Wall clock time and date at job start Mon Mar 30 2020 03:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46495 * 119.99836 * 2 1 4 4 C 1.39772 * 119.99786 * 180.02562 * 2 1 3 5 5 C 1.38973 * 119.98575 * 179.72055 * 4 2 1 6 6 C 1.37967 * 120.01269 * 179.76593 * 5 4 2 7 7 C 1.39094 * 119.98591 * 0.50822 * 6 5 4 8 8 N 1.39404 * 120.01422 * 179.72031 * 7 6 5 9 9 C 1.46502 * 120.00315 * 180.02562 * 8 7 6 10 10 C 1.36835 * 119.99971 * 0.02591 * 8 7 6 11 11 H 1.07995 * 120.00110 * 25.44489 * 10 8 7 12 12 C 1.38746 * 119.99984 * 205.43986 * 10 8 7 13 13 N 1.31627 * 119.99890 * 14.88860 * 12 10 8 14 14 Si 1.86796 * 120.00024 * 194.88664 * 12 10 8 15 15 H 1.48502 * 109.47022 * 0.02562 * 14 12 10 16 16 H 1.48493 * 109.47017 * 120.00338 * 14 12 10 17 17 H 1.48506 * 109.47087 * 240.00424 * 14 12 10 18 18 C 1.39096 * 119.97301 * 359.75056 * 7 6 5 19 19 C 1.37967 * 119.98280 * 359.97438 * 18 7 6 20 20 H 1.09000 * 109.47028 * 270.00307 * 1 2 3 21 21 H 1.08997 * 109.46739 * 29.99537 * 1 2 3 22 22 H 1.08998 * 109.47221 * 149.99836 * 1 2 3 23 23 H 1.09010 * 109.46912 * 269.99626 * 3 2 1 24 24 H 1.08994 * 109.47456 * 30.00062 * 3 2 1 25 25 H 1.09007 * 109.47142 * 150.00382 * 3 2 1 26 26 H 1.07999 * 119.99267 * 0.02562 * 5 4 2 27 27 H 1.08006 * 120.00098 * 180.23694 * 6 5 4 28 28 H 1.09005 * 109.46804 * 84.83899 * 9 8 7 29 29 H 1.08993 * 109.47624 * 204.83886 * 9 8 7 30 30 H 1.08997 * 109.47226 * 324.84665 * 9 8 7 31 31 H 0.96998 * 120.00097 * 179.97438 * 13 12 10 32 32 H 1.08006 * 120.01028 * 179.97438 * 18 7 6 33 33 H 1.08000 * 119.99245 * 179.97438 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1639 -1.2105 -0.0005 5 6 3.5536 -1.2102 -0.0064 6 6 4.2440 -2.4047 -0.0021 7 6 3.5488 -3.6094 -0.0025 8 7 4.2457 -4.8167 -0.0040 9 6 3.5132 -6.0855 -0.0050 10 6 5.6141 -4.8168 -0.0045 11 1 6.1543 -3.9727 0.3980 12 6 6.3076 -5.9013 -0.5221 13 7 5.6822 -6.7868 -1.2687 14 14 8.1286 -6.1048 -0.1593 15 1 8.5910 -4.9834 0.6973 16 1 8.3518 -7.3916 0.5474 17 1 8.8907 -6.1015 -1.4340 18 6 2.1578 -3.6091 -0.0021 19 6 1.4686 -2.4139 -0.0007 20 1 -0.3633 0.0001 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8899 -0.5138 23 1 2.3792 1.5833 -1.0278 24 1 1.6085 2.0283 0.5138 25 1 3.1500 1.1384 0.5138 26 1 4.0933 -0.2747 -0.0101 27 1 5.3240 -2.4042 -0.0028 28 1 3.2512 -6.3529 -1.0288 29 1 4.1393 -6.8669 0.4256 30 1 2.6042 -5.9807 0.5871 31 1 6.1671 -7.5449 -1.6308 32 1 1.6174 -4.5442 -0.0028 33 1 0.3886 -2.4134 -0.0007 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049806481.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:22 Heat of formation + Delta-G solvation = 41.175833 kcal Electronic energy + Delta-G solvation = -14670.116344 eV Core-core repulsion = 12309.985753 eV Total energy + Delta-G solvation = -2360.130591 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.37882 -38.25795 -35.90150 -33.45136 -31.90646 -29.67081 -29.03055 -28.02799 -26.06681 -23.95989 -22.75698 -21.08948 -18.98002 -18.50596 -17.10247 -16.40857 -16.04702 -15.68412 -15.39124 -15.21918 -14.97478 -14.25567 -13.99439 -13.38169 -13.27704 -13.18393 -13.00136 -12.85298 -12.75909 -12.55163 -12.46860 -12.19925 -12.02547 -11.36600 -11.12597 -10.58668 -9.57422 -9.27637 -8.24825 -7.49875 -5.58257 0.80800 1.15191 1.42809 1.48250 1.55957 2.33335 2.60963 2.99828 3.37083 3.44280 4.19038 4.27215 4.42586 4.56915 4.61860 4.65437 4.78256 4.86817 4.96598 4.99976 5.01593 5.04611 5.12820 5.32821 5.40703 5.50081 5.60559 5.69882 5.94292 6.11070 6.25483 6.74562 6.86026 6.95293 7.59735 7.91599 8.84608 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.050231 B = 0.006841 C = 0.006137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.295779 B = 4092.161924 C = 4561.176065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.656 5.656 3 C 0.099 3.901 4 C 0.111 3.889 5 C -0.139 4.139 6 C -0.189 4.189 7 C 0.151 3.849 8 N -0.497 5.497 9 C 0.146 3.854 10 C -0.316 4.316 11 H 0.085 0.915 12 C -0.026 4.026 13 N -0.917 5.917 14 Si 0.987 3.013 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.282 1.282 18 C -0.201 4.201 19 C -0.137 4.137 20 H 0.044 0.956 21 H 0.078 0.922 22 H 0.060 0.940 23 H 0.041 0.959 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.128 0.872 27 H 0.103 0.897 28 H 0.022 0.978 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.264 0.736 32 H 0.114 0.886 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.476 11.059 2.804 13.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.375 5.375 3 C -0.044 4.044 4 C 0.011 3.989 5 C -0.161 4.161 6 C -0.213 4.213 7 C 0.041 3.959 8 N -0.192 5.192 9 C 0.002 3.998 10 C -0.445 4.445 11 H 0.103 0.897 12 C -0.225 4.225 13 N -0.556 5.556 14 Si 0.812 3.188 15 H -0.187 1.187 16 H -0.204 1.204 17 H -0.208 1.208 18 C -0.225 4.225 19 C -0.159 4.159 20 H 0.063 0.937 21 H 0.097 0.903 22 H 0.079 0.921 23 H 0.060 0.940 24 H 0.099 0.901 25 H 0.077 0.923 26 H 0.146 0.854 27 H 0.121 0.879 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.132 0.868 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.375 10.779 2.711 13.339 hybrid contribution 1.026 -0.649 -0.125 1.221 sum -6.348 10.130 2.586 12.231 Atomic orbital electron populations 1.21582 0.79138 1.02743 1.00907 1.46134 1.05089 1.02453 1.83779 1.21569 0.97210 0.84855 1.00768 1.17496 0.90797 0.86364 1.04249 1.20490 0.92552 0.97047 1.06046 1.20413 0.98843 0.91275 1.10775 1.18328 0.91807 0.86947 0.98827 1.42401 1.04211 1.01821 1.70740 1.21018 0.93999 0.86120 0.98680 1.19702 0.81761 1.05735 1.37258 0.89709 1.26102 1.03896 0.97098 0.95380 1.70226 1.38282 1.14485 1.32640 0.84946 0.77702 0.78331 0.77862 1.18714 1.20365 1.20808 1.20429 0.91676 0.98249 1.12181 1.20470 0.99252 0.90277 1.05902 0.93744 0.90293 0.92093 0.94042 0.90093 0.92281 0.85431 0.87891 0.95989 0.93469 0.93432 0.92659 0.86798 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.08 10.19 127.77 1.30 3.38 16 2 N -0.66 -18.23 3.41 -747.04 -2.55 -20.78 16 3 C 0.10 2.15 10.18 127.77 1.30 3.45 16 4 C 0.11 3.96 6.56 38.23 0.25 4.21 16 5 C -0.14 -5.35 9.20 22.38 0.21 -5.15 16 6 C -0.19 -8.66 9.26 22.41 0.21 -8.45 16 7 C 0.15 7.39 6.52 38.35 0.25 7.64 16 8 N -0.50 -26.70 3.12 -535.08 -1.67 -28.37 16 9 C 0.15 7.29 8.33 127.77 1.06 8.36 16 10 C -0.32 -17.65 8.93 84.03 0.75 -16.90 16 11 H 0.09 4.65 6.26 -2.91 -0.02 4.63 16 12 C -0.03 -1.41 4.97 84.84 0.42 -0.99 16 13 N -0.92 -52.31 11.04 21.64 0.24 -52.07 16 14 Si 0.99 43.24 29.58 68.60 2.03 45.27 16 15 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 16 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 18 C -0.20 -8.56 9.20 22.41 0.21 -8.36 16 19 C -0.14 -5.00 9.20 22.38 0.21 -4.79 16 20 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 21 H 0.08 1.26 8.07 -2.39 -0.02 1.24 16 22 H 0.06 1.30 6.19 -2.39 -0.01 1.29 16 23 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 24 H 0.08 1.32 8.07 -2.39 -0.02 1.30 16 25 H 0.06 1.33 6.20 -2.38 -0.01 1.32 16 26 H 0.13 4.21 6.14 -2.91 -0.02 4.19 16 27 H 0.10 4.90 6.21 -2.91 -0.02 4.88 16 28 H 0.02 1.15 7.85 -2.38 -0.02 1.13 16 29 H 0.05 2.47 6.87 -2.39 -0.02 2.45 16 30 H 0.05 2.06 6.48 -2.39 -0.02 2.04 16 31 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.11 4.61 6.25 -2.91 -0.02 4.59 16 33 H 0.13 4.03 6.13 -2.91 -0.02 4.01 16 Total: -1.00 -63.65 266.33 5.32 -58.33 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 1.10 Total: 15.22 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 6.17 Total: -17.60 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -3.98 Total: -101.22 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -63.65 5.32 -58.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049806481.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.510 kcal (2) G-P(sol) polarization free energy of solvation -63.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds