Wall clock time and date at job start Mon Mar 30 2020 03:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46495 * 119.99836 * 2 1 4 4 C 1.39772 * 119.99786 * 180.02562 * 2 1 3 5 5 C 1.38973 * 119.98575 * 179.72055 * 4 2 1 6 6 C 1.37967 * 120.01269 * 179.76593 * 5 4 2 7 7 C 1.39094 * 119.98591 * 0.50822 * 6 5 4 8 8 N 1.39404 * 120.01422 * 179.72031 * 7 6 5 9 9 C 1.46502 * 120.00315 * 180.02562 * 8 7 6 10 10 C 1.36835 * 119.99971 * 0.02591 * 8 7 6 11 11 H 1.07995 * 120.00110 * 25.44489 * 10 8 7 12 12 C 1.38746 * 119.99984 * 205.43986 * 10 8 7 13 13 N 1.31627 * 119.99890 * 14.88860 * 12 10 8 14 14 Si 1.86796 * 120.00024 * 194.88664 * 12 10 8 15 15 H 1.48502 * 109.47022 * 0.02562 * 14 12 10 16 16 H 1.48493 * 109.47017 * 120.00338 * 14 12 10 17 17 H 1.48506 * 109.47087 * 240.00424 * 14 12 10 18 18 C 1.39096 * 119.97301 * 359.75056 * 7 6 5 19 19 C 1.37967 * 119.98280 * 359.97438 * 18 7 6 20 20 H 1.09000 * 109.47028 * 270.00307 * 1 2 3 21 21 H 1.08997 * 109.46739 * 29.99537 * 1 2 3 22 22 H 1.08998 * 109.47221 * 149.99836 * 1 2 3 23 23 H 1.09010 * 109.46912 * 269.99626 * 3 2 1 24 24 H 1.08994 * 109.47456 * 30.00062 * 3 2 1 25 25 H 1.09007 * 109.47142 * 150.00382 * 3 2 1 26 26 H 1.07999 * 119.99267 * 0.02562 * 5 4 2 27 27 H 1.08006 * 120.00098 * 180.23694 * 6 5 4 28 28 H 1.09005 * 109.46804 * 84.83899 * 9 8 7 29 29 H 1.08993 * 109.47624 * 204.83886 * 9 8 7 30 30 H 1.08997 * 109.47226 * 324.84665 * 9 8 7 31 31 H 0.96998 * 120.00097 * 179.97438 * 13 12 10 32 32 H 1.08006 * 120.01028 * 179.97438 * 18 7 6 33 33 H 1.08000 * 119.99245 * 179.97438 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1639 -1.2105 -0.0005 5 6 3.5536 -1.2102 -0.0064 6 6 4.2440 -2.4047 -0.0021 7 6 3.5488 -3.6094 -0.0025 8 7 4.2457 -4.8167 -0.0040 9 6 3.5132 -6.0855 -0.0050 10 6 5.6141 -4.8168 -0.0045 11 1 6.1543 -3.9727 0.3980 12 6 6.3076 -5.9013 -0.5221 13 7 5.6822 -6.7868 -1.2687 14 14 8.1286 -6.1048 -0.1593 15 1 8.5910 -4.9834 0.6973 16 1 8.3518 -7.3916 0.5474 17 1 8.8907 -6.1015 -1.4340 18 6 2.1578 -3.6091 -0.0021 19 6 1.4686 -2.4139 -0.0007 20 1 -0.3633 0.0001 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8899 -0.5138 23 1 2.3792 1.5833 -1.0278 24 1 1.6085 2.0283 0.5138 25 1 3.1500 1.1384 0.5138 26 1 4.0933 -0.2747 -0.0101 27 1 5.3240 -2.4042 -0.0028 28 1 3.2512 -6.3529 -1.0288 29 1 4.1393 -6.8669 0.4256 30 1 2.6042 -5.9807 0.5871 31 1 6.1671 -7.5449 -1.6308 32 1 1.6174 -4.5442 -0.0028 33 1 0.3886 -2.4134 -0.0007 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049806481.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:22 Heat of formation + Delta-G solvation = 57.575186 kcal Electronic energy + Delta-G solvation = -14669.405215 eV Core-core repulsion = 12309.985753 eV Total energy + Delta-G solvation = -2359.419462 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.75230 -36.66469 -34.30847 -31.58300 -30.30482 -28.07151 -27.76453 -26.24798 -24.47250 -22.36633 -21.11459 -19.47294 -17.16749 -16.85381 -15.43636 -14.92355 -14.54928 -14.31200 -13.78729 -13.55054 -13.11882 -12.72217 -12.38668 -12.31947 -11.83288 -11.57726 -11.54420 -11.31031 -11.14764 -10.93093 -10.69539 -10.46223 -10.25299 -9.67804 -9.39398 -8.76790 -7.91461 -7.64298 -6.32001 -5.83190 -3.59232 2.48691 2.83385 3.22608 3.25537 3.29641 3.82608 4.16898 4.84728 5.17590 5.25839 5.37854 5.43882 5.57003 5.78230 5.83731 5.93280 6.03601 6.04037 6.40316 6.50897 6.53127 6.73376 6.95386 7.06574 7.20290 7.24932 7.33407 7.52899 7.65766 7.81004 8.06161 8.10282 8.43433 8.81122 9.47501 9.82059 10.79221 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.050231 B = 0.006841 C = 0.006137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.295779 B = 4092.161924 C = 4561.176065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.652 5.652 3 C 0.107 3.893 4 C 0.092 3.908 5 C -0.131 4.131 6 C -0.175 4.175 7 C 0.184 3.816 8 N -0.465 5.465 9 C 0.129 3.871 10 C -0.300 4.300 11 H 0.091 0.909 12 C 0.023 3.977 13 N -0.881 5.881 14 Si 0.920 3.080 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.283 1.283 18 C -0.201 4.201 19 C -0.131 4.131 20 H 0.032 0.968 21 H 0.051 0.949 22 H 0.061 0.939 23 H 0.033 0.967 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.023 0.977 31 H 0.265 0.735 32 H 0.107 0.893 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.242 8.731 2.347 10.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.372 5.372 3 C -0.037 4.037 4 C -0.006 4.006 5 C -0.153 4.153 6 C -0.199 4.199 7 C 0.070 3.930 8 N -0.156 5.156 9 C -0.015 4.015 10 C -0.429 4.429 11 H 0.108 0.892 12 C -0.180 4.180 13 N -0.519 5.519 14 Si 0.748 3.252 15 H -0.194 1.194 16 H -0.208 1.208 17 H -0.209 1.209 18 C -0.226 4.226 19 C -0.153 4.153 20 H 0.051 0.949 21 H 0.070 0.930 22 H 0.080 0.920 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.134 0.866 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.084 8.362 2.242 10.581 hybrid contribution 0.880 -0.231 0.007 0.909 sum -5.204 8.131 2.249 9.913 Atomic orbital electron populations 1.21347 0.81222 1.01358 0.99758 1.45780 1.03554 1.02817 1.85000 1.21352 0.96967 0.85560 0.99831 1.17262 0.90829 0.84790 1.07678 1.20274 0.91766 0.97096 1.06213 1.20324 0.99152 0.90405 1.10049 1.17933 0.90610 0.87010 0.97400 1.42329 1.04370 1.01084 1.67797 1.21262 0.93671 0.86758 0.99809 1.19506 0.80710 1.05482 1.37177 0.89168 1.25291 0.99820 0.97358 0.95524 1.70110 1.36808 1.13828 1.31173 0.85955 0.82794 0.78326 0.78174 1.19411 1.20791 1.20886 1.20208 0.92475 0.96847 1.13076 1.20153 0.97664 0.90972 1.06526 0.94918 0.93046 0.91989 0.94877 0.93049 0.91945 0.87818 0.86570 0.93859 0.91567 0.95837 0.92531 0.87458 0.87904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.37 10.19 59.85 0.61 1.98 16 2 N -0.65 -10.39 3.41 -187.47 -0.64 -11.03 16 3 C 0.11 1.39 10.18 59.84 0.61 2.00 16 4 C 0.09 1.77 6.56 -83.69 -0.55 1.22 16 5 C -0.13 -2.63 9.20 -39.41 -0.36 -2.99 16 6 C -0.17 -3.98 9.26 -39.36 -0.36 -4.34 16 7 C 0.18 4.45 6.52 -83.78 -0.55 3.91 16 8 N -0.47 -12.11 3.12 -120.48 -0.38 -12.48 16 9 C 0.13 3.11 8.33 59.85 0.50 3.61 16 10 C -0.30 -8.10 8.93 -15.13 -0.14 -8.23 16 11 H 0.09 2.38 6.26 -52.49 -0.33 2.05 16 12 C 0.02 0.61 4.97 -17.45 -0.09 0.52 16 13 N -0.88 -24.27 11.04 55.49 0.61 -23.66 16 14 Si 0.92 20.55 29.58 -169.99 -5.03 15.52 16 15 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 18 C -0.20 -4.37 9.20 -39.36 -0.36 -4.73 16 19 C -0.13 -2.56 9.20 -39.41 -0.36 -2.92 16 20 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 21 H 0.05 0.54 8.07 -51.93 -0.42 0.12 16 22 H 0.06 0.80 6.19 -51.93 -0.32 0.47 16 23 H 0.03 0.41 8.14 -51.92 -0.42 -0.01 16 24 H 0.05 0.55 8.07 -51.93 -0.42 0.13 16 25 H 0.06 0.82 6.20 -51.93 -0.32 0.49 16 26 H 0.10 1.83 6.14 -52.49 -0.32 1.50 16 27 H 0.12 2.67 6.21 -52.48 -0.33 2.34 16 28 H 0.04 1.09 7.85 -51.93 -0.41 0.68 16 29 H 0.07 1.66 6.87 -51.93 -0.36 1.30 16 30 H 0.02 0.50 6.48 -51.93 -0.34 0.16 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.11 2.21 6.25 -52.48 -0.33 1.88 16 33 H 0.10 1.75 6.13 -52.49 -0.32 1.42 16 LS Contribution 266.33 15.07 4.01 4.01 Total: -1.00 -29.13 266.33 -6.66 -35.79 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -4.19 Total: 1.82 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -1.05 Total: -9.98 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.40 Total: -47.17 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.13 -6.66 -35.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049806481.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.366 kcal (2) G-P(sol) polarization free energy of solvation -29.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds