Wall clock time and date at job start Mon Mar 30 2020 03:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00381 * 2 1 4 4 C 1.53000 * 109.46840 * 269.99975 * 3 2 1 5 5 C 1.50706 * 109.46735 * 180.02562 * 4 3 2 6 6 H 1.07996 * 119.99928 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99611 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00327 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99743 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46828 * 90.00241 * 9 7 5 11 11 H 1.48494 * 109.47178 * 209.99936 * 9 7 5 12 12 H 1.48500 * 109.47075 * 330.00183 * 9 7 5 13 13 C 1.39670 * 119.99656 * 179.97438 * 2 1 3 14 14 C 1.38998 * 120.03729 * 179.72945 * 13 2 1 15 15 C 1.38128 * 120.07429 * 179.70257 * 14 13 2 16 16 C 1.38177 * 120.14922 * 0.59441 * 15 14 13 17 17 C 1.38960 * 120.07198 * 359.68230 * 16 15 14 18 18 N 1.39664 * 120.03791 * 179.97438 * 17 16 15 19 19 C 1.38755 * 120.04042 * 0.02562 * 13 2 1 20 20 H 1.09000 * 109.46899 * 89.99956 * 1 2 3 21 21 H 1.08992 * 109.47334 * 209.99920 * 1 2 3 22 22 H 1.08994 * 109.46680 * 330.00544 * 1 2 3 23 23 H 1.09002 * 109.47391 * 149.99645 * 3 2 1 24 24 H 1.09001 * 109.46813 * 29.99701 * 3 2 1 25 25 H 1.09001 * 109.47194 * 299.99493 * 4 3 2 26 26 H 1.08992 * 109.47399 * 59.99666 * 4 3 2 27 27 H 0.97000 * 120.00354 * 180.02562 * 8 7 5 28 28 H 1.08009 * 119.96027 * 359.97438 * 14 13 2 29 29 H 1.08006 * 119.92967 * 180.27721 * 15 14 13 30 30 H 1.07998 * 119.97111 * 179.70084 * 16 15 14 31 31 H 0.97002 * 120.00127 * 180.02562 * 18 17 16 32 32 H 0.97002 * 120.00037 * 0.02562 * 18 17 16 33 33 H 1.08002 * 120.06981 * 359.97438 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2068 3.0150 -1.4425 6 1 3.4767 3.4827 -0.5072 7 6 3.5521 3.6117 -2.6366 8 7 3.2237 3.0420 -3.7755 9 14 4.4862 5.2293 -2.6366 10 1 5.9462 4.9578 -2.6359 11 1 4.1281 6.0077 -3.8494 12 1 4.1270 6.0084 -1.4245 13 6 2.1633 -1.2096 0.0005 14 6 3.5533 -1.2106 -0.0051 15 6 4.2446 -2.4064 0.0016 16 6 3.5576 -3.6053 0.0016 17 6 2.1680 -3.6115 0.0015 18 7 1.4743 -4.8237 0.0010 19 6 1.4703 -2.4117 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3632 0.8900 0.5137 23 1 3.1500 1.1383 0.5139 24 1 1.6085 2.0283 0.5138 25 1 3.0417 0.9506 -1.9563 26 1 1.5003 1.8406 -1.9564 27 1 3.4670 3.4615 -4.6156 28 1 4.0933 -0.2752 -0.0104 29 1 5.3247 -2.4044 0.0017 30 1 4.1011 -4.5385 0.0020 31 1 0.5043 -4.8274 0.0005 32 1 1.9625 -5.6619 0.0010 33 1 0.3903 -2.4137 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041023109.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:26 Heat of formation + Delta-G solvation = 24.483773 kcal Electronic energy + Delta-G solvation = -14456.972325 eV Core-core repulsion = 12096.117912 eV Total energy + Delta-G solvation = -2360.854413 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.17052 -36.43504 -33.70350 -33.03910 -30.56992 -28.94871 -28.19954 -25.90780 -24.08481 -21.65685 -21.41481 -19.71731 -17.16970 -16.58077 -16.28902 -15.31053 -14.60722 -14.58415 -14.45124 -13.84201 -13.26527 -12.84051 -12.59179 -12.45971 -12.21114 -11.62916 -11.40942 -10.98425 -10.94645 -10.73079 -10.50657 -10.44207 -9.80105 -9.77466 -9.15893 -8.92956 -8.35097 -7.36184 -6.57762 -5.99490 -4.03718 2.08634 2.28523 3.32297 3.38415 3.41125 3.75742 4.17081 4.46798 4.49694 5.34870 5.35975 5.49955 5.65436 5.84842 5.89884 6.01133 6.09868 6.15330 6.19620 6.33761 6.51718 6.73844 6.87779 6.92527 7.14333 7.19772 7.65745 7.68773 7.81419 7.87104 7.98196 8.09275 8.20928 8.41139 9.03990 9.60484 11.11293 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.041734 B = 0.006261 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.754594 B = 4471.297629 C = 4781.108104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.625 5.625 3 C 0.124 3.876 4 C 0.009 3.991 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.059 3.941 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.269 3.731 14 C -0.241 4.241 15 C -0.032 4.032 16 C -0.266 4.266 17 C 0.249 3.751 18 N -0.884 5.884 19 C -0.285 4.285 20 H 0.045 0.955 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.022 0.978 26 H 0.015 0.985 27 H 0.261 0.739 28 H 0.125 0.875 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.392 0.608 32 H 0.393 0.607 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.580 -11.770 7.965 14.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.332 5.332 3 C 0.002 3.998 4 C -0.029 4.029 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.531 5.531 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.164 3.836 14 C -0.264 4.264 15 C -0.051 4.051 16 C -0.291 4.291 17 C 0.144 3.856 18 N -0.423 5.423 19 C -0.313 4.313 20 H 0.063 0.937 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.040 0.960 26 H 0.034 0.966 27 H 0.070 0.930 28 H 0.143 0.857 29 H 0.132 0.868 30 H 0.125 0.875 31 H 0.220 0.780 32 H 0.220 0.780 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.663 -11.477 7.782 14.343 hybrid contribution 0.258 0.597 -0.281 0.708 sum -3.406 -10.880 7.501 13.647 Atomic orbital electron populations 1.21533 0.80842 1.01428 1.00893 1.46847 1.04595 1.03957 1.77847 1.21847 0.95149 0.81886 1.00891 1.19455 0.97111 0.96133 0.90208 1.21133 1.36281 1.06409 0.92396 0.92589 1.25001 0.95979 0.97623 0.95612 1.69979 1.46605 1.39230 0.97286 0.86591 0.80219 0.83676 0.77490 1.20596 1.21253 1.19854 1.17568 0.91131 0.85210 0.89723 1.20646 0.92295 0.98786 1.14723 1.20556 0.98731 0.91506 0.94325 1.20174 0.91812 0.97887 1.19200 1.17389 0.91114 0.85482 0.91565 1.42400 1.08515 1.05142 1.86260 1.19895 0.98623 0.90137 1.22606 0.93680 0.92286 0.91927 0.91678 0.92237 0.95967 0.96633 0.92972 0.85686 0.86751 0.87519 0.78046 0.77957 0.86837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.50 10.23 59.85 0.61 2.12 16 2 N -0.62 -11.85 3.01 -179.65 -0.54 -12.39 16 3 C 0.12 2.61 5.13 -4.04 -0.02 2.59 16 4 C 0.01 0.24 5.30 -27.88 -0.15 0.09 16 5 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -27.11 13.29 55.43 0.74 -26.38 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.27 5.06 6.55 -83.81 -0.55 4.51 16 14 C -0.24 -4.54 9.20 -39.34 -0.36 -4.90 16 15 C -0.03 -0.52 10.03 -39.64 -0.40 -0.92 16 16 C -0.27 -4.05 9.89 -39.34 -0.39 -4.44 16 17 C 0.25 3.72 6.75 -83.82 -0.57 3.15 16 18 N -0.88 -9.58 9.09 32.40 0.29 -9.29 16 19 C -0.28 -4.70 9.05 -39.19 -0.35 -5.05 16 20 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.06 0.78 6.19 -51.93 -0.32 0.46 16 22 H 0.06 0.89 7.89 -51.93 -0.41 0.48 16 23 H 0.06 1.35 6.20 -51.93 -0.32 1.03 16 24 H 0.06 1.19 7.89 -51.93 -0.41 0.78 16 25 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.13 2.49 6.14 -52.48 -0.32 2.17 16 29 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 30 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.39 3.56 8.84 -40.82 -0.36 3.20 16 32 H 0.39 3.42 8.84 -40.82 -0.36 3.06 16 33 H 0.11 1.68 6.14 -52.49 -0.32 1.35 16 LS Contribution 277.68 15.07 4.18 4.18 Total: -1.00 -31.56 277.68 -7.42 -38.98 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -4.48 Total: 4.57 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -2.59 Total: -16.28 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.49 Total: -48.06 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.56 -7.42 -38.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041023109.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.463 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds