Wall clock time and date at job start Mon Mar 30 2020 03:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47157 * 2 1 4 4 C 1.46500 * 119.99569 * 269.99746 * 3 2 1 5 5 C 1.50704 * 109.47234 * 269.99874 * 4 3 2 6 6 H 1.08000 * 120.00026 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99692 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99650 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00388 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47202 * 90.00461 * 9 7 5 11 11 H 1.48501 * 109.47459 * 210.00352 * 9 7 5 12 12 H 1.48505 * 109.47233 * 330.00473 * 9 7 5 13 13 C 1.38992 * 120.00148 * 90.00159 * 3 2 1 14 14 C 1.39143 * 119.70430 * 4.99746 * 13 3 2 15 15 C 1.38305 * 119.09428 * 179.97438 * 14 13 3 16 16 C 1.38874 * 118.50806 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.33853 * 180.02562 * 16 15 14 18 18 C 1.38026 * 119.32971 * 0.02562 * 16 15 14 19 19 N 1.31970 * 120.85661 * 359.97438 * 18 16 15 20 20 H 1.08993 * 109.47456 * 300.00455 * 1 2 3 21 21 H 1.09007 * 109.46716 * 60.00376 * 1 2 3 22 22 H 1.08996 * 109.47091 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47299 * 240.00106 * 2 1 3 24 24 H 1.08999 * 109.47438 * 119.99956 * 2 1 3 25 25 H 1.08998 * 109.47662 * 30.00167 * 4 3 2 26 26 H 1.09005 * 109.46388 * 150.00115 * 4 3 2 27 27 H 0.97003 * 119.99449 * 179.97438 * 8 7 5 28 28 H 1.07994 * 120.45260 * 0.25360 * 14 13 3 29 29 H 1.08001 * 120.74349 * 180.02562 * 15 14 13 30 30 H 1.09007 * 109.46936 * 89.99993 * 17 16 15 31 31 H 1.08993 * 109.47747 * 209.99861 * 17 16 15 32 32 H 1.08998 * 109.46982 * 330.00531 * 17 16 15 33 33 H 1.08004 * 119.57403 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0962 7 6 4.1494 2.3904 -2.8775 8 7 5.3914 2.1833 -3.2574 9 14 3.0131 3.4357 -3.9288 10 1 3.1157 4.8560 -3.5072 11 1 3.4067 3.3134 -5.3555 12 1 1.6135 2.9691 -3.7597 13 6 2.2500 2.0365 1.2037 14 6 2.1167 1.3434 2.4028 15 6 2.3507 2.0076 3.5931 16 6 2.7112 3.3479 3.5445 17 6 2.9765 4.1114 4.8164 18 6 2.8240 3.9736 2.3194 19 7 2.5946 3.3148 1.1992 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.5817 1.6877 -2.0285 26 1 2.0955 3.1410 -1.1384 27 1 5.7174 2.5737 -4.0834 28 1 1.8386 0.2999 2.4038 29 1 2.2554 1.4954 4.5392 30 1 4.0315 4.0273 5.0773 31 1 2.7210 5.1608 4.6703 32 1 2.3691 3.6982 5.6216 33 1 3.1037 5.0160 2.2770 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454627.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:58 Heat of formation + Delta-G solvation = 19.142714 kcal Electronic energy + Delta-G solvation = -14764.351326 eV Core-core repulsion = 12403.265307 eV Total energy + Delta-G solvation = -2361.086019 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.10117 -37.99392 -34.85453 -34.07497 -32.41860 -31.84865 -29.40654 -26.89795 -25.15443 -23.72099 -23.34246 -21.34003 -19.05904 -18.26989 -17.56124 -16.30095 -15.96356 -15.92374 -15.34796 -15.05990 -14.60342 -14.33751 -14.03326 -13.77018 -13.53567 -13.26604 -13.13420 -13.08101 -12.59320 -12.42881 -12.27800 -12.02702 -11.82080 -11.72734 -10.81378 -10.55903 -10.46389 -10.03318 -8.32944 -8.14803 -6.35635 0.52141 0.70991 1.32189 1.35623 1.44859 2.31095 2.32874 3.02434 3.13823 3.74832 4.07536 4.12917 4.28178 4.37015 4.37430 4.41361 4.57263 4.79198 4.82667 4.91086 4.97800 4.98752 5.03985 5.11413 5.24170 5.30192 5.35088 5.50691 5.58583 5.91996 6.08218 6.42234 6.63816 6.72574 7.27362 7.53256 8.85198 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.026922 B = 0.009065 C = 0.007581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.777056 B = 3087.991848 C = 3692.501495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.116 3.884 3 N -0.604 5.604 4 C 0.241 3.759 5 C -0.526 4.526 6 H 0.021 0.979 7 C 0.010 3.990 8 N -0.949 5.949 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.277 1.277 12 H -0.245 1.245 13 C 0.383 3.617 14 C -0.253 4.253 15 C -0.035 4.035 16 C -0.218 4.218 17 C -0.088 4.088 18 C 0.125 3.875 19 N -0.577 5.577 20 H 0.054 0.946 21 H 0.044 0.956 22 H 0.092 0.908 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.032 0.968 26 H 0.027 0.973 27 H 0.267 0.733 28 H 0.147 0.853 29 H 0.163 0.837 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.528 -0.650 13.637 17.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.006 4.006 3 N -0.315 5.315 4 C 0.118 3.882 5 C -0.565 4.565 6 H 0.039 0.961 7 C -0.187 4.187 8 N -0.590 5.590 9 Si 0.773 3.227 10 H -0.197 1.197 11 H -0.202 1.202 12 H -0.168 1.168 13 C 0.149 3.851 14 C -0.278 4.278 15 C -0.060 4.060 16 C -0.223 4.223 17 C -0.146 4.146 18 C -0.033 4.033 19 N -0.294 5.294 20 H 0.073 0.927 21 H 0.063 0.937 22 H 0.111 0.889 23 H 0.085 0.915 24 H 0.104 0.896 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.164 0.836 29 H 0.181 0.819 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.379 -0.320 12.497 16.248 hybrid contribution 0.288 0.043 -0.288 0.409 sum -10.091 -0.277 12.209 15.842 Atomic orbital electron populations 1.22118 0.94489 1.03194 1.01631 1.21559 0.95104 0.81050 1.02930 1.46717 1.68297 1.13580 1.02879 1.19156 0.93858 0.93209 0.81980 1.21613 0.97183 1.31380 1.06359 0.96072 1.25832 0.96653 0.97337 0.98901 1.70070 1.17500 1.46932 1.24513 0.85687 0.80135 0.79247 0.77666 1.19685 1.20193 1.16844 1.18774 0.90669 0.88700 0.87002 1.21632 1.12712 1.01971 0.91518 1.21530 0.92888 0.93444 0.98150 1.20888 1.08130 0.96232 0.97030 1.20535 1.02088 0.99390 0.92540 1.22695 0.93835 0.99796 0.86971 1.67184 1.19841 1.09184 1.33208 0.92671 0.93697 0.88935 0.91477 0.89616 0.95053 0.95480 0.92412 0.83570 0.81915 0.91373 0.91095 0.90215 0.82402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 10.24 71.98 0.74 -3.39 16 2 C 0.12 3.92 5.97 86.38 0.52 4.44 16 3 N -0.60 -26.43 2.57 -708.22 -1.82 -28.25 16 4 C 0.24 12.27 4.29 85.63 0.37 12.64 16 5 C -0.53 -32.01 9.94 25.60 0.25 -31.75 16 6 H 0.02 1.45 8.06 -2.91 -0.02 1.42 16 7 C 0.01 0.61 5.47 84.65 0.46 1.07 16 8 N -0.95 -61.41 13.96 21.45 0.30 -61.11 16 9 Si 0.95 45.83 27.47 68.60 1.88 47.71 16 10 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.24 -10.86 6.54 99.48 0.65 -10.21 16 13 C 0.38 16.16 7.37 133.07 0.98 17.14 16 14 C -0.25 -8.31 9.27 22.50 0.21 -8.10 16 15 C -0.03 -0.94 9.85 22.44 0.22 -0.72 16 16 C -0.22 -6.13 5.90 -19.76 -0.12 -6.25 16 17 C -0.09 -1.66 10.03 71.24 0.71 -0.95 16 18 C 0.13 4.43 10.85 84.62 0.92 5.35 16 19 N -0.58 -25.81 9.08 -193.26 -1.75 -27.57 16 20 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 22 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 24 H 0.09 2.50 5.97 -2.39 -0.01 2.48 16 25 H 0.03 1.53 7.13 -2.39 -0.02 1.51 16 26 H 0.03 1.45 6.73 -2.38 -0.02 1.43 16 27 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 28 H 0.15 4.01 6.02 -2.91 -0.02 3.99 16 29 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 30 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 32 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 33 H 0.16 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -74.87 278.17 4.90 -69.97 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 1.02 Total: 9.75 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 5.26 Total: -10.51 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -3.28 Total: -116.92 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.88 Total: 47.71 kcal Total: -74.87 4.90 -69.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454627.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.116 kcal (2) G-P(sol) polarization free energy of solvation -74.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds