Wall clock time and date at job start Mon Mar 30 2020 03:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47088 * 2 1 4 4 C 1.50692 * 109.47453 * 120.00444 * 2 1 3 5 5 H 1.08005 * 120.00468 * 119.99513 * 4 2 1 6 6 C 1.37878 * 120.00098 * 300.00167 * 4 2 1 7 7 N 1.31513 * 120.00329 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99900 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47106 * 90.00195 * 8 6 4 10 10 H 1.48503 * 109.47294 * 210.00317 * 8 6 4 11 11 H 1.48501 * 109.47006 * 330.00487 * 8 6 4 12 12 N 1.46503 * 109.46809 * 240.00449 * 2 1 3 13 13 C 1.46498 * 120.00237 * 304.66283 * 12 2 1 14 14 C 1.39999 * 119.99841 * 124.66566 * 12 2 1 15 15 C 1.38867 * 120.00195 * 174.45690 * 14 12 2 16 16 C 1.38083 * 120.00048 * 180.25437 * 15 14 12 17 17 C 1.38862 * 120.00333 * 359.46268 * 16 15 14 18 18 N 1.39994 * 120.00022 * 180.27807 * 17 16 15 19 19 C 1.38861 * 119.99360 * 0.30377 * 17 16 15 20 20 C 1.38083 * 120.00470 * 359.95026 * 19 17 16 21 21 H 1.09004 * 109.46966 * 299.99393 * 1 2 3 22 22 H 1.08998 * 109.47174 * 59.99850 * 1 2 3 23 23 H 1.08998 * 109.47088 * 180.02562 * 1 2 3 24 24 H 0.96999 * 120.00201 * 180.02562 * 7 6 4 25 25 H 1.09003 * 109.47010 * 270.00216 * 13 12 2 26 26 H 1.09001 * 109.47242 * 29.99938 * 13 12 2 27 27 H 1.08997 * 109.47403 * 150.00330 * 13 12 2 28 28 H 1.08003 * 119.99642 * 359.97438 * 15 14 12 29 29 H 1.08003 * 119.99866 * 179.73584 * 16 15 14 30 30 H 0.97001 * 120.00583 * 0.02562 * 18 17 16 31 31 H 0.97006 * 119.99882 * 179.97438 * 18 17 16 32 32 H 1.08007 * 119.99282 * 179.97438 * 19 17 16 33 33 H 1.08002 * 120.00096 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 2.1382 -0.8592 3.5564 8 14 0.6259 1.2796 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9773 1.9951 3.9072 11 1 0.8491 2.1771 1.4924 12 7 2.0183 -0.6905 -1.1963 13 6 1.5821 -2.0598 -1.4810 14 6 2.9018 -0.0419 -2.0673 15 6 3.4546 -0.7331 -3.1374 16 6 4.3301 -0.0948 -3.9934 17 6 4.6491 1.2414 -3.7909 18 7 5.5321 1.8901 -4.6622 19 6 4.0925 1.9339 -2.7237 20 6 3.2211 1.2942 -1.8645 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.9036 -0.5281 4.4374 25 1 2.2709 -2.7647 -1.0154 26 1 0.5800 -2.2126 -1.0804 27 1 1.5710 -2.2209 -2.5590 28 1 3.2033 -1.7713 -3.2973 29 1 4.7633 -0.6336 -4.8231 30 1 5.9209 1.4063 -5.4077 31 1 5.7547 2.8236 -4.5209 32 1 4.3409 2.9731 -2.5659 33 1 2.7885 1.8328 -1.0343 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063086785.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:45 Heat of formation + Delta-G solvation = 45.689126 kcal Electronic energy + Delta-G solvation = -14850.274780 eV Core-core repulsion = 12490.339900 eV Total energy + Delta-G solvation = -2359.934880 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.06326 -36.56513 -33.69129 -32.28223 -30.74753 -29.85276 -27.59290 -25.35367 -24.68788 -22.25681 -21.19651 -19.29899 -17.30293 -16.54199 -16.22565 -15.73347 -14.92395 -14.18829 -13.90525 -13.47317 -12.99534 -12.86381 -12.72213 -12.40488 -12.18455 -11.90280 -11.51676 -11.30216 -11.13204 -10.68232 -10.35400 -10.24115 -9.91777 -9.59899 -9.20359 -8.61495 -8.38182 -8.02651 -6.12292 -5.94271 -4.11504 1.97942 2.41890 3.22169 3.31900 3.35100 4.14204 4.33414 4.34069 4.55089 5.18091 5.39520 5.48020 5.83034 5.92939 6.04331 6.14964 6.21966 6.29491 6.36040 6.43366 6.55711 6.60480 6.71445 6.80375 6.92879 7.04140 7.19297 7.31675 7.61623 7.93709 8.15097 8.21462 8.42130 8.67220 8.94568 9.49493 11.01349 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.037015 B = 0.008125 C = 0.007495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.262091 B = 3445.147018 C = 3735.093682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.240 3.760 3 H 0.048 0.952 4 C -0.524 4.524 5 H 0.078 0.922 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.267 1.267 12 N -0.611 5.611 13 C 0.106 3.894 14 C 0.193 3.807 15 C -0.169 4.169 16 C -0.147 4.147 17 C 0.134 3.866 18 N -0.894 5.894 19 C -0.144 4.144 20 C -0.156 4.156 21 H 0.047 0.953 22 H 0.033 0.967 23 H 0.056 0.944 24 H 0.265 0.735 25 H 0.040 0.960 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.389 0.611 31 H 0.389 0.611 32 H 0.111 0.889 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 3.595 -13.524 14.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.137 3.863 3 H 0.066 0.934 4 C -0.562 4.562 5 H 0.096 0.904 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.222 1.222 11 H -0.192 1.192 12 N -0.320 5.320 13 C -0.038 4.038 14 C 0.088 3.912 15 C -0.193 4.193 16 C -0.170 4.170 17 C 0.032 3.968 18 N -0.437 5.437 19 C -0.167 4.167 20 C -0.179 4.179 21 H 0.065 0.935 22 H 0.052 0.948 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.215 0.785 31 H 0.216 0.784 32 H 0.129 0.871 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.321 3.440 -13.115 13.623 hybrid contribution -0.335 0.856 0.162 0.933 sum 0.987 4.296 -12.953 13.683 Atomic orbital electron populations 1.22502 0.99620 1.01127 0.98961 1.19173 0.89686 0.93908 0.83484 0.93441 1.21331 1.32098 1.14239 0.88575 0.90436 1.24925 0.95759 0.96632 0.95733 1.69886 1.45397 1.40257 0.97933 0.86911 0.80642 0.83772 0.77180 1.20480 1.22248 1.19168 1.46590 1.47840 1.13534 1.24049 1.21348 0.99851 0.83963 0.98612 1.17781 0.91512 0.91482 0.90389 1.20370 1.01994 0.99646 0.97297 1.20184 1.02263 0.93143 1.01376 1.17475 0.94605 0.92145 0.92572 1.42217 1.53976 1.14007 1.33478 1.20280 1.01095 0.99144 0.96143 1.20620 1.02137 0.93737 1.01430 0.93464 0.94765 0.92530 0.92540 0.94159 0.91793 0.93303 0.86599 0.87299 0.78475 0.78402 0.87118 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 8.56 37.16 0.32 -3.21 16 2 C 0.24 5.67 2.17 -69.08 -0.15 5.52 16 3 H 0.05 1.15 4.37 -51.93 -0.23 0.93 16 4 C -0.52 -14.60 9.02 -34.44 -0.31 -14.91 16 5 H 0.08 2.39 8.03 -52.48 -0.42 1.97 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 7 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 8 Si 0.88 21.51 24.37 -169.99 -4.14 17.36 16 9 H -0.28 -6.56 6.87 56.52 0.39 -6.17 16 10 H -0.30 -7.21 7.11 56.52 0.40 -6.80 16 11 H -0.27 -6.16 6.53 56.52 0.37 -5.79 16 12 N -0.61 -12.95 2.90 -173.25 -0.50 -13.45 16 13 C 0.11 1.94 9.52 59.85 0.57 2.51 16 14 C 0.19 3.84 6.54 -83.66 -0.55 3.29 16 15 C -0.17 -2.94 9.16 -39.41 -0.36 -3.30 16 16 C -0.15 -2.28 9.89 -39.41 -0.39 -2.67 16 17 C 0.13 2.04 6.76 -83.67 -0.57 1.48 16 18 N -0.89 -10.17 9.10 32.46 0.30 -9.87 16 19 C -0.14 -2.39 9.89 -39.41 -0.39 -2.78 16 20 C -0.16 -3.02 9.31 -39.41 -0.37 -3.38 16 21 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 22 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 1.17 6.53 -51.93 -0.34 0.83 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.14 6.19 -51.93 -0.32 0.82 16 27 H 0.05 0.75 6.45 -51.93 -0.33 0.42 16 28 H 0.12 1.83 6.30 -52.48 -0.33 1.50 16 29 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 30 H 0.39 3.62 8.84 -40.82 -0.36 3.26 16 31 H 0.39 3.74 8.84 -40.82 -0.36 3.38 16 32 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 33 H 0.12 2.49 5.74 -52.49 -0.30 2.19 16 LS Contribution 262.37 15.07 3.95 3.95 Total: -1.00 -30.67 262.37 -5.95 -36.62 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.04 Total: 7.34 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -2.29 Total: -15.51 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.57 Total: -49.76 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.14 Total: 17.36 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.67 -5.95 -36.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063086785.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.311 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds