Wall clock time and date at job start Mon Mar 30 2020 03:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47173 * 2 1 4 4 C 1.36940 * 120.00560 * 270.33226 * 3 2 1 5 5 H 1.08004 * 119.99870 * 326.14942 * 4 3 2 6 6 C 1.38807 * 119.99995 * 146.14127 * 4 3 2 7 7 N 1.31621 * 120.00476 * 336.89976 * 6 4 3 8 8 Si 1.86801 * 119.99798 * 156.89756 * 6 4 3 9 9 H 1.48501 * 109.47033 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47090 * 120.00224 * 8 6 4 11 11 H 1.48493 * 109.47423 * 240.00081 * 8 6 4 12 12 C 1.46506 * 119.99848 * 90.32928 * 3 2 1 13 13 C 1.52996 * 109.46907 * 90.00170 * 12 3 2 14 14 C 1.50700 * 109.47049 * 180.02562 * 13 12 3 15 15 C 1.38650 * 120.79015 * 90.00159 * 14 13 12 16 16 C 1.38203 * 119.15861 * 180.02562 * 15 14 13 17 17 N 1.31870 * 120.76964 * 0.25864 * 16 15 14 18 18 C 1.31873 * 121.72381 * 359.46827 * 17 16 15 19 19 C 1.38202 * 120.76119 * 0.53068 * 18 17 16 20 20 H 1.08998 * 109.47428 * 299.98996 * 1 2 3 21 21 H 1.08996 * 109.47555 * 60.00089 * 1 2 3 22 22 H 1.09009 * 109.46853 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47138 * 240.00881 * 2 1 3 24 24 H 1.09000 * 109.47783 * 120.00631 * 2 1 3 25 25 H 0.96998 * 119.99990 * 179.97438 * 7 6 4 26 26 H 1.08998 * 109.46939 * 330.00516 * 12 3 2 27 27 H 1.09000 * 109.46986 * 210.00333 * 12 3 2 28 28 H 1.08998 * 109.47038 * 60.00407 * 13 12 3 29 29 H 1.09000 * 109.47431 * 299.99891 * 13 12 3 30 30 H 1.08000 * 120.41929 * 0.04189 * 15 14 13 31 31 H 1.08008 * 119.61675 * 179.97438 * 16 15 14 32 32 H 1.08000 * 119.62006 * 180.27105 * 18 17 16 33 33 H 1.08004 * 120.41814 * 179.76497 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2401 2.0291 -1.1858 5 1 2.5924 1.4775 -2.0449 6 6 2.0119 3.3948 -1.2838 7 7 1.1855 3.9857 -0.4470 8 14 2.8780 4.3941 -2.6032 9 1 3.7474 3.5006 -3.4100 10 1 1.8671 5.0298 -3.4861 11 1 3.7073 5.4463 -1.9628 12 6 2.2693 2.0693 1.2688 13 6 3.7167 1.8281 1.7021 14 6 3.9748 2.5354 3.0075 15 6 3.7558 1.8946 4.2174 16 6 4.0032 2.5753 5.3944 17 7 4.4371 3.8205 5.3752 18 6 4.6612 4.4593 4.2435 19 6 4.4363 3.8427 3.0272 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0278 -0.0005 23 1 1.8933 -0.5137 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 1.0264 4.9401 -0.5153 26 1 1.5927 1.6837 2.0313 27 1 2.1016 3.1388 1.1414 28 1 4.3933 2.2137 0.9395 29 1 3.8844 0.7586 1.8294 30 1 3.3969 0.8762 4.2397 31 1 3.8348 2.0834 6.3411 32 1 5.0207 5.4774 4.2674 33 1 4.6182 4.3724 2.1037 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045061623.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:29 Heat of formation + Delta-G solvation = 42.436259 kcal Electronic energy + Delta-G solvation = -14737.745610 eV Core-core repulsion = 12377.669675 eV Total energy + Delta-G solvation = -2360.075935 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.75609 -36.28273 -33.53691 -31.83489 -30.84703 -29.66097 -27.68189 -24.45153 -23.09682 -23.00677 -21.17057 -19.80698 -16.69878 -16.18158 -15.95303 -15.23374 -14.81367 -14.03223 -13.91562 -13.49963 -13.38031 -12.78707 -12.39527 -12.21727 -11.84602 -11.37814 -11.15160 -11.05175 -10.97054 -10.71309 -10.29791 -10.04100 -9.80551 -9.64297 -9.15948 -9.03213 -8.82363 -8.53260 -6.65634 -5.81725 -3.35654 1.47205 1.66026 3.31960 3.41645 3.43977 4.16236 4.45230 4.73664 5.10141 5.13607 5.30774 5.48608 5.54142 5.63255 5.93386 5.97285 6.08740 6.18197 6.32276 6.38370 6.47905 6.55364 6.58722 6.67550 6.77980 6.95055 7.04685 7.16052 7.23810 7.68724 7.79608 8.26796 8.46348 9.14544 9.78727 10.34955 11.17894 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.024346 B = 0.009334 C = 0.007292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.786624 B = 2998.928380 C = 3839.163578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 N -0.585 5.585 4 C -0.257 4.257 5 H 0.063 0.937 6 C 0.008 3.992 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.276 1.276 10 H -0.290 1.290 11 H -0.287 1.287 12 C 0.151 3.849 13 C -0.105 4.105 14 C -0.014 4.014 15 C -0.178 4.178 16 C 0.091 3.909 17 N -0.503 5.503 18 C 0.093 3.907 19 C -0.168 4.168 20 H 0.042 0.958 21 H 0.054 0.946 22 H 0.030 0.970 23 H 0.042 0.958 24 H 0.032 0.968 25 H 0.254 0.746 26 H 0.023 0.977 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.129 0.871 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.446 -3.249 6.656 8.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.387 4.387 5 H 0.081 0.919 6 C -0.192 4.192 7 N -0.528 5.528 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.217 1.217 11 H -0.214 1.214 12 C 0.024 3.976 13 C -0.145 4.145 14 C -0.023 4.023 15 C -0.198 4.198 16 C -0.066 4.066 17 N -0.213 5.213 18 C -0.063 4.063 19 C -0.188 4.188 20 H 0.061 0.939 21 H 0.073 0.927 22 H 0.049 0.951 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.041 0.959 27 H 0.120 0.880 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.147 0.853 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.524 -2.670 7.423 9.094 hybrid contribution 0.138 0.193 -1.466 1.485 sum 4.662 -2.477 5.956 7.959 Atomic orbital electron populations 1.22279 0.99712 0.98363 1.01900 1.20883 0.92003 0.87561 0.98111 1.43921 1.74196 1.09990 1.02352 1.19127 1.38000 0.91174 0.90391 0.91924 1.25081 0.97406 0.98561 0.98103 1.69989 1.33366 1.10199 1.39248 0.86375 0.79547 0.80269 0.81543 1.20096 1.21676 1.21395 1.20930 0.88612 1.02241 0.85803 1.21445 1.03257 0.98329 0.91464 1.20637 0.91479 0.93898 0.96279 1.22027 1.03053 1.01639 0.93073 1.22611 0.95484 0.90636 0.97820 1.67607 1.13318 1.09584 1.30760 1.22648 0.96310 0.99504 0.87840 1.22122 1.01344 0.95709 0.99672 0.93864 0.92686 0.95082 0.93999 0.94915 0.93584 0.95863 0.87963 0.90787 0.92409 0.85306 0.83434 0.83321 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 10.24 37.16 0.38 -2.86 16 2 C 0.14 2.92 6.39 -4.05 -0.03 2.89 16 3 N -0.58 -14.15 2.45 -173.24 -0.42 -14.58 16 4 C -0.26 -6.83 9.48 -15.06 -0.14 -6.98 16 5 H 0.06 1.67 7.93 -52.48 -0.42 1.25 16 6 C 0.01 0.23 4.95 -17.43 -0.09 0.14 16 7 N -0.89 -24.89 11.31 55.49 0.63 -24.27 16 8 Si 0.89 21.03 29.61 -169.99 -5.03 16.00 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.15 3.44 5.28 -4.04 -0.02 3.42 16 13 C -0.11 -2.02 5.72 -27.88 -0.16 -2.18 16 14 C -0.01 -0.25 5.17 -104.31 -0.54 -0.78 16 15 C -0.18 -2.73 9.82 -39.44 -0.39 -3.12 16 16 C 0.09 1.34 11.18 -17.55 -0.20 1.14 16 17 N -0.50 -8.16 10.36 -13.25 -0.14 -8.30 16 18 C 0.09 1.45 11.18 -17.55 -0.20 1.26 16 19 C -0.17 -2.83 9.82 -39.44 -0.39 -3.22 16 20 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 21 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 22 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 23 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 24 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 25 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.02 0.51 8.07 -51.93 -0.42 0.10 16 27 H 0.10 2.67 5.31 -51.93 -0.28 2.39 16 28 H 0.07 1.51 8.10 -51.93 -0.42 1.09 16 29 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 30 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.15 1.69 8.06 -52.48 -0.42 1.27 16 32 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 33 H 0.13 2.19 8.06 -52.48 -0.42 1.77 16 LS Contribution 282.88 15.07 4.26 4.26 Total: -1.00 -28.91 282.88 -7.35 -36.26 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.88 Total: 0.91 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.76 Total: -10.29 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.07 Total: -47.14 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.91 -7.35 -36.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045061623.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.695 kcal (2) G-P(sol) polarization free energy of solvation -28.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds