 84.36559 * 12 3 2 14 14 C 1.38127 * 120.04590 * 254.13889 * 13 12 3 15 15 C 1.38256 * 120.07800 * 180.30193 * 14 13 12 16 16 C 1.38316 * 120.15027 * 359.44043 * 15 14 13 17 17 C 1.38082 * 120.07006 * 0.56187 * 16 15 14 18 18 C 1.38897 * 120.03315 * 74.16147 * 13 12 3 19 19 N 1.39672 * 120.07683 * 359.95708 * 18 13 12 20 20 H 1.08996 * 109.47000 * 60.00104 * 1 2 3 21 21 H 1.09001 * 109.46924 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47042 * 299.99827 * 1 2 3 23 23 H 1.09000 * 109.47042 * 240.00173 * 2 1 3 24 24 H 1.09003 * 109.47361 * 120.00028 * 2 1 3 25 25 H 0.97003 * 120.00059 * 180.02562 * 7 6 4 26 26 H 1.09007 * 109.46547 * 324.36915 * 12 3 2 27 27 H 1.08998 * 109.47278 * 204.37939 * 12 3 2 28 28 H 1.07998 * 119.95585 * 0.02562 * 14 13 12 29 29 H 1.08004 * 119.92593 * 179.70353 * 15 14 13 30 30 H 1.07997 * 119.95921 * 180.28034 * 16 15 14 31 31 H 1.08006 * 120.03452 * 179.69830 * 17 16 15 32 32 H 0.97007 * 119.99676 * 6.57691 * 19 18 13 33 33 H 0.96997 * 120.00367 * 186.57554 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3550 1.9885 -1.1803 5 1 2.1307 3.0338 -1.3329 6 6 2.9844 1.2604 -2.1806 7 7 3.6046 0.1375 -1.8863 8 14 2.9513 1.8744 -3.9445 9 1 4.1261 2.7500 -4.1859 10 1 2.9979 0.7163 -4.8728 11 1 1.7034 2.6451 -4.1770 12 6 2.1466 2.1128 1.2628 13 6 3.4707 1.7831 1.9021 14 6 3.5187 0.9515 3.0040 15 6 4.7325 0.6536 3.5949 16 6 5.9038 1.1774 3.0783 17 6 5.8631 2.0094 1.9771 18 6 4.6445 2.3155 1.3843 19 7 4.5998 3.1563 0.2700 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 4.0448 -0.3711 -2.5852 26 1 1.3373 1.8243 1.9336 27 1 2.0933 3.1841 1.0690 28 1 2.6064 0.5372 3.4070 29 1 4.7667 0.0069 4.4593 30 1 6.8508 0.9389 3.5396 31 1 6.7776 2.4219 1.5771 32 1 3.7448 3.4460 -0.0851 33 1 5.4237 3.4507 -0.1489 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035364588.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:15 Heat of formation + Delta-G solvation = 24.400920 kcal Electronic energy + Delta-G solvation = -15330.952658 eV Core-core repulsion = 12970.094652 eV Total energy + Delta-G solvation = -2360.858006 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.19613 -37.46451 -34.95939 -33.67413 -32.40383 -30.51199 -29.27812 -26.96459 -25.21655 -22.96452 -22.65769 -21.20955 -18.60470 -17.72938 -17.31606 -16.73497 -16.12711 -15.77177 -15.48980 -14.58586 -14.58090 -14.19294 -14.04527 -13.61965 -13.27403 -13.08692 -12.83087 -12.69509 -12.40940 -12.09006 -11.89721 -11.66695 -11.62872 -11.38444 -11.17761 -10.41704 -9.44027 -8.46265 -8.01102 -7.73968 -5.32592 0.79184 1.06484 1.44124 1.50146 1.56356 2.53610 3.19402 3.29950 3.57314 3.90544 4.24349 4.32369 4.49964 4.60865 4.65832 4.87861 4.88751 4.95709 4.98783 5.10257 5.21895 5.30506 5.43288 5.54255 5.69116 5.74855 5.88630 5.92144 6.01171 6.35311 6.52477 7.01262 7.24532 7.32168 7.93228 8.50278 9.22581 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.027603 B = 0.011599 C = 0.009403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.153745 B = 2413.358220 C = 2977.019643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.147 3.853 3 N -0.586 5.586 4 C -0.251 4.251 5 H 0.058 0.942 6 C -0.021 4.021 7 N -0.906 5.906 8 Si 0.943 3.057 9 H -0.285 1.285 10 H -0.301 1.301 11 H -0.274 1.274 12 C 0.186 3.814 13 C -0.185 4.185 14 C -0.086 4.086 15 C -0.201 4.201 16 C -0.088 4.088 17 C -0.230 4.230 18 C 0.233 3.767 19 N -0.856 5.856 20 H 0.036 0.964 21 H 0.054 0.946 22 H 0.048 0.952 23 H 0.058 0.942 24 H 0.014 0.986 25 H 0.245 0.755 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.120 0.880 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.119 0.881 32 H 0.401 0.599 33 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.450 2.982 7.105 7.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.021 3.979 3 N -0.307 5.307 4 C -0.381 4.381 5 H 0.075 0.925 6 C -0.219 4.219 7 N -0.549 5.549 8 Si 0.772 3.228 9 H -0.212 1.212 10 H -0.228 1.228 11 H -0.199 1.199 12 C 0.061 3.939 13 C -0.192 4.192 14 C -0.106 4.106 15 C -0.221 4.221 16 C -0.106 4.106 17 C -0.254 4.254 18 C 0.125 3.875 19 N -0.394 5.394 20 H 0.055 0.945 21 H 0.073 0.927 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.033 0.967 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.138 0.862 29 H 0.149 0.851 30 H 0.154 0.846 31 H 0.137 0.863 32 H 0.233 0.767 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.484 2.883 6.993 7.579 hybrid contribution 0.273 0.153 -1.559 1.591 sum 0.757 3.036 5.433 6.270 Atomic orbital electron populations 1.22135 0.98263 1.00075 1.00415 1.20680 0.91494 0.86296 0.99475 1.44047 1.73697 1.11723 1.01206 1.19002 1.31460 0.95562 0.92104 0.92455 1.25668 0.96506 0.98261 1.01493 1.70164 1.35040 1.17813 1.31874 0.85693 0.77924 0.77011 0.82173 1.21167 1.22776 1.19889 1.19839 0.91295 0.95354 0.87438 1.20544 0.96677 1.03164 0.98794 1.20939 0.98282 0.96502 0.94833 1.20988 0.92440 1.05421 1.03231 1.21000 0.98659 0.95818 0.95161 1.20733 0.95890 1.07318 1.01421 1.17819 0.93583 0.89114 0.87004 1.42666 1.11012 1.53928 1.31821 0.94487 0.92744 0.93340 0.92440 0.96729 0.94589 0.92886 0.93363 0.86219 0.85091 0.84629 0.86279 0.76658 0.78319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.80 10.23 71.98 0.74 -5.06 16 2 C 0.15 6.89 5.96 86.38 0.51 7.40 16 3 N -0.59 -27.71 2.41 -706.34 -1.70 -29.41 16 4 C -0.25 -12.59 7.05 84.03 0.59 -12.00 16 5 H 0.06 2.83 7.54 -2.91 -0.02 2.81 16 6 C -0.02 -1.09 4.94 84.86 0.42 -0.67 16 7 N -0.91 -51.34 11.47 21.65 0.25 -51.10 16 8 Si 0.94 42.86 29.60 68.60 2.03 44.89 16 9 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 10 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 C 0.19 7.69 5.38 85.63 0.46 8.15 16 13 C -0.18 -7.60 5.47 -19.74 -0.11 -7.70 16 14 C -0.09 -3.18 9.66 22.25 0.21 -2.96 16 15 C -0.20 -6.70 10.04 22.29 0.22 -6.48 16 16 C -0.09 -2.91 10.04 22.25 0.22 -2.68 16 17 C -0.23 -8.49 9.90 22.40 0.22 -8.27 16 18 C 0.23 9.52 6.74 38.22 0.26 9.77 16 19 N -0.86 -33.42 8.43 -51.37 -0.43 -33.85 16 20 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.05 1.71 8.09 -2.39 -0.02 1.69 16 23 H 0.06 3.12 5.55 -2.39 -0.01 3.10 16 24 H 0.01 0.68 8.11 -2.39 -0.02 0.66 16 25 H 0.24 13.73 8.31 -92.71 -0.77 12.96 16 26 H 0.05 2.01 7.87 -2.38 -0.02 1.99 16 27 H 0.05 1.93 7.18 -2.39 -0.02 1.92 16 28 H 0.12 3.97 7.99 -2.91 -0.02 3.95 16 29 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 30 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 31 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 32 H 0.40 16.35 4.90 -92.70 -0.45 15.90 16 33 H 0.39 13.61 8.85 -92.71 -0.82 12.79 16 Total: -1.00 -58.47 273.49 3.73 -54.73 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: -0.17 Total: 35.23 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 3.76 Total: -20.49 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -1.89 Total: -114.36 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -58.47 3.73 -54.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035364588.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.134 kcal (2) G-P(sol) polarization free energy of solvation -58.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds