Wall clock time and date at job start Mon Mar 30 2020 03:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47088 * 2 1 4 4 C 1.50692 * 109.47453 * 120.00444 * 2 1 3 5 5 H 1.08005 * 120.00468 * 119.99513 * 4 2 1 6 6 C 1.37878 * 120.00098 * 300.00167 * 4 2 1 7 7 N 1.31513 * 120.00329 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99900 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47106 * 90.00195 * 8 6 4 10 10 H 1.48503 * 109.47294 * 210.00317 * 8 6 4 11 11 H 1.48501 * 109.47006 * 330.00487 * 8 6 4 12 12 N 1.46503 * 109.46809 * 240.00449 * 2 1 3 13 13 C 1.46498 * 120.00237 * 304.66283 * 12 2 1 14 14 C 1.39999 * 119.99841 * 124.66566 * 12 2 1 15 15 C 1.38867 * 120.00195 * 174.45690 * 14 12 2 16 16 C 1.38083 * 120.00048 * 180.25437 * 15 14 12 17 17 C 1.38862 * 120.00333 * 359.46268 * 16 15 14 18 18 N 1.39994 * 120.00022 * 180.27807 * 17 16 15 19 19 C 1.38861 * 119.99360 * 0.30377 * 17 16 15 20 20 C 1.38083 * 120.00470 * 359.95026 * 19 17 16 21 21 H 1.09004 * 109.46966 * 299.99393 * 1 2 3 22 22 H 1.08998 * 109.47174 * 59.99850 * 1 2 3 23 23 H 1.08998 * 109.47088 * 180.02562 * 1 2 3 24 24 H 0.96999 * 120.00201 * 180.02562 * 7 6 4 25 25 H 1.09003 * 109.47010 * 270.00216 * 13 12 2 26 26 H 1.09001 * 109.47242 * 29.99938 * 13 12 2 27 27 H 1.08997 * 109.47403 * 150.00330 * 13 12 2 28 28 H 1.08003 * 119.99642 * 359.97438 * 15 14 12 29 29 H 1.08003 * 119.99866 * 179.73584 * 16 15 14 30 30 H 0.97001 * 120.00583 * 0.02562 * 18 17 16 31 31 H 0.97006 * 119.99882 * 179.97438 * 18 17 16 32 32 H 1.08007 * 119.99282 * 179.97438 * 19 17 16 33 33 H 1.08002 * 120.00096 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 2.1382 -0.8592 3.5564 8 14 0.6259 1.2796 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9773 1.9951 3.9072 11 1 0.8491 2.1771 1.4924 12 7 2.0183 -0.6905 -1.1963 13 6 1.5821 -2.0598 -1.4810 14 6 2.9018 -0.0419 -2.0673 15 6 3.4546 -0.7331 -3.1374 16 6 4.3301 -0.0948 -3.9934 17 6 4.6491 1.2414 -3.7909 18 7 5.5321 1.8901 -4.6622 19 6 4.0925 1.9339 -2.7237 20 6 3.2211 1.2942 -1.8645 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.9036 -0.5281 4.4374 25 1 2.2709 -2.7647 -1.0154 26 1 0.5800 -2.2126 -1.0804 27 1 1.5710 -2.2209 -2.5590 28 1 3.2033 -1.7713 -3.2973 29 1 4.7633 -0.6336 -4.8231 30 1 5.9209 1.4063 -5.4077 31 1 5.7547 2.8236 -4.5209 32 1 4.3409 2.9731 -2.5659 33 1 2.7885 1.8328 -1.0343 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063086785.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:45 Heat of formation + Delta-G solvation = 24.411441 kcal Electronic energy + Delta-G solvation = -14851.197450 eV Core-core repulsion = 12490.339900 eV Total energy + Delta-G solvation = -2360.857550 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.43030 -38.06407 -35.26956 -34.01003 -32.30649 -31.34827 -28.92931 -27.19338 -26.35269 -23.64918 -22.67113 -20.89053 -19.00695 -18.19852 -17.52079 -17.15806 -16.60786 -15.71977 -15.38377 -14.99875 -14.67293 -14.34223 -14.27239 -13.95649 -13.72723 -13.45463 -13.02556 -12.91663 -12.83370 -12.35327 -12.04510 -11.71570 -11.55382 -11.37902 -11.10505 -10.75592 -9.69827 -9.37654 -8.31545 -7.32858 -6.35616 0.65736 1.08282 1.29511 1.35419 1.45429 2.29614 2.63791 3.02974 3.21177 3.31456 4.07746 4.22408 4.37609 4.50804 4.59923 4.64545 4.69905 4.80760 4.82847 4.95372 5.00796 5.06488 5.27531 5.39034 5.49591 5.56173 5.62047 5.74045 6.01708 6.21220 6.64254 6.79786 6.83752 7.08453 7.28626 7.31839 8.85944 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.037015 B = 0.008125 C = 0.007495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.262091 B = 3445.147018 C = 3735.093682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.244 3.756 3 H 0.043 0.957 4 C -0.525 4.525 5 H 0.029 0.971 6 C 0.014 3.986 7 N -0.948 5.948 8 Si 0.949 3.051 9 H -0.261 1.261 10 H -0.297 1.297 11 H -0.247 1.247 12 N -0.627 5.627 13 C 0.108 3.892 14 C 0.156 3.844 15 C -0.168 4.168 16 C -0.149 4.149 17 C 0.145 3.855 18 N -0.878 5.878 19 C -0.153 4.153 20 C -0.177 4.177 21 H 0.041 0.959 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.267 0.733 25 H 0.021 0.979 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.129 0.871 29 H 0.140 0.860 30 H 0.403 0.597 31 H 0.401 0.599 32 H 0.131 0.869 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.394 5.034 -16.103 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.140 3.860 3 H 0.061 0.939 4 C -0.564 4.564 5 H 0.047 0.953 6 C -0.183 4.183 7 N -0.588 5.588 8 Si 0.775 3.225 9 H -0.187 1.187 10 H -0.225 1.225 11 H -0.171 1.171 12 N -0.338 5.338 13 C -0.036 4.036 14 C 0.054 3.946 15 C -0.191 4.191 16 C -0.172 4.172 17 C 0.041 3.959 18 N -0.422 5.422 19 C -0.176 4.176 20 C -0.200 4.200 21 H 0.060 0.940 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.146 0.854 29 H 0.158 0.842 30 H 0.232 0.768 31 H 0.229 0.771 32 H 0.149 0.851 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.231 4.895 -15.772 16.560 hybrid contribution -0.100 0.372 0.825 0.910 sum 1.130 5.267 -14.947 15.889 Atomic orbital electron populations 1.22376 0.97682 1.01669 0.99846 1.18920 0.91093 0.93191 0.82799 0.93919 1.21584 1.31042 1.12826 0.90931 0.95272 1.25804 0.97322 1.00050 0.95172 1.70047 1.47571 1.42558 0.98633 0.85864 0.79271 0.79824 0.77534 1.18713 1.22457 1.17091 1.46507 1.49115 1.14366 1.23781 1.21399 0.99167 0.82538 1.00454 1.18078 0.92802 0.92126 0.91603 1.20599 1.01688 1.00226 0.96614 1.20535 1.01507 0.93449 1.01723 1.17616 0.93921 0.92190 0.92147 1.42177 1.52494 1.14645 1.32844 1.20477 1.00748 1.00214 0.96203 1.20660 1.03484 0.93945 1.01919 0.94023 0.92174 0.92286 0.92448 0.96083 0.91789 0.90107 0.85368 0.84175 0.76845 0.77071 0.85150 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.58 8.56 71.98 0.62 -5.97 16 2 C 0.24 11.58 2.17 44.24 0.10 11.68 16 3 H 0.04 2.08 4.37 -2.39 -0.01 2.07 16 4 C -0.52 -30.34 9.02 25.60 0.23 -30.11 16 5 H 0.03 1.91 8.03 -2.91 -0.02 1.88 16 6 C 0.01 0.82 5.45 84.66 0.46 1.28 16 7 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 8 Si 0.95 44.48 24.37 68.60 1.67 46.15 16 9 H -0.26 -11.51 6.87 99.48 0.68 -10.82 16 10 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 11 H -0.25 -10.71 6.53 99.48 0.65 -10.06 16 12 N -0.63 -26.66 2.90 -702.04 -2.03 -28.69 16 13 C 0.11 3.94 9.52 127.77 1.22 5.16 16 14 C 0.16 6.14 6.54 38.14 0.25 6.39 16 15 C -0.17 -5.53 9.16 22.38 0.21 -5.32 16 16 C -0.15 -4.15 9.89 22.38 0.22 -3.93 16 17 C 0.15 3.97 6.76 38.14 0.26 4.23 16 18 N -0.88 -16.39 9.10 -51.23 -0.47 -16.86 16 19 C -0.15 -4.80 9.89 22.38 0.22 -4.58 16 20 C -0.18 -6.76 9.31 22.38 0.21 -6.55 16 21 H 0.04 1.77 3.27 -2.39 -0.01 1.76 16 22 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.06 2.39 6.53 -2.39 -0.02 2.37 16 24 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 25 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 2.29 6.19 -2.39 -0.01 2.27 16 27 H 0.08 2.38 6.45 -2.39 -0.02 2.36 16 28 H 0.13 3.78 6.30 -2.91 -0.02 3.77 16 29 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 30 H 0.40 5.69 8.84 -92.71 -0.82 4.87 16 31 H 0.40 6.09 8.84 -92.70 -0.82 5.27 16 32 H 0.13 3.44 8.06 -2.91 -0.02 3.41 16 33 H 0.11 4.35 5.74 -2.91 -0.02 4.34 16 Total: -1.00 -68.23 262.37 2.88 -65.35 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -0.58 Total: 21.12 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: 3.98 Total: -27.72 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -2.20 Total: -104.90 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.67 Total: 46.15 kcal Total: -68.23 2.88 -65.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063086785.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.762 kcal (2) G-P(sol) polarization free energy of solvation -68.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds