Wall clock time and date at job start Mon Mar 30 2020 03:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00381 * 2 1 4 4 C 1.53000 * 109.46840 * 269.99975 * 3 2 1 5 5 C 1.50706 * 109.46735 * 180.02562 * 4 3 2 6 6 H 1.07996 * 119.99928 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99611 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00327 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99743 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46828 * 90.00241 * 9 7 5 11 11 H 1.48494 * 109.47178 * 209.99936 * 9 7 5 12 12 H 1.48500 * 109.47075 * 330.00183 * 9 7 5 13 13 C 1.39670 * 119.99656 * 179.97438 * 2 1 3 14 14 C 1.38998 * 120.03729 * 179.72945 * 13 2 1 15 15 C 1.38128 * 120.07429 * 179.70257 * 14 13 2 16 16 C 1.38177 * 120.14922 * 0.59441 * 15 14 13 17 17 C 1.38960 * 120.07198 * 359.68230 * 16 15 14 18 18 N 1.39664 * 120.03791 * 179.97438 * 17 16 15 19 19 C 1.38755 * 120.04042 * 0.02562 * 13 2 1 20 20 H 1.09000 * 109.46899 * 89.99956 * 1 2 3 21 21 H 1.08992 * 109.47334 * 209.99920 * 1 2 3 22 22 H 1.08994 * 109.46680 * 330.00544 * 1 2 3 23 23 H 1.09002 * 109.47391 * 149.99645 * 3 2 1 24 24 H 1.09001 * 109.46813 * 29.99701 * 3 2 1 25 25 H 1.09001 * 109.47194 * 299.99493 * 4 3 2 26 26 H 1.08992 * 109.47399 * 59.99666 * 4 3 2 27 27 H 0.97000 * 120.00354 * 180.02562 * 8 7 5 28 28 H 1.08009 * 119.96027 * 359.97438 * 14 13 2 29 29 H 1.08006 * 119.92967 * 180.27721 * 15 14 13 30 30 H 1.07998 * 119.97111 * 179.70084 * 16 15 14 31 31 H 0.97002 * 120.00127 * 180.02562 * 18 17 16 32 32 H 0.97002 * 120.00037 * 0.02562 * 18 17 16 33 33 H 1.08002 * 120.06981 * 359.97438 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2068 3.0150 -1.4425 6 1 3.4767 3.4827 -0.5072 7 6 3.5521 3.6117 -2.6366 8 7 3.2237 3.0420 -3.7755 9 14 4.4862 5.2293 -2.6366 10 1 5.9462 4.9578 -2.6359 11 1 4.1281 6.0077 -3.8494 12 1 4.1270 6.0084 -1.4245 13 6 2.1633 -1.2096 0.0005 14 6 3.5533 -1.2106 -0.0051 15 6 4.2446 -2.4064 0.0016 16 6 3.5576 -3.6053 0.0016 17 6 2.1680 -3.6115 0.0015 18 7 1.4743 -4.8237 0.0010 19 6 1.4703 -2.4117 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3632 0.8900 0.5137 23 1 3.1500 1.1383 0.5139 24 1 1.6085 2.0283 0.5138 25 1 3.0417 0.9506 -1.9563 26 1 1.5003 1.8406 -1.9564 27 1 3.4670 3.4615 -4.6156 28 1 4.0933 -0.2752 -0.0104 29 1 5.3247 -2.4044 0.0017 30 1 4.1011 -4.5385 0.0020 31 1 0.5043 -4.8274 0.0005 32 1 1.9625 -5.6619 0.0010 33 1 0.3903 -2.4137 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041023109.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:26 Heat of formation + Delta-G solvation = 4.157509 kcal Electronic energy + Delta-G solvation = -14457.853738 eV Core-core repulsion = 12096.117912 eV Total energy + Delta-G solvation = -2361.735826 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.47267 -37.82610 -35.30685 -34.68563 -32.36517 -30.33619 -29.51350 -27.52762 -25.77165 -23.35712 -22.76653 -21.18342 -18.70903 -18.28866 -17.60128 -16.63623 -16.53405 -15.93260 -15.84459 -15.30370 -14.52477 -14.33928 -14.28504 -14.04730 -13.76855 -13.33632 -12.86532 -12.83513 -12.56802 -12.23283 -12.05911 -11.93355 -11.59977 -11.44276 -11.27502 -10.56904 -10.32409 -8.55357 -8.21368 -7.92899 -6.33116 0.80292 0.98512 1.40725 1.42598 1.53587 2.32470 2.47766 3.13154 3.17333 3.20121 4.11492 4.20032 4.46017 4.46793 4.55341 4.63210 4.79750 4.82275 4.93019 4.93978 5.01016 5.06729 5.42036 5.48959 5.58092 5.62953 5.80110 5.88746 5.95996 6.16176 6.56584 6.64113 6.84651 6.86193 7.15650 7.36831 8.91833 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.041734 B = 0.006261 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.754594 B = 4471.297629 C = 4781.108104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.636 5.636 3 C 0.141 3.859 4 C 0.022 3.978 5 C -0.542 4.542 6 H 0.066 0.934 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.968 3.032 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.259 1.259 13 C 0.245 3.755 14 C -0.276 4.276 15 C -0.035 4.035 16 C -0.266 4.266 17 C 0.252 3.748 18 N -0.865 5.865 19 C -0.292 4.292 20 H 0.033 0.967 21 H 0.086 0.914 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.072 0.928 25 H -0.016 1.016 26 H -0.014 1.014 27 H 0.263 0.737 28 H 0.100 0.900 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.404 0.596 32 H 0.407 0.593 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.669 -12.695 9.050 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.345 5.345 3 C 0.018 3.982 4 C -0.016 4.016 5 C -0.580 4.580 6 H 0.085 0.915 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.183 1.183 13 C 0.141 3.859 14 C -0.300 4.300 15 C -0.055 4.055 16 C -0.291 4.291 17 C 0.146 3.854 18 N -0.405 5.405 19 C -0.320 4.320 20 H 0.052 0.948 21 H 0.104 0.896 22 H 0.093 0.907 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.002 0.998 26 H 0.004 0.996 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.233 0.767 32 H 0.237 0.763 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.777 -12.466 8.889 15.770 hybrid contribution 0.270 0.717 -0.636 0.996 sum -3.507 -11.749 8.253 14.780 Atomic orbital electron populations 1.21687 0.78960 1.03422 1.00767 1.46823 1.05756 1.03223 1.78679 1.21429 0.95975 0.83555 0.97245 1.19268 0.94589 0.94796 0.92989 1.21590 1.36313 1.07139 0.93001 0.91538 1.26006 0.96897 1.01732 0.95090 1.70131 1.48023 1.41237 0.98081 0.85401 0.78684 0.78675 0.77999 1.19829 1.20868 1.18298 1.17846 0.91340 0.85898 0.90808 1.20653 0.92855 0.98873 1.17606 1.20812 0.99819 0.91241 0.93611 1.20513 0.92225 0.98432 1.17902 1.17516 0.91369 0.86395 0.90154 1.42341 1.09262 1.04352 1.84576 1.20078 0.99515 0.89834 1.22549 0.94813 0.89593 0.90656 0.91718 0.90935 0.99768 0.99608 0.92825 0.88143 0.84988 0.84675 0.76693 0.76312 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.88 10.23 127.77 1.31 4.18 16 2 N -0.64 -24.49 3.01 -722.28 -2.17 -26.66 16 3 C 0.14 6.12 5.13 86.38 0.44 6.56 16 4 C 0.02 1.20 5.30 29.85 0.16 1.36 16 5 C -0.54 -31.18 9.11 25.60 0.23 -30.95 16 6 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 7 C 0.00 0.03 5.46 84.66 0.46 0.50 16 8 N -0.93 -58.41 13.29 21.45 0.28 -58.13 16 9 Si 0.97 44.62 29.54 68.60 2.03 46.64 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 13 C 0.25 9.30 6.55 38.20 0.25 9.55 16 14 C -0.28 -10.72 9.20 22.43 0.21 -10.52 16 15 C -0.04 -1.15 10.03 22.23 0.22 -0.92 16 16 C -0.27 -7.49 9.89 22.43 0.22 -7.27 16 17 C 0.25 6.94 6.75 38.20 0.26 7.19 16 18 N -0.87 -15.73 9.09 -51.42 -0.47 -16.20 16 19 C -0.29 -9.22 9.05 22.53 0.20 -9.02 16 20 H 0.03 1.08 8.14 -2.39 -0.02 1.07 16 21 H 0.09 2.12 6.19 -2.39 -0.01 2.10 16 22 H 0.07 2.07 7.89 -2.39 -0.02 2.05 16 23 H 0.06 2.79 6.20 -2.39 -0.01 2.78 16 24 H 0.07 2.92 7.89 -2.39 -0.02 2.90 16 25 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 26 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 27 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 28 H 0.10 4.28 6.14 -2.91 -0.02 4.26 16 29 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 30 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 31 H 0.40 5.87 8.84 -92.71 -0.82 5.05 16 32 H 0.41 5.48 8.84 -92.71 -0.82 4.66 16 33 H 0.13 3.55 6.14 -2.91 -0.02 3.53 16 Total: -1.00 -69.63 277.68 3.12 -66.51 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -0.52 Total: 17.18 kcal Atomic # 6 Polarization: -33.31 SS G_CDS: 3.97 Total: -29.34 kcal Atomic # 7 Polarization: -98.64 SS G_CDS: -2.35 Total: -100.99 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -69.63 3.12 -66.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041023109.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.666 kcal (2) G-P(sol) polarization free energy of solvation -69.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds