Wall clock time and date at job start Mon Mar 30 2020 03:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47157 * 2 1 4 4 C 1.46500 * 119.99569 * 269.99746 * 3 2 1 5 5 C 1.50704 * 109.47234 * 269.99874 * 4 3 2 6 6 H 1.08000 * 120.00026 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99692 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99650 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00388 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47202 * 90.00461 * 9 7 5 11 11 H 1.48501 * 109.47459 * 210.00352 * 9 7 5 12 12 H 1.48505 * 109.47233 * 330.00473 * 9 7 5 13 13 C 1.38992 * 120.00148 * 90.00159 * 3 2 1 14 14 C 1.39143 * 119.70430 * 4.99746 * 13 3 2 15 15 C 1.38305 * 119.09428 * 179.97438 * 14 13 3 16 16 C 1.38874 * 118.50806 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.33853 * 180.02562 * 16 15 14 18 18 C 1.38026 * 119.32971 * 0.02562 * 16 15 14 19 19 N 1.31970 * 120.85661 * 359.97438 * 18 16 15 20 20 H 1.08993 * 109.47456 * 300.00455 * 1 2 3 21 21 H 1.09007 * 109.46716 * 60.00376 * 1 2 3 22 22 H 1.08996 * 109.47091 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47299 * 240.00106 * 2 1 3 24 24 H 1.08999 * 109.47438 * 119.99956 * 2 1 3 25 25 H 1.08998 * 109.47662 * 30.00167 * 4 3 2 26 26 H 1.09005 * 109.46388 * 150.00115 * 4 3 2 27 27 H 0.97003 * 119.99449 * 179.97438 * 8 7 5 28 28 H 1.07994 * 120.45260 * 0.25360 * 14 13 3 29 29 H 1.08001 * 120.74349 * 180.02562 * 15 14 13 30 30 H 1.09007 * 109.46936 * 89.99993 * 17 16 15 31 31 H 1.08993 * 109.47747 * 209.99861 * 17 16 15 32 32 H 1.08998 * 109.46982 * 330.00531 * 17 16 15 33 33 H 1.08004 * 119.57403 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0962 7 6 4.1494 2.3904 -2.8775 8 7 5.3914 2.1833 -3.2574 9 14 3.0131 3.4357 -3.9288 10 1 3.1157 4.8560 -3.5072 11 1 3.4067 3.3134 -5.3555 12 1 1.6135 2.9691 -3.7597 13 6 2.2500 2.0365 1.2037 14 6 2.1167 1.3434 2.4028 15 6 2.3507 2.0076 3.5931 16 6 2.7112 3.3479 3.5445 17 6 2.9765 4.1114 4.8164 18 6 2.8240 3.9736 2.3194 19 7 2.5946 3.3148 1.1992 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.5817 1.6877 -2.0285 26 1 2.0955 3.1410 -1.1384 27 1 5.7174 2.5737 -4.0834 28 1 1.8386 0.2999 2.4038 29 1 2.2554 1.4954 4.5392 30 1 4.0315 4.0273 5.0773 31 1 2.7210 5.1608 4.6703 32 1 2.3691 3.6982 5.6216 33 1 3.1037 5.0160 2.2770 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454627.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:58 Heat of formation + Delta-G solvation = 39.379072 kcal Electronic energy + Delta-G solvation = -14763.473811 eV Core-core repulsion = 12403.265307 eV Total energy + Delta-G solvation = -2360.208504 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.71600 -36.51629 -32.80024 -32.69681 -31.04470 -30.31312 -27.74520 -25.56617 -23.53665 -22.42917 -21.72219 -19.87549 -16.89000 -16.75539 -16.06765 -14.72517 -14.45765 -14.27786 -14.06347 -13.65297 -13.05567 -12.85467 -12.55990 -12.32544 -12.24505 -12.07512 -11.80398 -11.45495 -11.12216 -10.93732 -10.53932 -10.43193 -10.19527 -9.54324 -9.23121 -8.92742 -8.63352 -8.51611 -6.66037 -6.04208 -4.01732 1.86268 2.02270 3.31703 3.37609 3.39633 3.78522 4.43404 4.51251 5.07316 5.23573 5.28595 5.37850 5.41104 5.51117 5.61850 5.65593 5.76318 5.83293 5.90824 6.05315 6.14420 6.23733 6.30411 6.48577 6.52113 6.74524 6.85569 6.98438 7.25249 7.67340 7.81382 8.20955 8.57856 8.92570 9.01679 9.56804 11.09442 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.026922 B = 0.009065 C = 0.007581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.777056 B = 3087.991848 C = 3692.501495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.121 3.879 3 N -0.585 5.585 4 C 0.224 3.776 5 C -0.523 4.523 6 H 0.072 0.928 7 C 0.071 3.929 8 N -0.901 5.901 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.419 3.581 14 C -0.255 4.255 15 C -0.036 4.036 16 C -0.232 4.232 17 C -0.090 4.090 18 C 0.154 3.846 19 N -0.527 5.527 20 H 0.052 0.948 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.023 0.977 26 H 0.041 0.959 27 H 0.263 0.737 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.651 -0.769 11.771 14.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.293 5.293 4 C 0.103 3.897 5 C -0.562 4.562 6 H 0.090 0.910 7 C -0.131 4.131 8 N -0.540 5.540 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.192 1.192 13 C 0.183 3.817 14 C -0.281 4.281 15 C -0.061 4.061 16 C -0.238 4.238 17 C -0.148 4.148 18 C -0.006 4.006 19 N -0.242 5.242 20 H 0.071 0.929 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.101 0.899 24 H 0.086 0.914 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.488 -0.433 10.573 13.565 hybrid contribution -0.397 0.090 0.098 0.418 sum -8.885 -0.343 10.671 13.890 Atomic orbital electron populations 1.22231 0.97034 1.01314 1.02193 1.21351 0.93106 0.83012 1.02806 1.46737 1.66579 1.12177 1.03812 1.19624 0.96751 0.93498 0.79789 1.21397 0.95507 1.32404 1.06897 0.91008 1.24852 0.94950 0.95924 0.97354 1.69912 1.15203 1.45276 1.23580 0.86849 0.81503 0.81607 0.79689 1.19919 1.21236 1.19169 1.18387 0.88875 0.88329 0.86117 1.21359 1.13570 1.01018 0.92161 1.20999 0.94474 0.93448 0.97223 1.20402 1.11173 0.95814 0.96410 1.20451 1.01039 0.99101 0.94201 1.22274 0.92899 0.98884 0.86591 1.67307 1.18306 1.07919 1.30715 0.92897 0.92428 0.92151 0.89901 0.91438 0.95882 0.94083 0.92694 0.85710 0.86143 0.92327 0.92259 0.92588 0.83803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 10.24 37.16 0.38 -2.01 16 2 C 0.12 2.07 5.97 -4.04 -0.02 2.04 16 3 N -0.58 -12.58 2.57 -175.20 -0.45 -13.03 16 4 C 0.22 5.59 4.29 -5.19 -0.02 5.56 16 5 C -0.52 -15.23 9.94 -34.44 -0.34 -15.58 16 6 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 9 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 13 C 0.42 8.79 7.37 -155.03 -1.14 7.65 16 14 C -0.26 -4.41 9.27 -39.22 -0.36 -4.77 16 15 C -0.04 -0.54 9.85 -39.32 -0.39 -0.93 16 16 C -0.23 -3.57 5.90 -104.46 -0.62 -4.18 16 17 C -0.09 -1.03 10.03 36.01 0.36 -0.66 16 18 C 0.15 2.76 10.85 -17.57 -0.19 2.56 16 19 N -0.53 -11.56 9.08 -12.44 -0.11 -11.67 16 20 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.08 1.46 8.07 -51.93 -0.42 1.04 16 24 H 0.07 1.02 5.97 -51.93 -0.31 0.71 16 25 H 0.02 0.56 7.13 -51.93 -0.37 0.19 16 26 H 0.04 1.07 6.73 -51.93 -0.35 0.72 16 27 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 28 H 0.13 1.87 6.02 -52.49 -0.32 1.56 16 29 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 30 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.14 2.20 8.06 -52.48 -0.42 1.78 16 LS Contribution 278.17 15.07 4.19 4.19 Total: -1.00 -32.74 278.17 -7.44 -40.18 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -4.73 Total: -1.20 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -2.44 Total: -8.32 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.21 Total: -52.05 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.74 -7.44 -40.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454627.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.558 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds