Wall clock time and date at job start Mon Mar 30 2020 03:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99663 * 2 1 4 4 C 1.52992 * 109.47469 * 293.95292 * 3 2 1 5 5 C 1.50702 * 109.47370 * 180.02562 * 4 3 2 6 6 H 1.07998 * 119.99800 * 359.97438 * 5 4 3 7 7 C 1.37872 * 119.99988 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00130 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 120.00418 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46868 * 89.99815 * 9 7 5 11 11 H 1.48494 * 109.47371 * 210.00036 * 9 7 5 12 12 H 1.48501 * 109.46781 * 330.00095 * 9 7 5 13 13 C 1.40016 * 111.00484 * 123.95815 * 2 1 3 14 14 C 1.38662 * 120.09175 * 296.04939 * 13 2 1 15 15 C 1.38272 * 119.99702 * 179.97438 * 14 13 2 16 16 C 1.38249 * 120.19351 * 359.97292 * 15 14 13 17 17 C 1.38270 * 120.19373 * 0.02562 * 16 15 14 18 18 C 1.38659 * 119.99852 * 0.28098 * 17 16 15 19 19 N 1.40017 * 120.09924 * 179.69693 * 18 17 16 20 20 H 1.09000 * 109.47216 * 296.03822 * 1 2 3 21 21 H 1.08996 * 109.47264 * 56.04336 * 1 2 3 22 22 H 1.09006 * 109.46947 * 176.04556 * 1 2 3 23 23 H 1.08992 * 109.47254 * 53.95935 * 3 2 1 24 24 H 1.09008 * 109.47172 * 173.95341 * 3 2 1 25 25 H 1.08998 * 109.47809 * 300.00588 * 4 3 2 26 26 H 1.09000 * 109.47065 * 60.00123 * 4 3 2 27 27 H 0.97000 * 120.00381 * 179.97438 * 8 7 5 28 28 H 1.08004 * 120.00658 * 359.97278 * 14 13 2 29 29 H 1.07998 * 119.90140 * 180.02562 * 15 14 13 30 30 H 1.07999 * 119.90433 * 180.02562 * 16 15 14 31 31 H 1.08002 * 119.99820 * 179.97438 * 17 16 15 32 32 H 0.96999 * 119.99266 * 359.97438 * 19 18 17 33 33 H 0.96994 * 120.00456 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1719 3.4642 -1.3184 6 1 2.7199 3.8323 -0.4636 7 6 1.9660 4.2817 -2.4094 8 7 2.4382 5.5091 -2.4098 9 14 1.0176 3.6453 -3.8877 10 1 -0.4280 3.9351 -3.7104 11 1 1.5098 4.3161 -5.1177 12 1 1.2172 2.1789 -4.0099 13 6 1.9709 -0.7301 1.0842 14 6 1.7282 -0.3041 2.3812 15 6 2.2243 -1.0270 3.4505 16 6 2.9623 -2.1753 3.2310 17 6 3.2090 -2.6073 1.9409 18 6 2.7207 -1.8851 0.8626 19 7 2.9747 -2.3172 -0.4448 20 1 -0.3633 0.4511 0.9233 21 1 -0.3633 0.5740 -0.8524 22 1 -0.3633 -1.0253 -0.0709 23 1 1.5611 1.9273 0.8309 24 1 3.0797 1.3445 0.1083 25 1 2.0656 1.5017 -2.1492 26 1 0.5471 2.0845 -1.4264 27 1 2.2936 6.0842 -3.1775 28 1 1.1518 0.5922 2.5564 29 1 2.0341 -0.6940 4.4601 30 1 3.3472 -2.7365 4.0695 31 1 3.7862 -3.5046 1.7730 32 1 3.4932 -3.1227 -0.5971 33 1 2.6321 -1.8112 -1.1980 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050014971.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:29 Heat of formation + Delta-G solvation = 7.718014 kcal Electronic energy + Delta-G solvation = -14628.560126 eV Core-core repulsion = 12266.978695 eV Total energy + Delta-G solvation = -2361.581431 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.83051 -37.82078 -35.19414 -35.08458 -32.44653 -30.48186 -29.17937 -27.64208 -25.59497 -23.39507 -22.30308 -21.33126 -19.11201 -18.07986 -17.59937 -17.09806 -16.26970 -15.94562 -15.66585 -15.14090 -14.80437 -14.68601 -14.56905 -13.96137 -13.66243 -13.37389 -12.95482 -12.69063 -12.56067 -12.25137 -11.88478 -11.76712 -11.59085 -11.43063 -11.41426 -10.76237 -9.61407 -9.40471 -8.30730 -8.26935 -6.35416 0.48357 0.79194 1.36118 1.38541 1.51532 2.36238 2.95897 2.99736 3.04993 3.22373 4.07766 4.22498 4.29211 4.36721 4.51198 4.59936 4.63517 4.74076 4.86859 4.90042 4.99886 5.06947 5.27815 5.39813 5.43247 5.58281 5.65978 5.75957 6.01572 6.02844 6.27219 6.41141 6.71839 6.82667 7.16655 7.29282 8.86421 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.043187 B = 0.006676 C = 0.006375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.183386 B = 4193.026802 C = 4391.065643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.502 5.502 3 C 0.093 3.907 4 C 0.002 3.998 5 C -0.535 4.535 6 H 0.028 0.972 7 C 0.007 3.993 8 N -0.951 5.951 9 Si 0.954 3.046 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.245 1.245 13 C -0.015 4.015 14 C -0.116 4.116 15 C -0.182 4.182 16 C -0.075 4.075 17 C -0.202 4.202 18 C 0.227 3.773 19 N -0.863 5.863 20 H 0.026 0.974 21 H 0.069 0.931 22 H 0.077 0.923 23 H 0.018 0.982 24 H 0.049 0.951 25 H 0.024 0.976 26 H 0.023 0.977 27 H 0.267 0.733 28 H 0.106 0.894 29 H 0.132 0.868 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.405 0.595 33 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.892 -18.950 7.041 20.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.223 5.223 3 C -0.034 4.034 4 C -0.035 4.035 5 C -0.574 4.574 6 H 0.046 0.954 7 C -0.190 4.190 8 N -0.592 5.592 9 Si 0.777 3.223 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.168 1.168 13 C -0.113 4.113 14 C -0.136 4.136 15 C -0.203 4.203 16 C -0.093 4.093 17 C -0.226 4.226 18 C 0.119 3.881 19 N -0.402 5.402 20 H 0.044 0.956 21 H 0.087 0.913 22 H 0.096 0.904 23 H 0.037 0.963 24 H 0.067 0.933 25 H 0.043 0.957 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.150 0.850 30 H 0.167 0.833 31 H 0.163 0.837 32 H 0.235 0.765 33 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.733 -19.018 6.503 20.173 hybrid contribution -0.413 1.013 -0.212 1.114 sum -2.146 -18.004 6.291 19.192 Atomic orbital electron populations 1.22451 0.86146 1.02282 1.00774 1.59533 1.08511 1.13546 1.40730 1.21822 0.98118 0.86163 0.97292 1.19439 0.96339 0.93160 0.94591 1.21395 1.35302 0.98007 1.02665 0.95380 1.25997 0.96421 0.94674 1.01923 1.70070 1.48034 1.08824 1.32265 0.85607 0.78966 0.80021 0.77750 1.19017 1.20932 1.16832 1.18562 1.05811 0.97426 0.89505 1.21515 0.99505 0.99317 0.93312 1.21006 1.03019 0.97701 0.98562 1.21218 0.95829 0.95365 0.96894 1.20832 1.07331 1.02959 0.91440 1.17873 0.92077 0.91337 0.86802 1.42476 1.61953 1.31669 1.04064 0.95551 0.91256 0.90423 0.96329 0.93273 0.95732 0.95908 0.92406 0.87567 0.85010 0.83292 0.83716 0.76541 0.76663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.19 127.69 1.17 2.12 16 2 N -0.50 -17.50 3.90 -719.43 -2.81 -20.31 16 3 C 0.09 3.94 4.48 86.30 0.39 4.33 16 4 C 0.00 0.12 3.97 29.85 0.12 0.24 16 5 C -0.54 -31.73 9.66 25.60 0.25 -31.48 16 6 H 0.03 1.84 7.99 -2.91 -0.02 1.81 16 7 C 0.01 0.40 5.47 84.65 0.46 0.86 16 8 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 9 Si 0.95 44.70 27.47 68.60 1.88 46.58 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.24 -10.68 6.54 99.48 0.65 -10.02 16 13 C -0.01 -0.47 4.71 38.23 0.18 -0.29 16 14 C -0.12 -3.51 8.66 22.38 0.19 -3.32 16 15 C -0.18 -4.50 10.04 22.28 0.22 -4.28 16 16 C -0.07 -1.58 10.04 22.28 0.22 -1.36 16 17 C -0.20 -4.52 9.89 22.38 0.22 -4.30 16 18 C 0.23 6.21 6.78 38.23 0.26 6.47 16 19 N -0.86 -20.12 9.09 -50.96 -0.46 -20.58 16 20 H 0.03 0.80 7.35 -2.39 -0.02 0.78 16 21 H 0.07 2.23 6.30 -2.39 -0.02 2.22 16 22 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 23 H 0.02 0.81 7.48 -2.39 -0.02 0.80 16 24 H 0.05 2.22 8.06 -2.38 -0.02 2.20 16 25 H 0.02 1.18 7.20 -2.39 -0.02 1.16 16 26 H 0.02 1.05 5.90 -2.39 -0.01 1.04 16 27 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 28 H 0.11 3.33 7.14 -2.91 -0.02 3.31 16 29 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 32 H 0.40 6.82 8.85 -92.71 -0.82 6.00 16 33 H 0.40 10.41 8.11 -92.71 -0.75 9.66 16 Total: -1.00 -67.95 273.06 2.09 -65.86 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -0.51 Total: 19.75 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 3.69 Total: -31.01 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -2.97 Total: -101.17 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.58 kcal Total: -67.95 2.09 -65.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050014971.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.574 kcal (2) G-P(sol) polarization free energy of solvation -67.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds