Wall clock time and date at job start Mon Mar 30 2020 02:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47143 * 2 1 4 4 N 1.46498 * 109.46773 * 180.02562 * 3 2 1 5 5 C 1.36938 * 120.00046 * 269.48202 * 4 3 2 6 6 H 1.08007 * 119.99629 * 325.93271 * 5 4 3 7 7 C 1.38808 * 119.99944 * 145.92625 * 5 4 3 8 8 N 1.31620 * 120.00252 * 336.75364 * 7 5 4 9 9 Si 1.86804 * 119.99587 * 156.75173 * 7 5 4 10 10 H 1.48499 * 109.47198 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.46963 * 120.00606 * 9 7 5 12 12 H 1.48501 * 109.46955 * 240.00146 * 9 7 5 13 13 C 1.46505 * 120.00047 * 89.49214 * 4 3 2 14 14 C 1.50695 * 109.47126 * 89.99298 * 13 4 3 15 15 C 1.38670 * 120.41887 * 269.71945 * 14 13 4 16 16 C 1.38630 * 118.41804 * 179.78855 * 15 14 13 17 17 C 1.38225 * 119.16021 * 0.50846 * 16 15 14 18 18 N 1.31854 * 120.76686 * 359.73283 * 17 16 15 19 19 C 1.31886 * 121.72307 * 359.97438 * 18 17 16 20 20 H 1.08997 * 109.46625 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47206 * 300.00032 * 1 2 3 22 22 H 1.09001 * 109.46727 * 60.00275 * 1 2 3 23 23 H 1.08996 * 109.47206 * 239.99967 * 2 1 3 24 24 H 1.09001 * 109.46727 * 119.99725 * 2 1 3 25 25 H 1.09006 * 109.46501 * 299.99895 * 3 2 1 26 26 H 1.08996 * 109.47096 * 59.99900 * 3 2 1 27 27 H 0.96996 * 119.99794 * 179.97438 * 8 7 5 28 28 H 1.08995 * 109.46474 * 209.99433 * 13 4 3 29 29 H 1.09000 * 109.46719 * 329.98770 * 13 4 3 30 30 H 1.07997 * 120.79300 * 0.02562 * 15 14 13 31 31 H 1.08002 * 120.41826 * 180.21920 * 16 15 14 32 32 H 1.08002 * 119.61581 * 179.74921 * 17 16 15 33 33 H 1.08002 * 119.61684 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1903 1.4529 1.1850 6 1 3.7896 1.9845 2.0355 7 6 5.3996 0.7803 1.2936 8 7 5.6764 -0.2124 0.4749 9 14 6.6342 1.2841 2.6019 10 1 6.0868 2.4185 3.3884 11 1 6.8939 0.1351 3.5060 12 1 7.9032 1.6988 1.9514 13 6 4.2371 1.4313 -1.2696 14 6 4.4880 2.8482 -1.7172 15 6 3.5718 3.5011 -2.5280 16 6 3.8421 4.8056 -2.9114 17 6 5.0127 5.4042 -2.4847 18 7 5.8637 4.7510 -1.7181 19 6 5.6365 3.5114 -1.3293 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 -0.8901 26 1 1.6767 1.9564 0.8899 27 1 6.5217 -0.6821 0.5506 28 1 5.1895 0.9187 -1.1351 29 1 3.6477 0.9107 -2.0244 30 1 2.6673 3.0065 -2.8498 31 1 3.1492 5.3457 -3.5395 32 1 5.2327 6.4188 -2.7824 33 1 6.3568 3.0086 -0.7010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045092625.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:29 Heat of formation + Delta-G solvation = 27.151506 kcal Electronic energy + Delta-G solvation = -14954.963279 eV Core-core repulsion = 12594.224547 eV Total energy + Delta-G solvation = -2360.738731 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.89889 -37.96143 -34.69561 -33.80366 -32.64762 -31.70255 -27.63370 -27.33433 -24.27370 -24.12373 -22.67314 -21.53551 -18.78364 -17.78078 -17.21109 -16.64958 -16.03657 -15.79442 -15.64483 -15.03025 -14.52738 -14.35620 -14.00541 -13.77554 -13.37621 -13.13720 -12.77584 -12.67837 -12.51361 -12.22296 -11.99361 -11.85149 -11.79545 -11.33115 -10.61898 -10.58046 -10.24191 -9.73423 -8.63763 -7.86998 -5.41736 0.36916 0.51253 1.40550 1.46588 1.54030 2.48369 2.99838 3.22679 3.69128 3.81746 4.09209 4.19629 4.27776 4.30358 4.37208 4.47534 4.67438 4.72195 4.82468 4.95377 5.02601 5.03727 5.19649 5.28217 5.33683 5.46680 5.49977 5.59748 5.68978 5.79328 5.99657 6.44037 7.13013 7.17879 7.83161 8.33388 9.10121 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.017213 B = 0.013630 C = 0.008343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.272351 B = 2053.871852 C = 3355.462662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.147 3.853 4 N -0.591 5.591 5 C -0.259 4.259 6 H 0.050 0.950 7 C -0.027 4.027 8 N -0.908 5.908 9 Si 0.939 3.061 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.180 3.820 14 C -0.134 4.134 15 C -0.083 4.083 16 C -0.163 4.163 17 C 0.068 3.932 18 N -0.516 5.516 19 C 0.087 3.913 20 H 0.055 0.945 21 H 0.054 0.946 22 H 0.064 0.936 23 H 0.039 0.961 24 H 0.029 0.971 25 H 0.056 0.944 26 H 0.038 0.962 27 H 0.253 0.747 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.146 0.854 31 H 0.170 0.830 32 H 0.181 0.819 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.104 6.275 -6.771 11.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C 0.022 3.978 4 N -0.310 5.310 5 C -0.389 4.389 6 H 0.068 0.932 7 C -0.225 4.225 8 N -0.552 5.552 9 Si 0.768 3.232 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.214 1.214 13 C 0.054 3.946 14 C -0.138 4.138 15 C -0.110 4.110 16 C -0.182 4.182 17 C -0.090 4.090 18 N -0.225 5.225 19 C -0.069 4.069 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.083 0.917 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.164 0.836 31 H 0.187 0.813 32 H 0.198 0.802 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.219 6.563 -6.471 11.119 hybrid contribution 0.335 -0.616 0.729 1.011 sum -5.884 5.947 -5.743 10.147 Atomic orbital electron populations 1.21662 0.94133 1.01690 1.02022 1.21927 0.96140 0.99160 0.99894 1.21067 0.83214 0.94468 0.99098 1.44000 1.00823 1.84780 1.01391 1.19184 1.03562 1.24945 0.91216 0.93187 1.25525 1.01800 0.95317 0.99840 1.70075 1.23820 1.20110 1.41223 0.85652 0.79956 0.77813 0.79777 1.19892 1.21589 1.21412 1.19788 0.99459 0.89176 0.86197 1.21983 0.94777 1.00931 0.96132 1.21760 0.98599 0.95154 0.95436 1.22438 0.98952 0.95327 1.01478 1.23230 0.90903 1.00748 0.94138 1.67594 1.33638 1.08929 1.12347 1.22340 0.96523 0.90729 0.97341 0.92569 0.92699 0.91664 0.94167 0.95197 0.92591 0.94386 0.93781 0.90551 0.93772 0.83614 0.81256 0.80183 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.91 71.98 0.71 -3.08 16 2 C -0.13 -4.95 6.26 30.60 0.19 -4.75 16 3 C 0.15 5.88 5.67 86.38 0.49 6.37 16 4 N -0.59 -28.48 2.43 -706.33 -1.72 -30.20 16 5 C -0.26 -14.01 9.48 84.03 0.80 -13.21 16 6 H 0.05 2.78 7.93 -2.91 -0.02 2.75 16 7 C -0.03 -1.48 4.94 84.86 0.42 -1.06 16 8 N -0.91 -51.69 11.34 21.65 0.25 -51.45 16 9 Si 0.94 44.89 29.61 68.60 2.03 46.92 16 10 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 12 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 13 C 0.18 8.26 5.45 85.63 0.47 8.73 16 14 C -0.13 -5.42 5.48 -19.78 -0.11 -5.53 16 15 C -0.08 -2.64 9.86 22.47 0.22 -2.41 16 16 C -0.16 -4.30 10.11 22.36 0.23 -4.07 16 17 C 0.07 2.02 11.18 84.69 0.95 2.96 16 18 N -0.52 -20.14 10.36 -195.84 -2.03 -22.17 16 19 C 0.09 3.77 10.86 84.67 0.92 4.69 16 20 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 21 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 23 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.06 1.95 8.08 -2.38 -0.02 1.93 16 26 H 0.04 1.54 8.04 -2.39 -0.02 1.52 16 27 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 28 H 0.08 4.06 5.28 -2.39 -0.01 4.05 16 29 H 0.04 1.88 8.02 -2.39 -0.02 1.86 16 30 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 31 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 32 H 0.18 3.88 8.06 -2.91 -0.02 3.86 16 33 H 0.12 5.78 8.06 -2.91 -0.02 5.76 16 Total: -1.00 -62.52 282.88 4.88 -57.64 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 1.07 Total: 10.64 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 5.28 Total: -11.37 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -3.50 Total: -103.82 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -62.52 4.88 -57.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092625.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.791 kcal (2) G-P(sol) polarization free energy of solvation -62.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds