Wall clock time and date at job start Mon Mar 30 2020 02:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47143 * 2 1 4 4 N 1.46498 * 109.46773 * 180.02562 * 3 2 1 5 5 C 1.36938 * 120.00046 * 269.48202 * 4 3 2 6 6 H 1.08007 * 119.99629 * 325.93271 * 5 4 3 7 7 C 1.38808 * 119.99944 * 145.92625 * 5 4 3 8 8 N 1.31620 * 120.00252 * 336.75364 * 7 5 4 9 9 Si 1.86804 * 119.99587 * 156.75173 * 7 5 4 10 10 H 1.48499 * 109.47198 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.46963 * 120.00606 * 9 7 5 12 12 H 1.48501 * 109.46955 * 240.00146 * 9 7 5 13 13 C 1.46505 * 120.00047 * 89.49214 * 4 3 2 14 14 C 1.50695 * 109.47126 * 89.99298 * 13 4 3 15 15 C 1.38670 * 120.41887 * 269.71945 * 14 13 4 16 16 C 1.38630 * 118.41804 * 179.78855 * 15 14 13 17 17 C 1.38225 * 119.16021 * 0.50846 * 16 15 14 18 18 N 1.31854 * 120.76686 * 359.73283 * 17 16 15 19 19 C 1.31886 * 121.72307 * 359.97438 * 18 17 16 20 20 H 1.08997 * 109.46625 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47206 * 300.00032 * 1 2 3 22 22 H 1.09001 * 109.46727 * 60.00275 * 1 2 3 23 23 H 1.08996 * 109.47206 * 239.99967 * 2 1 3 24 24 H 1.09001 * 109.46727 * 119.99725 * 2 1 3 25 25 H 1.09006 * 109.46501 * 299.99895 * 3 2 1 26 26 H 1.08996 * 109.47096 * 59.99900 * 3 2 1 27 27 H 0.96996 * 119.99794 * 179.97438 * 8 7 5 28 28 H 1.08995 * 109.46474 * 209.99433 * 13 4 3 29 29 H 1.09000 * 109.46719 * 329.98770 * 13 4 3 30 30 H 1.07997 * 120.79300 * 0.02562 * 15 14 13 31 31 H 1.08002 * 120.41826 * 180.21920 * 16 15 14 32 32 H 1.08002 * 119.61581 * 179.74921 * 17 16 15 33 33 H 1.08002 * 119.61684 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1903 1.4529 1.1850 6 1 3.7896 1.9845 2.0355 7 6 5.3996 0.7803 1.2936 8 7 5.6764 -0.2124 0.4749 9 14 6.6342 1.2841 2.6019 10 1 6.0868 2.4185 3.3884 11 1 6.8939 0.1351 3.5060 12 1 7.9032 1.6988 1.9514 13 6 4.2371 1.4313 -1.2696 14 6 4.4880 2.8482 -1.7172 15 6 3.5718 3.5011 -2.5280 16 6 3.8421 4.8056 -2.9114 17 6 5.0127 5.4042 -2.4847 18 7 5.8637 4.7510 -1.7181 19 6 5.6365 3.5114 -1.3293 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 -0.8901 26 1 1.6767 1.9564 0.8899 27 1 6.5217 -0.6821 0.5506 28 1 5.1895 0.9187 -1.1351 29 1 3.6477 0.9107 -2.0244 30 1 2.6673 3.0065 -2.8498 31 1 3.1492 5.3457 -3.5395 32 1 5.2327 6.4188 -2.7824 33 1 6.3568 3.0086 -0.7010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045092625.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:30 Heat of formation + Delta-G solvation = 42.317628 kcal Electronic energy + Delta-G solvation = -14954.305626 eV Core-core repulsion = 12594.224547 eV Total energy + Delta-G solvation = -2360.081079 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.44308 -36.22877 -33.08883 -32.13716 -31.12560 -30.07513 -25.99672 -25.58592 -22.83763 -22.48908 -21.15014 -19.87263 -16.90905 -16.36304 -15.63106 -14.86942 -14.40933 -14.27900 -13.93116 -13.40020 -13.00860 -12.81509 -12.54256 -12.43559 -11.69072 -11.40488 -11.14277 -11.02268 -10.79168 -10.57654 -10.33995 -10.04957 -9.99908 -9.72087 -9.17707 -8.88024 -8.53953 -8.24761 -6.71473 -5.87667 -3.39107 1.78635 1.92645 3.33494 3.43565 3.46965 4.39666 4.50942 5.06636 5.24489 5.33916 5.48761 5.57398 5.71501 5.71870 5.80437 5.86959 6.10340 6.16971 6.24290 6.41585 6.48366 6.56412 6.61781 6.65638 6.77982 7.01276 7.07749 7.21842 7.38186 7.58936 7.76501 8.41468 8.62177 9.08919 9.72552 10.28648 11.12995 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.017213 B = 0.013630 C = 0.008343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.272351 B = 2053.871852 C = 3355.462662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.149 3.851 4 N -0.576 5.576 5 C -0.253 4.253 6 H 0.062 0.938 7 C 0.010 3.990 8 N -0.883 5.883 9 Si 0.890 3.110 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.284 1.284 13 C 0.173 3.827 14 C -0.117 4.117 15 C -0.085 4.085 16 C -0.181 4.181 17 C 0.067 3.933 18 N -0.493 5.493 19 C 0.112 3.888 20 H 0.043 0.957 21 H 0.047 0.953 22 H 0.044 0.956 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.032 0.968 26 H 0.042 0.958 27 H 0.256 0.744 28 H 0.111 0.889 29 H 0.036 0.964 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.142 0.858 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.226 4.445 -5.333 8.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.023 3.977 4 N -0.294 5.294 5 C -0.383 4.383 6 H 0.080 0.920 7 C -0.190 4.190 8 N -0.525 5.525 9 Si 0.719 3.281 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.211 1.211 13 C 0.046 3.954 14 C -0.122 4.122 15 C -0.112 4.112 16 C -0.201 4.201 17 C -0.090 4.090 18 N -0.201 5.201 19 C -0.046 4.046 20 H 0.062 0.938 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.128 0.872 29 H 0.054 0.946 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.159 0.841 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.329 4.729 -5.033 8.151 hybrid contribution -0.196 -0.161 0.387 0.462 sum -4.525 4.568 -4.646 7.933 Atomic orbital electron populations 1.21758 0.97754 1.00358 1.00672 1.22076 0.93041 1.00681 1.02171 1.20943 0.85002 0.93533 0.98236 1.43818 0.99431 1.84404 1.01785 1.19115 1.03072 1.25667 0.90442 0.91988 1.25050 1.00622 0.95123 0.98177 1.69980 1.23727 1.19085 1.39753 0.86420 0.81751 0.78327 0.81583 1.20020 1.21605 1.21060 1.20030 1.01121 0.87750 0.86450 1.22267 0.93751 1.02068 0.94127 1.21470 0.98729 0.94255 0.96718 1.21967 0.99074 0.96332 1.02727 1.22470 0.91215 0.99436 0.95881 1.67626 1.32073 1.09430 1.11011 1.22687 0.96180 0.89659 0.96046 0.93821 0.93420 0.93703 0.93012 0.91787 0.94996 0.93963 0.93400 0.87190 0.94592 0.86028 0.86089 0.84079 0.83140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 37.16 0.37 -1.85 16 2 C -0.14 -2.67 6.26 -26.73 -0.17 -2.83 16 3 C 0.15 3.04 5.67 -4.04 -0.02 3.02 16 4 N -0.58 -13.69 2.43 -174.61 -0.42 -14.12 16 5 C -0.25 -6.67 9.48 -15.06 -0.14 -6.81 16 6 H 0.06 1.67 7.93 -52.48 -0.42 1.25 16 7 C 0.01 0.28 4.94 -17.43 -0.09 0.19 16 8 N -0.88 -24.14 11.34 55.49 0.63 -23.51 16 9 Si 0.89 21.10 29.61 -169.99 -5.03 16.07 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.17 3.90 5.45 -5.19 -0.03 3.87 16 14 C -0.12 -2.40 5.48 -104.48 -0.57 -2.97 16 15 C -0.08 -1.49 9.86 -39.28 -0.39 -1.87 16 16 C -0.18 -2.83 10.11 -39.44 -0.40 -3.23 16 17 C 0.07 1.13 11.18 -17.55 -0.20 0.93 16 18 N -0.49 -9.86 10.36 -13.25 -0.14 -10.00 16 19 C 0.11 2.38 10.86 -17.55 -0.19 2.19 16 20 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 25 H 0.03 0.60 8.08 -51.93 -0.42 0.18 16 26 H 0.04 0.87 8.04 -51.93 -0.42 0.45 16 27 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.11 2.79 5.28 -51.93 -0.27 2.51 16 29 H 0.04 0.76 8.02 -51.93 -0.42 0.34 16 30 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 31 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.15 3.37 8.06 -52.49 -0.42 2.95 16 LS Contribution 282.88 15.07 4.26 4.26 Total: -1.00 -27.96 282.88 -7.41 -35.37 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.88 Total: 1.29 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -1.82 Total: -9.37 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.07 Total: -47.63 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.96 -7.41 -35.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092625.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.687 kcal (2) G-P(sol) polarization free energy of solvation -27.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds