Wall clock time and date at job start Mon Mar 30 2020 03:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46895 * 109.47260 * 239.99238 * 2 1 3 13 13 C 1.46901 * 111.00222 * 183.95414 * 12 2 1 14 14 C 1.40021 * 110.99715 * 60.00406 * 12 2 1 15 15 C 1.38662 * 120.09571 * 59.99783 * 14 12 2 16 16 C 1.38272 * 120.00080 * 180.02562 * 15 14 12 17 17 C 1.38256 * 120.19074 * 359.97438 * 16 15 14 18 18 C 1.38278 * 120.19106 * 0.02562 * 17 16 15 19 19 C 1.38663 * 119.99866 * 359.67764 * 18 17 16 20 20 N 1.40014 * 120.09232 * 180.29994 * 19 18 17 21 21 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 22 22 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 23 23 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 25 25 H 1.09001 * 109.46990 * 59.99975 * 13 12 2 26 26 H 1.08995 * 109.47184 * 180.02562 * 13 12 2 27 27 H 1.09010 * 109.47004 * 300.00655 * 13 12 2 28 28 H 1.08004 * 120.00241 * 0.02562 * 15 14 12 29 29 H 1.07996 * 119.90701 * 179.97438 * 16 15 14 30 30 H 1.07996 * 119.90718 * 180.02562 * 17 16 15 31 31 H 1.08004 * 119.99785 * 179.97438 * 18 17 16 32 32 H 0.97001 * 119.99470 * 180.29348 * 20 19 18 33 33 H 0.96996 * 120.00341 * 0.29694 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.8178 -1.1113 4.0023 10 1 1.8417 -0.4090 5.2205 11 1 1.8384 -2.5122 4.0140 12 7 2.0196 -0.6926 -1.1993 13 6 3.4850 -0.7947 -1.1869 14 6 1.5707 -0.0578 -2.3638 15 6 1.9081 1.2647 -2.6089 16 6 1.4633 1.8898 -3.7593 17 6 0.6824 1.2000 -4.6679 18 6 0.3412 -0.1190 -4.4314 19 6 0.7881 -0.7555 -3.2834 20 7 0.4490 -2.0929 -3.0450 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 0.7164 1.1670 3.4843 25 1 3.8029 -1.3532 -0.3065 26 1 3.8209 -1.3111 -2.0860 27 1 3.9187 0.2051 -1.1590 28 1 2.5184 1.8064 -1.9014 29 1 1.7267 2.9200 -3.9485 30 1 0.3378 1.6926 -5.5651 31 1 -0.2693 -0.6548 -5.1432 32 1 0.7589 -2.5355 -2.2394 33 1 -0.0956 -2.5768 -3.6854 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063086721.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:40 Heat of formation + Delta-G solvation = 34.481884 kcal Electronic energy + Delta-G solvation = -15188.480008 eV Core-core repulsion = 12828.059146 eV Total energy + Delta-G solvation = -2360.420862 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.34460 -36.12280 -33.83267 -32.78020 -29.56548 -28.92814 -27.86854 -25.21345 -24.07668 -22.16403 -21.13192 -19.38902 -16.81542 -16.36733 -15.89973 -15.38460 -14.85367 -13.89592 -13.68117 -13.66182 -13.24457 -12.68063 -12.38485 -12.20998 -11.66268 -11.30638 -11.02673 -10.96961 -10.70023 -10.59731 -10.12038 -10.09749 -10.03844 -9.96553 -8.93319 -8.43666 -8.13918 -7.31297 -6.87394 -6.00997 -4.06322 1.93407 2.18159 3.31181 3.35954 3.38171 4.37758 4.41435 4.49917 4.97039 5.30692 5.41797 5.58724 5.80481 6.01213 6.11155 6.32002 6.40058 6.43028 6.69954 6.77769 6.90313 7.01148 7.10857 7.14766 7.19610 7.42281 7.53795 7.79377 7.82112 8.06837 8.18068 8.34194 8.41184 8.74326 8.99334 9.58467 11.05506 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.043361 B = 0.008205 C = 0.007958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.582625 B = 3411.934866 C = 3517.689670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.219 3.781 3 H 0.002 0.998 4 C -0.508 4.508 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.505 5.505 13 C 0.045 3.955 14 C 0.042 3.958 15 C -0.105 4.105 16 C -0.176 4.176 17 C -0.090 4.090 18 C -0.207 4.207 19 C 0.232 3.768 20 N -0.869 5.869 21 H 0.083 0.917 22 H 0.008 0.992 23 H 0.030 0.970 24 H 0.261 0.739 25 H 0.077 0.923 26 H 0.042 0.958 27 H 0.016 0.984 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.409 0.591 33 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.172 -1.867 -10.732 10.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.115 3.885 3 H 0.020 0.980 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.227 5.227 13 C -0.103 4.103 14 C -0.056 4.056 15 C -0.126 4.126 16 C -0.197 4.197 17 C -0.109 4.109 18 C -0.230 4.230 19 C 0.125 3.875 20 N -0.407 5.407 21 H 0.102 0.898 22 H 0.027 0.973 23 H 0.049 0.951 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.061 0.939 27 H 0.035 0.965 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.240 0.760 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.077 -2.211 -10.529 10.759 hybrid contribution 0.454 0.137 0.967 1.077 sum 0.377 -2.074 -9.562 9.792 Atomic orbital electron populations 1.21727 0.97563 0.99300 0.99897 1.19309 0.92416 0.91956 0.84862 0.97997 1.21124 1.31348 1.12353 0.89794 0.91898 1.24932 0.95199 0.95065 0.98986 1.69898 1.36722 1.22871 1.23523 0.86584 0.79072 0.79695 0.82156 1.20356 1.21369 1.20273 1.59797 1.09538 1.52379 1.00991 1.22207 0.87594 0.99452 1.01002 1.18531 1.01447 0.91759 0.93865 1.21507 0.99187 0.95067 0.96795 1.20692 1.03256 0.99673 0.96089 1.20694 0.97810 0.93876 0.98547 1.20390 1.07930 0.96213 0.98516 1.17677 0.92407 0.85109 0.92277 1.42446 1.60357 1.10144 1.27801 0.89830 0.97311 0.95106 0.92915 0.90399 0.93944 0.96545 0.86659 0.87299 0.87073 0.86957 0.76040 0.78653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.85 37.16 0.33 -2.88 16 2 C 0.22 5.56 1.84 -68.87 -0.13 5.43 16 3 H 0.00 0.07 7.13 -51.93 -0.37 -0.30 16 4 C -0.51 -13.73 7.92 -34.44 -0.27 -14.01 16 5 H 0.06 1.67 6.39 -52.49 -0.34 1.34 16 6 C 0.06 1.64 5.31 -17.82 -0.09 1.54 16 7 N -0.89 -25.46 11.33 55.43 0.63 -24.83 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.50 -10.91 3.78 -172.47 -0.65 -11.56 16 13 C 0.04 0.89 8.98 60.06 0.54 1.43 16 14 C 0.04 0.85 3.33 -83.50 -0.28 0.57 16 15 C -0.10 -2.01 8.62 -39.41 -0.34 -2.35 16 16 C -0.18 -2.92 10.04 -39.56 -0.40 -3.31 16 17 C -0.09 -1.37 10.04 -39.56 -0.40 -1.77 16 18 C -0.21 -3.22 9.89 -39.41 -0.39 -3.61 16 19 C 0.23 4.10 6.78 -83.50 -0.57 3.53 16 20 N -0.87 -13.30 9.09 32.54 0.30 -13.00 16 21 H 0.08 2.30 6.08 -51.93 -0.32 1.99 16 22 H 0.01 0.19 7.22 -51.93 -0.37 -0.18 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.08 1.61 6.23 -51.93 -0.32 1.28 16 26 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 27 H 0.02 0.32 7.48 -51.92 -0.39 -0.06 16 28 H 0.12 2.29 7.05 -52.48 -0.37 1.92 16 29 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 30 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 32 H 0.41 6.75 8.11 -40.82 -0.33 6.42 16 33 H 0.39 4.65 8.85 -40.82 -0.36 4.29 16 LS Contribution 269.94 15.07 4.07 4.07 Total: -1.00 -28.80 269.94 -7.09 -35.89 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -4.42 Total: 8.70 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -1.99 Total: -15.43 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.27 Total: -49.40 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.80 -7.09 -35.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063086721.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.376 kcal (2) G-P(sol) polarization free energy of solvation -28.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds